Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001336-TA|BGIBMGA001336-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR000629|ATP-dependent helicase, DEAD-box,
IPR014021|Helicase superfamily 1 and 2 ATP-binding, IPR014014|DEAD-box
RNA helicase Q motif, IPR013957|Protein of unknown function DUF1777,
IPR011545|DEAD/DEAH box helicase, N-terminal
(379 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 407 e-114
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 404 e-113
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 404 e-113
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 311 6e-85
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 311 6e-85
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 311 6e-85
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 309 2e-84
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 274 5e-74
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 273 1e-73
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 270 1e-72
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 265 4e-71
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 230 1e-60
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 219 2e-57
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 217 8e-57
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 207 1e-53
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 206 2e-53
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 206 2e-53
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 205 3e-53
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 204 6e-53
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 171 5e-43
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 164 1e-40
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 150 2e-36
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 149 3e-36
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 146 3e-35
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 143 2e-34
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 143 2e-34
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 140 1e-33
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 140 2e-33
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 140 2e-33
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 139 3e-33
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 138 7e-33
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 135 5e-32
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 135 5e-32
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 133 2e-31
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 132 4e-31
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 130 1e-30
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 130 1e-30
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 128 6e-30
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 128 6e-30
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 127 1e-29
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 127 1e-29
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 127 1e-29
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 126 2e-29
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 126 3e-29
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 125 6e-29
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 124 1e-28
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 119 3e-27
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 117 1e-26
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 117 1e-26
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 116 3e-26
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 115 6e-26
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 113 2e-25
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 111 6e-25
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 109 4e-24
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 108 7e-24
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 107 9e-24
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 107 1e-23
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 101 6e-22
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 100 3e-21
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 91 8e-19
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 90 2e-18
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 77 2e-14
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 77 3e-14
At2g28600.1 68415.m03476 expressed protein 69 4e-12
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 69 5e-12
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 32 0.55
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 32 0.55
At4g16400.1 68417.m02482 expressed protein 32 0.73
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 31 0.96
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 31 1.7
At4g25450.1 68417.m03665 ABC transporter family protein similar ... 30 2.9
At5g41140.1 68418.m05001 expressed protein 29 5.1
At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta... 29 5.1
At3g02290.2 68416.m00211 zinc finger (C3HC4-type RING finger) fa... 29 5.1
At3g02290.1 68416.m00210 zinc finger (C3HC4-type RING finger) fa... 29 5.1
At4g23380.1 68417.m03371 hypothetical protein predicted proteins... 29 6.8
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 29 6.8
At3g21250.1 68416.m02685 ABC transporter family protein similar ... 29 6.8
