GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001337-TA|BGIBMGA001337-PA|undefined
         (200 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger) fa...    29   2.8  

>At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 345

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 102 LSSFLAVDMHEQRNSNTGVSFVKALAENITRVSLATP 138
           LSS+   ++   R+ +TG S V+ L EN+ R +L  P
Sbjct: 212 LSSWRMAEIFVPRSHSTGHSLVQQLGENLDRFTLQLP 248


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,222,134
Number of Sequences: 28952
Number of extensions: 154783
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 1
length of query: 200
length of database: 12,070,560
effective HSP length: 78
effective length of query: 122
effective length of database: 9,812,304
effective search space: 1197101088
effective search space used: 1197101088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)