Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001336-TA|BGIBMGA001336-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR000629|ATP-dependent helicase, DEAD-box,
IPR014021|Helicase superfamily 1 and 2 ATP-binding, IPR014014|DEAD-box
RNA helicase Q motif, IPR013957|Protein of unknown function DUF1777,
IPR011545|DEAD/DEAH box helicase, N-terminal
         (379 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      196   2e-52
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   1.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  196 bits (479), Expect = 2e-52
 Identities = 117/291 (40%), Positives = 170/291 (58%), Gaps = 20/291 (6%)

Query: 95  EITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIAST 154
           ++ + G N+P+P  +F+ AG  + V+D I K G+ KPTP+Q    PI ++G D++  A T
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242

Query: 155 GSGKTLSYILPAIVHINNQPK----SSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKI 210
           GSGKT ++ +P I  +  +      +S    P  ++++PTREL  QI +   KF+  S +
Sbjct: 243 GSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSIL 302

Query: 211 HNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDM 270
                +GG     Q   L AG  I++ATPGRLLDF+E GR       +LVLDEADRMLDM
Sbjct: 303 KTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDM 362

Query: 271 GFEPQIRKII--EQIRP--DRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHN 326
           GF P I K++  E + P  +RQTLM+SAT+P EVQ LA  FL +YL + VG +  A +  
Sbjct: 363 GFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDV 422

Query: 327 ILQIIDVCMEYEKETKLSTLLKEIMAEKENK------TIIFIETKRRVDDI 371
                +V    +K+     LLKEI+ E+EN       T++F+E K++ D I
Sbjct: 423 EQNFYEVARNKKKD-----LLKEIL-ERENDSGTLGGTLVFVEMKKKADFI 467


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 77  LDVEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPD--YVMDE 122
           +D+ K+    +E W +E  I  KG+ + +     D  G P   Y ++E
Sbjct: 371 IDLRKKQLKSLEDWENEMNIITKGKPLIRVENIIDLEGAPQNFYYIEE 418


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 146 HDMVGIASTGSGKTLSYILPAIVHIN 171
           HD+   ASTG+G  +S ++ A+  +N
Sbjct: 176 HDIAVNASTGNGGLVSLVVQAMDPVN 201


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,790
Number of Sequences: 429
Number of extensions: 4136
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 379
length of database: 140,377
effective HSP length: 59
effective length of query: 320
effective length of database: 115,066
effective search space: 36821120
effective search space used: 36821120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)