At1g58060.1 68414.m06580 helicase domain-containing protein cont... 29 6.8
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 29 6.8
At4g13880.1 68417.m02150 leucine-rich repeat family protein cont... 28 9.0
At3g27670.1 68416.m03455 expressed protein 28 9.0
At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4... 28 9.0
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 28 9.0
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 28 9.0
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g... 28 9.0
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 28 9.0
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 407 bits (1003), Expect = e-114
Identities = 188/321 (58%), Positives = 244/321 (76%), Gaps = 2/321 (0%)
Query: 59 KWDLSRLKPFKKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDY 118
K DL L PF+K+FYV V +++VE +R EIT++G++IPKP +F + GFPDY
Sbjct: 50 KLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDY 109
Query: 119 VMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSR 178
V++E+ K GF +PTPIQ+QGWP+A+ G D++GIA TGSGKTLSY+LPAIVH+N QP +
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH 169
Query: 179 GDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIAT 238
GDGPI LVLAPTRELA QIQ+ KF ++SKI TC++GG PKGPQ RDL GVEIVIAT
Sbjct: 170 GDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIAT 229
Query: 239 PGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPR 298
PGRL+D +ES TNL+R TYLVLDEADRMLDMGF+PQIRKI+ IRPDRQTL WSATWP+
Sbjct: 230 PGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPK 289
Query: 299 EVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKT 358
EV+ L+ +FL + ++ +GS L AN I QI+DV E +K KL LL++IM ++
Sbjct: 290 EVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIM--DGSRI 347
Query: 359 IIFIETKRRVDDITRKMKRDG 379
++F++TK+ D ITR+++ DG
Sbjct: 348 LVFLDTKKGCDQITRQLRMDG 368
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 404 bits (995), Expect = e-113
Identities = 189/326 (57%), Positives = 246/326 (75%), Gaps = 2/326 (0%)
Query: 54 SLRKPKWDLSRLKPFKKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEA 113
S+ PK + L F+K+FYV V+ E DV +R+E +I+++GR++PKP F +A
Sbjct: 111 SVSLPKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDA 170
Query: 114 GFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQ 173
FPD +++ I K+GF +PTPIQAQGWP+AL G D++GIA TGSGKTL+Y+LPA+VH++ Q
Sbjct: 171 NFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQ 230
Query: 174 PKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVE 233
P+ + DGPI L+LAPTRELA QIQE KF S + +TC++GGAPKGPQ RDL GVE
Sbjct: 231 PRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVE 290
Query: 234 IVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 293
IVIATPGRL+D LE TNLKR TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WS
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWS 350
Query: 294 ATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAE 353
ATWPREV++LA +FL+D + +GS L AN +I Q+I++ EK +L TLLK++M
Sbjct: 351 ATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLM-- 408
Query: 354 KENKTIIFIETKRRVDDITRKMKRDG 379
+K +IF+ETKR D +TR+++ DG
Sbjct: 409 DGSKILIFVETKRGCDQVTRQLRMDG 434
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 404 bits (995), Expect = e-113
Identities = 189/326 (57%), Positives = 246/326 (75%), Gaps = 2/326 (0%)
Query: 54 SLRKPKWDLSRLKPFKKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEA 113
S+ PK + L F+K+FYV V+ E DV +R+E +I+++GR++PKP F +A
Sbjct: 111 SVSLPKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDA 170
Query: 114 GFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQ 173
FPD +++ I K+GF +PTPIQAQGWP+AL G D++GIA TGSGKTL+Y+LPA+VH++ Q
Sbjct: 171 NFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQ 230
Query: 174 PKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVE 233
P+ + DGPI L+LAPTRELA QIQE KF S + +TC++GGAPKGPQ RDL GVE
Sbjct: 231 PRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVE 290
Query: 234 IVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 293
IVIATPGRL+D LE TNLKR TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WS
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWS 350
Query: 294 ATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAE 353
ATWPREV++LA +FL+D + +GS L AN +I Q+I++ EK +L TLLK++M
Sbjct: 351 ATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLM-- 408
Query: 354 KENKTIIFIETKRRVDDITRKMKRDG 379
+K +IF+ETKR D +TR+++ DG
Sbjct: 409 DGSKILIFVETKRGCDQVTRQLRMDG 434
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 311 bits (763), Expect = 6e-85
Identities = 152/295 (51%), Positives = 205/295 (69%), Gaps = 4/295 (1%)
Query: 84 ESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIAL 143
E EA+ +EIT+ G +P P ++F+ GFP ++ E+ GF+ PTPIQAQ WPIA+
Sbjct: 134 ELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAM 193
Query: 144 SGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDK 203
G D+V IA TGSGKTL Y++P +H+ SR GP LVL+PTRELA QIQE K
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVK 252
Query: 204 FANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDE 263
F +S+I TCL+GGAPKGPQ RDL+ G +IV+ATPGRL D LE R +L++ +YLVLDE
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDE 312
Query: 264 ADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSL-QLA 322
ADRMLDMGFEPQIRKI+++I RQTLM++ATWP+ V+ +A++ L + Q+N+G++ +L
