Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001336-TA|BGIBMGA001336-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR000629|ATP-dependent helicase, DEAD-box,
IPR014021|Helicase superfamily 1 and 2 ATP-binding, IPR014014|DEAD-box
RNA helicase Q motif, IPR013957|Protein of unknown function DUF1777,
IPR011545|DEAD/DEAH box helicase, N-terminal
         (379 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   197   1e-52
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   4.8  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   4.8  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  197 bits (480), Expect = 1e-52
 Identities = 109/285 (38%), Positives = 168/285 (58%), Gaps = 12/285 (4%)

Query: 93  ENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIA 152
           E E+ + G + P P  +F+ +G   ++++ + K G+ KPT IQ    P+ LSG D++  A
Sbjct: 143 EIEVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCA 202

Query: 153 STGSGKTLSYILPAIVHI---NNQPKSSRGDG-PIALVLAPTRELAQQIQEVCDKFANTS 208
            TGSGKT +++LP I ++    N P +      P+ ++++PTRELA QI +   KFA  S
Sbjct: 203 QTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNS 262

Query: 209 KIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRML 268
            +    ++GG     Q   +  G  I++ATPGRL DF+  G  +     Y VLDEADRML
Sbjct: 263 TVKVAVIYGGTSTNHQRGRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRML 322

Query: 269 DMGFEPQIRKII-EQIRP---DRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAAN 324
           DMGF   + +++  Q  P   +RQTLM+SAT+P EVQ LA +FL +Y+ I VG +  A  
Sbjct: 323 DMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACT 382

Query: 325 HNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVD 369
            ++ Q      +++K +KL ++L++   E   +T+IF+ETKR  D
Sbjct: 383 -DVEQKFFQVSKFDKRSKLVSILEKAPNE---RTLIFVETKRNAD 423


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/45 (20%), Positives = 21/45 (46%)

Query: 79  VEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEI 123
           V++   + VE W   + +  K + I K   +      P +++D++
Sbjct: 220 VQETNRTSVEGWTDVSNVKRKSKEISKLPKSMLAISDPVFIVDQV 264


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/45 (20%), Positives = 21/45 (46%)

Query: 79  VEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEI 123
           V++   + VE W   + +  K + I K   +      P +++D++
Sbjct: 220 VQETNRTSVEGWTDVSNVKRKSKEISKLPKSMLAISDPVFIVDQV 264


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,289
Number of Sequences: 317
Number of extensions: 3528
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 379
length of database: 114,650
effective HSP length: 58
effective length of query: 321
effective length of database: 96,264
effective search space: 30900744
effective search space used: 30900744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)