GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001337-TA|BGIBMGA001337-PA|undefined
         (200 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47323| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-09)                 30   1.5  
SB_44578| Best HMM Match : PAN (HMM E-Value=0.00021)                   29   3.4  
SB_23143| Best HMM Match : Keratin_B2 (HMM E-Value=0.025)              28   4.6  
SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011)                     28   4.6  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    27   8.0  

>SB_47323| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-09)
          Length = 508

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 115 NSNTGVSFVKALAENITRVSLATPALQQAIVQGKYDAVITETFFNDAEAGLVRSLLFRFG 174
           +SN     VK+L +  T  +   PA++ A +  K D     TFF   E  L  S+L  FG
Sbjct: 327 HSNNNTEIVKSLVKIFTDAAFTAPAIKTARILAKRDVT---TFFFRVE--LKPSVLSGFG 381

Query: 175 GAFSEALLLPGLARDI-SGSAPGPDV 199
               +   + G   DI SG A  P++
Sbjct: 382 SRDDD---MRGKTADILSGDAGSPEL 404


>SB_44578| Best HMM Match : PAN (HMM E-Value=0.00021)
          Length = 257

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 45 LEAGHEVTWVTPYPPSELAKGLKIVDVSATVSISKSTRDSGICQIS 90
          +   H +   T  P   +  G  ++D     S++ S RD+GICQ++
Sbjct: 16 ITTNHVIYTETHVPSPTVCIGYCLLDDKRCKSVNYSARDNGICQLN 61



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 49  HEVTWVTPYPPSELAKGLKIVDVSATVSISKSTRDSGICQIS 90
           H +   T  P   +  G  ++D     S++ S RD+GICQ++
Sbjct: 189 HVIYTETHVPSPTVCIGYCLLDDKRCKSVNYSARDNGICQLN 230


>SB_23143| Best HMM Match : Keratin_B2 (HMM E-Value=0.025)
          Length = 348

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 18  RAYHVLCVFPIPSRSHNSLGKGIVDALLEAGHEVTWVTPYP-PSELAKGLKIVDVSATVS 76
           R+Y V CV P P RS+       V       + V+ + P P P  + + ++      +++
Sbjct: 266 RSYRVSCVQPSPRRSYR---VSCVQPNPRRFYRVSCIQPSPRPQSITRAVRQPWSKDSLA 322

Query: 77  ISKSTRDSGICQISCVVRQL 96
           I +S R   + +++CV+R +
Sbjct: 323 IRRSFR---LAKVACVIRTI 339


>SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011)
          Length = 521

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 49  HEVTWVTPYPPSELAKGLKIVDVSATVSISKSTRDSGICQIS 90
           H +   T  P   +  G  ++D     S++ S RD+GICQ++
Sbjct: 295 HVIYTETHVPSPTVCIGYCLLDDKRCKSVNYSARDNGICQLN 336


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 15  TSARAYHVLCV--FPIPSRSHNSLGKGIVDALLEAGHEVTWVTPYPPSELAKGLKIVDVS 72
           T++  Y  + V   PI S S N     + + +  A +    ++P P    +   + + V+
Sbjct: 600 TTSSVYETIAVNATPIISPSPNGTTSSVYETI--AVNATPIISPSPNGTTSSVYETIAVN 657

Query: 73  ATVSISKSTRDSGICQISCVVRQLPPFFYLS 103
           AT SIS ST ++       +     P  Y S
Sbjct: 658 ATPSISLSTNETASSPYETIAVNATPTIYPS 688


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,829,709
Number of Sequences: 59808
Number of extensions: 201034
Number of successful extensions: 424
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 15
length of query: 200
length of database: 16,821,457
effective HSP length: 79
effective length of query: 121
effective length of database: 12,096,625
effective search space: 1463691625
effective search space used: 1463691625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)