Sbjct: 313 ADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELV 372
Query: 323 ANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKR 377
AN +I Q I+V EK+ +L +L+ E +K IIF TKR D +TR + R
Sbjct: 373 ANKSITQHIEVVAPMEKQRRLEQILRS--QEPGSKVIIFCSTKRMCDQLTRNLTR 425
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 311 bits (763), Expect = 6e-85
Identities = 152/295 (51%), Positives = 205/295 (69%), Gaps = 4/295 (1%)
Query: 84 ESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIAL 143
E EA+ +EIT+ G +P P ++F+ GFP ++ E+ GF+ PTPIQAQ WPIA+
Sbjct: 134 ELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAM 193
Query: 144 SGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDK 203
G D+V IA TGSGKTL Y++P +H+ SR GP LVL+PTRELA QIQE K
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVK 252
Query: 204 FANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDE 263
F +S+I TCL+GGAPKGPQ RDL+ G +IV+ATPGRL D LE R +L++ +YLVLDE
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDE 312
Query: 264 ADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSL-QLA 322
ADRMLDMGFEPQIRKI+++I RQTLM++ATWP+ V+ +A++ L + Q+N+G++ +L
Sbjct: 313 ADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELV 372
Query: 323 ANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKR 377
AN +I Q I+V EK+ +L +L+ E +K IIF TKR D +TR + R
Sbjct: 373 ANKSITQHIEVVAPMEKQRRLEQILRS--QEPGSKVIIFCSTKRMCDQLTRNLTR 425
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 311 bits (763), Expect = 6e-85
Identities = 152/295 (51%), Positives = 205/295 (69%), Gaps = 4/295 (1%)
Query: 84 ESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIAL 143
E EA+ +EIT+ G +P P ++F+ GFP ++ E+ GF+ PTPIQAQ WPIA+
Sbjct: 134 ELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAM 193
Query: 144 SGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDK 203
G D+V IA TGSGKTL Y++P +H+ SR GP LVL+PTRELA QIQE K
Sbjct: 194 QGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVK 252
Query: 204 FANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDE 263
F +S+I TCL+GGAPKGPQ RDL+ G +IV+ATPGRL D LE R +L++ +YLVLDE
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDE 312
Query: 264 ADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSL-QLA 322
ADRMLDMGFEPQIRKI+++I RQTLM++ATWP+ V+ +A++ L + Q+N+G++ +L
Sbjct: 313 ADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELV 372
Query: 323 ANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKR 377
AN +I Q I+V EK+ +L +L+ E +K IIF TKR D +TR + R
Sbjct: 373 ANKSITQHIEVVAPMEKQRRLEQILRS--QEPGSKVIIFCSTKRMCDQLTRNLTR 425
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 309 bits (758), Expect = 2e-84
Identities = 150/294 (51%), Positives = 206/294 (70%), Gaps = 4/294 (1%)
Query: 85 SDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALS 144
S VE +R ++E+T G NIP P +TF+ +G P ++ E+ GF PTPIQAQ WPIAL
Sbjct: 412 SPVEIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQ 471
Query: 145 GHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKF 204
D+V IA TGSGKTL Y++PA + + + SR +GP L+LAPTRELA QIQ+ +F
Sbjct: 472 SRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRF 530
Query: 205 ANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEA 264
+S+I TCL+GGAPKGPQ ++L+ G +IV+ATPGRL D LE + ++ + LVLDEA
Sbjct: 531 GRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEA 590
Query: 265 DRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSL-QLAA 323
DRMLDMGFEPQIRKI+ +I P RQTLM++ATWP+EV+ +AS+ L + +Q+N+G + +LAA
Sbjct: 591 DRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAA 650
Query: 324 NHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKR 377
N I Q ++V + EKE +L +L+ E+ +K IIF TKR D + R + R
Sbjct: 651 NKAITQYVEVVPQMEKERRLEQILRS--QERGSKVIIFCSTKRLCDHLARSVGR 702
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 274 bits (673), Expect = 5e-74
Identities = 134/313 (42%), Positives = 206/313 (65%), Gaps = 6/313 (1%)
Query: 66 KPFKKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDK 125
+PF+K+FY+ D+ + + +V +R E E+ + G+++P+P + + G ++D + K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 126 MGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIAL 185
+ + KP PIQ Q PI +SG D +G+A TGSGKTL ++LP + HI +QP GDGPI L
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGL 606
Query: 186 VLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDF 245
V+APTREL QQI KF+ I ++GG+ Q +L G EIV+ TPGR++D
Sbjct: 607 VMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDI 666
Query: 246 L--ESGR-TNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQS 302
L SG+ TNL+R T+LV+DEADRM DMGFEPQI +II+ IRP+RQT+++SAT+PR+V++
Sbjct: 667 LCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVET 726
Query: 303 LASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFI 362
LA + L ++I VG + N +I Q+++V E ++ +L LL E +EK K ++F+
Sbjct: 727 LARKVLNKPVEIQVGG-RSVVNKDITQLVEVRPESDRFLRLLELLGE-WSEK-GKILVFV 783
Query: 363 ETKRRVDDITRKM 375
+++ + D + R M
Sbjct: 784 QSQEKCDALYRDM 796
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 273 bits (670), Expect = 1e-73
Identities = 132/305 (43%), Positives = 202/305 (66%), Gaps = 6/305 (1%)
Query: 66 KPFKKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDK 125
+PF+K+FY+ D+ + + V A+R E E+ + G+++P+P + + G ++D + K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 126 MGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIAL 185
+ + KP PIQAQ PI +SG D +G+A TGSGKTL ++LP + HI +QP GDGPI L
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGL 473
Query: 186 VLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDF 245
V+APTREL QQI KF+ I ++GG+ Q +L G EIV+ TPGR++D
Sbjct: 474 VMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDI 533
Query: 246 L--ESGR-TNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQS 302
L SG+ TNL+R TYLV+DEADRM DMGFEPQI +I++ IRPDRQT+++SAT+PR+V++
Sbjct: 534 LCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVET 593
Query: 303 LASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFI 362
LA + L ++I VG + N +I Q++++ E E+ ++L LL E ++ K ++F+
Sbjct: 594 LARKVLNKPVEIQVGG-RSVVNKDITQLVEIRPESERFSRLLELLGEWY--EKGKVLVFV 650
Query: 363 ETKRR 367
++ +
Sbjct: 651 RSQEK 655
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 270 bits (661), Expect = 1e-72
Identities = 132/252 (52%), Positives = 177/252 (70%), Gaps = 4/252 (1%)
Query: 127 GFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALV 186
GF+ P+PIQAQ WPIA+ D+V IA TGSGKTL Y++P +H+ SR GP LV
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILV 306
Query: 187 LAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFL 246
L+PTRELA QIQ KF +SKI CL+GGAPKGPQ ++++ GV+IV+ATPGRL D L
Sbjct: 307 LSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDIL 366
Query: 247 ESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASE 306
E R +L + +YLVLDEADRMLDMGFEPQIRKI+ ++ RQTLM++ATWP+EV+ +A++
Sbjct: 367 EMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAAD 426
Query: 307 FLKDYLQINVGSL-QLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETK 365
L + Q+N+G++ +L AN +I Q I+V EK ++L +L+ E +K IIF TK
Sbjct: 427 LLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRS--QEPGSKIIIFCSTK 484
Query: 366 RRVDDITRKMKR 377
R D + R + R
Sbjct: 485 RMCDQLARNLTR 496
Score = 33.1 bits (72), Expect = 0.32
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 84 ESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDE 122
E EA+ ++EIT+ G +P P ++F+ G P+ ++ E
Sbjct: 137 ELSPEAYCRKHEITVSGGQVPPPLMSFEATGLPNELLRE 175
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 265 bits (649), Expect = 4e-71
Identities = 135/311 (43%), Positives = 195/311 (62%), Gaps = 4/311 (1%)
Query: 66 KPFKKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDK 125
+P KDFY + E + +R I + G ++ +P TF++ GF +M I K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 126 MGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIAL 185
+ KPT IQ Q PI LSG D++GIA TGSGKT +++LP IVHI +QP+ R +GPI +
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGV 305
Query: 186 VLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDF 245
+ APTRELA QI KF+ + + ++GG K Q ++L AG EIV+ATPGRL+D
Sbjct: 306 ICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDM 365
Query: 246 LESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLAS 305
L+ + R +YLVLDEADRM D+GFEPQ+R I+ QIRPDRQTL++SAT P +V+ LA
Sbjct: 366 LKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAR 425
Query: 306 EFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAE-KENKTIIFIET 364
E L D +++ VG + + AN +I Q+++V + + E KL LL+++ E ++F
Sbjct: 426 EILSDPIRVTVGEVGM-ANEDITQVVNV-IPSDAE-KLPWLLEKLPGMIDEGDVLVFASK 482
Query: 365 KRRVDDITRKM 375
K VD+I ++
Sbjct: 483 KATVDEIEAQL 493
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 230 bits (563), Expect = 1e-60
Identities = 127/318 (39%), Positives = 192/318 (60%), Gaps = 11/318 (3%)
Query: 69 KKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPTL--TFDEAGFPDYVMDEIDKM 126
KKD VP +E + E+ + + +T KG K TF E+ P+ V+D
Sbjct: 77 KKD--VPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT- 133
Query: 127 GFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDG----P 182
F KP+PIQ+ WP L G D++GIA TGSGKTL++ +PAI+H+ + K G P
Sbjct: 134 -FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNP 192
Query: 183 IALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRL 242
LVL+PTRELA QI +V + + + C++GG+ KGPQ + +GV+IVI TPGRL
Sbjct: 193 TCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRL 252
Query: 243 LDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQS 302
D +ES L +++VLDEADRMLDMGFE +R I+ RQ +M+SATWP +V
Sbjct: 253 RDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHK 312
Query: 303 LASEFL-KDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIF 361
LA EF+ + +++ +GS+ LAANH+++QII+V E ++ +L LL++ ++N+ ++F
Sbjct: 313 LAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVF 372
Query: 362 IETKRRVDDITRKMKRDG 379
K + + R +++ G
Sbjct: 373 ALYKVEAERLERFLQQRG 390
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 219 bits (536), Expect = 2e-57
Identities = 128/336 (38%), Positives = 194/336 (57%), Gaps = 17/336 (5%)
Query: 52 GASLRKPKWDLSR--LKPFKKDFYVPHLDVEKRPESDVEAWRSEN-EITLKGRNIPKPTL 108
G + R WD + PF+ D P ++ + + E+ I G N+P P
Sbjct: 100 GWNNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVN 159
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
TF E + + I + + KPTP+Q PI L G D++ A TGSGKT ++ P I
Sbjct: 160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS 219
Query: 169 HINN-----QPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGP 223
I +P+ SR P+A++L+PTRELA QI + KF+ + + +GG P
Sbjct: 220 GIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQ 279
Query: 224 QARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQI 283
Q R+L+ GV+I++ATPGRL D LE R +++ +L LDEADRMLDMGFEPQIRKI+EQ+
Sbjct: 280 QLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 339
Query: 284 ----RPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEK 339
R RQTL++SAT+PRE+Q LA++FL +Y+ + VG + ++ I+Q ++ ++ +K
Sbjct: 340 DMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLDSDK 398
Query: 340 ETKLSTLL----KEIMAEKENKTIIFIETKRRVDDI 371
+ L LL + + K+ T++F+ETKR D +
Sbjct: 399 RSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSL 434
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 217 bits (531), Expect = 8e-57
Identities = 128/336 (38%), Positives = 194/336 (57%), Gaps = 18/336 (5%)
Query: 52 GASLRKPKWDL--SRLKPFKKDFYV-PHLDVEKRPESDVEAWRSENEITLKGRNIPKPTL 108
G + R WD + PF D P ++ ++ + EA+ + I G N+P P
Sbjct: 88 GWNARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYE-DIPIETSGDNVPPPVN 146
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
TF E + + I + + KPTP+Q PI +G D++ A TGSGKT ++ P I
Sbjct: 147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS 206
Query: 169 HINN-----QPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGP 223
I +P+ RG P+A++L+PTRELA QI + KF+ + + +GG P
Sbjct: 207 GIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQ 266
Query: 224 QARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQI 283
Q R+L+ GV+I++ATPGRL D LE GR +L+ +L LDEADRMLDMGFEPQIRKI++Q+
Sbjct: 267 QIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQM 326
Query: 284 -RPD---RQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEK 339
P RQT+++SAT+PRE+Q LAS+FL +Y+ + VG + ++ I+Q ++ + +K
Sbjct: 327 DMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDK 385
Query: 340 ETKLSTLLKEIMAE----KENKTIIFIETKRRVDDI 371
+ L LL K+ T++F+ETK+ D +
Sbjct: 386 RSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSL 421
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 207 bits (505), Expect = 1e-53
Identities = 117/306 (38%), Positives = 169/306 (55%), Gaps = 14/306 (4%)
Query: 75 PHLDVEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPI 134
P L + K + R + I + G +IP P F + FP V+D + + G +PTPI
Sbjct: 113 PPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPI 172
Query: 135 QAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKS---SRGDGPIALVLAPTR 191
Q QG P+ L+G DM+GIA TGSGKTL ++LP I+ + + G+GPI L++ P+R
Sbjct: 173 QVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSR 232
Query: 192 ELAQQIQEVCDKF------ANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDF 245
ELA+Q EV ++F A + + GG Q + GV IV+ATPGRL D
Sbjct: 233 ELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDM 292
Query: 246 LESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLAS 305
L + +L C YL LDEADR++D+GFE IR++ + + RQTL++SAT P ++Q A
Sbjct: 293 LAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFAR 352
Query: 306 EFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETK 365
L + +NVG AAN +++Q + EY K+ L E + + +IF E K
Sbjct: 353 SALVKPVTVNVGRAG-AANLDVIQEV----EYVKQEAKIVYLLECLQKTSPPVLIFCENK 407
Query: 366 RRVDDI 371
VDDI
Sbjct: 408 ADVDDI 413
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 206 bits (503), Expect = 2e-53
Identities = 111/287 (38%), Positives = 173/287 (60%), Gaps = 12/287 (4%)
Query: 96 ITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTG 155
+ G ++P P TF + D + I + + +PTP+Q PI L+ D++ A TG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 156 SGKTLSYILPAIVHINN-----QPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKI 210
SGKT ++ P I I +P+ SR P A++L+PTRELA QI + KF+ + +
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 211 HNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDM 270
+GG P Q R+L+ G +I++ATPGRL D LE R +++ +L LDEADRMLDM
Sbjct: 259 KVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 318
Query: 271 GFEPQIRKIIEQI----RPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHN 326
GFEPQIRKI+EQ+ R RQT+++SAT+P ++Q LA++F+ +Y+ + VG + ++
Sbjct: 319 GFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDL 377
Query: 327 ILQIIDVCMEYEKETKLSTLL--KEIMAEKENKTIIFIETKRRVDDI 371
I Q ++ E +K + L LL + +K++ T++F+ETKR D +
Sbjct: 378 ITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTL 424
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 206 bits (503), Expect = 2e-53
Identities = 111/287 (38%), Positives = 173/287 (60%), Gaps = 12/287 (4%)
Query: 96 ITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTG 155
+ G ++P P TF + D + I + + +PTP+Q PI L+ D++ A TG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 156 SGKTLSYILPAIVHINN-----QPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKI 210
SGKT ++ P I I +P+ SR P A++L+PTRELA QI + KF+ + +
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 211 HNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDM 270
+GG P Q R+L+ G +I++ATPGRL D LE R +++ +L LDEADRMLDM
Sbjct: 259 KVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 318
Query: 271 GFEPQIRKIIEQI----RPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHN 326
GFEPQIRKI+EQ+ R RQT+++SAT+P ++Q LA++F+ +Y+ + VG + ++
Sbjct: 319 GFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDL 377
Query: 327 ILQIIDVCMEYEKETKLSTLL--KEIMAEKENKTIIFIETKRRVDDI 371
I Q ++ E +K + L LL + +K++ T++F+ETKR D +
Sbjct: 378 ITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTL 424
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 205 bits (501), Expect = 3e-53
Identities = 118/321 (36%), Positives = 183/321 (57%), Gaps = 24/321 (7%)
Query: 79 VEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQG 138
+E+ E D +R + I+ KG IP+P +++E+ ++ +++ G+ KP+PIQ
Sbjct: 284 LEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAA 343
Query: 139 WPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRG---DGPIALVLAPTRELAQ 195
P+ L D++GIA TGSGKT +++LP + +I+ P S +GP A+V+APTRELAQ
Sbjct: 344 IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQ 403
Query: 196 QIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKR 255
QI+E KFA+ T + GG Q + G EIVIATPGRL+D LE L +
Sbjct: 404 QIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQ 463
Query: 256 CTYLVLDEADRMLDMGFEPQIRKIIE-----QIRPD------------RQTLMWSATWPR 298
C Y+VLDEADRM+DMGFEPQ+ +++ ++P+ R T M+SAT P
Sbjct: 464 CNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPP 523
Query: 299 EVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKT 358
V+ LA ++L++ + + +G+ + I Q + + E EK +L LL E+ E
Sbjct: 524 GVERLARKYLRNPVVVTIGTAGKTTD-LISQHVIMMKESEKFFRLQKLLDEL---GEKTA 579
Query: 359 IIFIETKRRVDDITRKMKRDG 379
I+F+ TK+ D I + + + G
Sbjct: 580 IVFVNTKKNCDSIAKNLDKAG 600
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 204 bits (499), Expect = 6e-53
Identities = 117/309 (37%), Positives = 171/309 (55%), Gaps = 14/309 (4%)
Query: 72 FYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKP 131
++ P L V K ++ R + IT+ G +IP P F + FP ++ + G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 132 TPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQP---KSSRGDGPIALVLA 188
TPIQ QG P+ LSG DM+GIA TGSGKTL ++LP I+ + + G+GPIALV+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVIC 180
Query: 189 PTRELAQQIQEVCDKFANT------SKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRL 242
P+RELA+Q +V ++F + ++ + GG Q + GV IV+ATPGRL
Sbjct: 181 PSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRL 240
Query: 243 LDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQS 302
D L + +L C L LDEADR++D+GFE IR + + + RQTL++SAT P ++Q
Sbjct: 241 KDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQI 300
Query: 303 LASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFI 362
A+ L + +NVG AAN +++Q + EY K+ L E + + +IF
Sbjct: 301 FATSALVKPVTVNVGRAG-AANLDVIQEV----EYVKQEAKIVYLLECLQKTTPPVLIFC 355
Query: 363 ETKRRVDDI 371
E K VDDI
Sbjct: 356 ENKADVDDI 364
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 171 bits (417), Expect = 5e-43
Identities = 97/272 (35%), Positives = 150/272 (55%), Gaps = 6/272 (2%)
Query: 108 LTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAI 167
L E G ++ + G K PIQ A+ G DM+G A TG+GKTL++ +P I
Sbjct: 104 LAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163
Query: 168 VHI-NNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQAR 226
I K RG P+ LVLAPTRELA+Q+++ + A + + CL+GG P G Q R
Sbjct: 164 DKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMR 221
Query: 227 DLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 286
LD GV++ + TPGR++D ++ G NL ++VLDEAD+ML +GF + I+E++
Sbjct: 222 QLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEK 281
Query: 287 RQTLMWSATWPREVQSLASEFLKDYLQIN-VGSLQLAANHNILQIIDVCMEYEKETKLST 345
RQ++M+SAT P ++SL ++L + L ++ VG I + Y + + +
Sbjct: 282 RQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGP 341
Query: 346 LLKEIMAEKENKTIIFIETKRRVDDITRKMKR 377
L+ E K K I+F +TKR D ++ + R
Sbjct: 342 LVTE--HAKGGKCIVFTQTKRDADRLSYALAR 371
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 164 bits (398), Expect = 1e-40
Identities = 94/264 (35%), Positives = 146/264 (55%), Gaps = 6/264 (2%)
Query: 108 LTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAI 167
L + G ++ + G K PIQ A+ G DM+G A TG+GKTL++ +P I
Sbjct: 116 LAIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
Query: 168 VHINN-QPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQAR 226
I K RG P LVLAPTRELA+Q+++ + A + + CL+GG P G Q R
Sbjct: 176 DKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPS--LDTICLYGGTPIGQQMR 233
Query: 227 DLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 286
+L+ G+++ + TPGR++D ++ G NL ++VLDEAD+ML +GF + I++++
Sbjct: 234 ELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAK 293
Query: 287 RQTLMWSATWPREVQSLASEFLKDYLQIN-VGSLQLAANHNILQIIDVCMEYEKETKLST 345
RQ++M+SAT P ++SL ++L + L I+ VG I Y + + +
Sbjct: 294 RQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGP 353
Query: 346 LLKEIMAEKENKTIIFIETKRRVD 369
L+KE K K I+F +TKR D
Sbjct: 354 LVKE--HGKGGKCIVFTQTKRDAD 375
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 150 bits (363), Expect = 2e-36
Identities = 94/271 (34%), Positives = 143/271 (52%), Gaps = 10/271 (3%)
Query: 108 LTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAI 167
L + P + + ++K G PIQ AL G D++ A TG+GKTL++ +P I
Sbjct: 102 LAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPII 161
Query: 168 VHINNQP---KSSRGDG--PIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKG 222
+ + + R G P LVLAPTRELA+Q+++ + A + C++GG
Sbjct: 162 KRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESA--PYLSTVCVYGGVSYT 219
Query: 223 PQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQ 282
Q L GV++V+ TPGR++D +E L YLVLDEAD+ML +GFE + I+E
Sbjct: 220 IQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILEN 279
Query: 283 IRPDRQTLMWSATWPREVQSLASEFLKDYLQIN-VGSLQLAANHNILQIIDVCMEYEKET 341
+ RQ++++SAT P V+ LA ++L + L I+ VG I K T
Sbjct: 280 LPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRT 339
Query: 342 KLSTLLKEIMAEKENKTIIFIETKRRVDDIT 372
LS L+ + K KTI+F +TKR D+++
Sbjct: 340 ILSDLI--TVYAKGGKTIVFTQTKRDADEVS 368
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 149 bits (361), Expect = 3e-36
Identities = 86/268 (32%), Positives = 139/268 (51%), Gaps = 7/268 (2%)
Query: 86 DVEAWRSENEITLKGRN--IPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIAL 143
D + R + +I ++G+ +P P LTF G P ++ ++ G+ PTPIQ Q P AL
Sbjct: 86 DAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAAL 145
Query: 144 SGHDMVGIASTGSGKTLSYILPAIVHI---NNQPKSSRGDGPIALVLAPTRELAQQIQEV 200
+G ++ A TGSGKT S+++P I +++ S + P+A+VLAPTREL Q+++
Sbjct: 146 TGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQ 205
Query: 201 CDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLV 260
+ GG P Q + GVE++I TPGR++D L L V
Sbjct: 206 AKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFV 265
Query: 261 LDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQ 320
LDE D ML GF Q+ +I + + Q L++SAT REV+ + K+ + +++G+
Sbjct: 266 LDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPN 324
Query: 321 LAANHNILQIIDVCMEYEKETKLSTLLK 348
N + Q+ +K+ KL +L+
Sbjct: 325 -KPNKAVNQLAIWVDAKQKKQKLFDILR 351
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 146 bits (353), Expect = 3e-35
Identities = 90/251 (35%), Positives = 143/251 (56%), Gaps = 15/251 (5%)
Query: 133 PIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSR-----GDGPIALVL 187
PIQA + + L G D+VG A TG GKTL+++LP + + N P S+ G P LVL
Sbjct: 121 PIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVL 180
Query: 188 APTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLE 247
PTRELA+Q+ D + + + + CL+GG Q L GV+IV+ TPGR+ D +E
Sbjct: 181 LPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIE 240
Query: 248 SGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR--QTLMWSATWPREVQSLAS 305
+ + VLDEAD ML MGF + I+ ++ QTL++SAT P V+++++
Sbjct: 241 RQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISN 300
Query: 306 EFLK-DYLQIN-VGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMA--EKENKTIIF 361
FLK D I+ VG+ ++ A++++ I C + ++ L+ +I++ +TIIF
Sbjct: 301 RFLKRDQKTIDLVGNDKMKASNSVRHIAIPC----NKAAMARLIPDIISCYSSGGQTIIF 356
Query: 362 IETKRRVDDIT 372
ETK +V +++
Sbjct: 357 AETKVQVSELS 367
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 143 bits (347), Expect = 2e-34
Identities = 94/302 (31%), Positives = 155/302 (51%), Gaps = 16/302 (5%)
Query: 84 ESDVEAWRSENEITLKGRNIPKPTLTFDEAG-FPDYVMDE-----IDKMGFAKPTPIQAQ 137
+S+ E W++ ++ + +T + F DY + I + GF KP+PIQ +
Sbjct: 124 DSNNEDWKATLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEE 183
Query: 138 GWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQI 197
PIAL+G D++ A G+GKT ++ +P + I+ + + A++L PTRELA Q
Sbjct: 184 SIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQT 238
Query: 198 QEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCT 257
+VC + + KI GG L V +++ TPGR+LD + G LK C
Sbjct: 239 SQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCA 298
Query: 258 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQINVG 317
LV+DEAD++L + F+P I ++I+ + RQ LM+SAT+P V+S +LK IN+
Sbjct: 299 MLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINL- 357
Query: 318 SLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKMKR 377
+ + Q E +K L+TL ++ N++IIF + RV+ + +K+
Sbjct: 358 -MDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQI---NQSIIFCNSVNRVELLAKKITE 413
Query: 378 DG 379
G
Sbjct: 414 LG 415
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 143 bits (347), Expect = 2e-34
Identities = 87/268 (32%), Positives = 142/268 (52%), Gaps = 6/268 (2%)
Query: 110 FDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVH 169
F+ V + I K G+ PTPIQ + P+ LSG D+V +A TGSGKT ++++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 170 INNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLD 229
+ G AL+L+PTR+LA+Q + + + + + L GG Q +L
Sbjct: 90 LKQHVPQG---GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELT 146
Query: 230 AGVEIVIATPGRLLDFL-ESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 288
G +++IATPGRL+ L E L+ Y+V DEAD + MGF Q+ +I+ Q+ +RQ
Sbjct: 147 KGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQ 206
Query: 289 TLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLK 348
TL++SAT P + A L++ + + + L + V E EK + L L++
Sbjct: 207 TLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPE-EKYSALLYLVR 265
Query: 349 EIMAEKENKTIIFIETKRRVDDITRKMK 376
E ++ + +T+IF+ TK V+ + K
Sbjct: 266 EHIS-SDQQTLIFVSTKHHVEFVNSLFK 292
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 140 bits (340), Expect = 1e-33
Identities = 98/294 (33%), Positives = 153/294 (52%), Gaps = 13/294 (4%)
Query: 80 EKRPESDVEAWRSENEITLKG--RNIPKPTL----TFDEAGFPDYVMDEIDKMGFAKPTP 133
+K+ D EA E E+ K + + + ++ TF+ D I +MGFA+ T
Sbjct: 120 KKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQ 179
Query: 134 IQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTREL 193
IQA+ P + G D++G A TGSGKTL++++PA V + + K + +G LV+ PTREL
Sbjct: 180 IQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTREL 238
Query: 194 AQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNL 253
A Q V + + GG + +A L GV +++ATPGRLLD LE+ +
Sbjct: 239 AIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFI 298
Query: 254 -KRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKD-- 310
K +LV+DEADR+L+ FE ++KI+ + RQT ++SAT +V+ LA L
Sbjct: 299 FKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPV 358
Query: 311 YLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIET 364
Y+ ++ G ++ N + Q V + L T LK +K K ++F T
Sbjct: 359 YIDVDEGRKEV-TNEGLEQGYCVVPSAMRLLFLLTFLKRFQGKK--KIMVFFST 409
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 140 bits (338), Expect = 2e-33
Identities = 95/314 (30%), Positives = 155/314 (49%), Gaps = 21/314 (6%)
Query: 77 LDVEKRPESDV-----EAWRSENEITLKGRNIPKPTLTFDEAG-FPDYVMDE-----IDK 125
++VEK +S+V E W++ ++ +T + F DY + I +
Sbjct: 89 VEVEKTVQSEVIDPNSEDWKARLKLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYE 148
Query: 126 MGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIAL 185
GF +P+PIQ + PIAL+G D++ A G+GKT ++ +P + I+ + A+
Sbjct: 149 KGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AV 203
Query: 186 VLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDF 245
++ PTRELA Q +VC + KI GG L V +++ TPGR+LD
Sbjct: 204 IIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDL 263
Query: 246 LESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLAS 305
+ G LK C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P V+
Sbjct: 264 TKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKD 323
Query: 306 EFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETK 365
FL + IN+ + I Q E +K L+TL ++ N++IIF +
Sbjct: 324 RFLTNPYVINL--MDELTLKGITQFYAFVEERQKIHCLNTLFSKLQI---NQSIIFCNSV 378
Query: 366 RRVDDITRKMKRDG 379
RV+ + +K+ G
Sbjct: 379 NRVELLAKKITELG 392
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 140 bits (338), Expect = 2e-33
Identities = 95/314 (30%), Positives = 155/314 (49%), Gaps = 21/314 (6%)
Query: 77 LDVEKRPESDV-----EAWRSENEITLKGRNIPKPTLTFDEAG-FPDYVMDE-----IDK 125
++VEK +S+V E W++ ++ +T + F DY + I +
Sbjct: 89 VEVEKTVQSEVIDPNSEDWKARLKLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYE 148
Query: 126 MGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIAL 185
GF +P+PIQ + PIAL+G D++ A G+GKT ++ +P + I+ + A+
Sbjct: 149 KGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AV 203
Query: 186 VLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDF 245
++ PTRELA Q +VC + KI GG L V +++ TPGR+LD
Sbjct: 204 IIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDL 263
Query: 246 LESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLAS 305
+ G LK C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P V+
Sbjct: 264 TKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKD 323
Query: 306 EFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETK 365
FL + IN+ + I Q E +K L+TL ++ N++IIF +
Sbjct: 324 RFLTNPYVINL--MDELTLKGITQFYAFVEERQKIHCLNTLFSKLQI---NQSIIFCNSV 378
Query: 366 RRVDDITRKMKRDG 379
RV+ + +K+ G
Sbjct: 379 NRVELLAKKITELG 392
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 139 bits (336), Expect = 3e-33
Identities = 89/264 (33%), Positives = 144/264 (54%), Gaps = 12/264 (4%)
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
TF E G + ++ +++G+ P+ IQA+ P AL G D++G+A TGSGKT ++ +P +
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 169 HI-----NNQPKSSRGDGP--IALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPK 221
+ +++PK R P A VL+PTRELA QI E + + L GG +
Sbjct: 70 ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDR 129
Query: 222 GPQARDLDAGVEIVIATPGRLLDFLESGR-TNLKRCTYLVLDEADRMLDMGFEPQIRKII 280
Q L +++ATPGRL D + + +LK YLVLDEADR+L+ FE + +I+
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQIL 189
Query: 281 EQIRPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKE 340
E+I +R+T ++SAT ++V+ L L++ ++I S + Q V +Y K+
Sbjct: 190 EEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKY-KD 248
Query: 341 TKLSTLLKEIMAEKENKTIIFIET 364
L +L E+ E+ ++IF T
Sbjct: 249 CYLVYILSEM---PESTSMIFTRT 269
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 138 bits (333), Expect = 7e-33
Identities = 94/301 (31%), Positives = 155/301 (51%), Gaps = 5/301 (1%)
Query: 77 LDVEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQA 136
++ E+ +E E I + G+ I +TFD + I +MGF T IQA
Sbjct: 59 IEEEEEKVEAMEDGEDEKNIVIVGKGI-MTNVTFDSLDLSEQTSIAIKEMGFQYMTQIQA 117
Query: 137 QGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQ 196
L G D++G A TGSGKTL++++PA+ + + S R +G +V+ PTRELA Q
Sbjct: 118 GSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPR-NGTGVIVICPTRELAIQ 176
Query: 197 IQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNL-KR 255
+ V ++ + + GG + +A+ + +G +VIATPGRLLD L++ + + K
Sbjct: 177 TKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKH 236
Query: 256 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQIN 315
LV+DEADR+L+ FE + KI++ + RQT ++SAT +V+ LA L + ++
Sbjct: 237 LKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVD 296
Query: 316 VGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITRKM 375
V + + L+ C+ K+ +L L+ + K ++F T + V T M
Sbjct: 297 VDDGRRKVTNEGLE-QGYCVVPSKQ-RLILLISFLKKNLNKKIMVFFSTCKSVQFHTEIM 354
Query: 376 K 376
K
Sbjct: 355 K 355
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 135 bits (326), Expect = 5e-32
Identities = 83/257 (32%), Positives = 135/257 (52%), Gaps = 10/257 (3%)
Query: 123 IDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGP 182
I + GF KP+PIQ + PIAL+G D++ A G+GKT ++ +P + I+ +
Sbjct: 139 IYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ---- 194
Query: 183 IALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRL 242
A++L PTRELA Q +VC + + I GG L V +++ TPGR+
Sbjct: 195 -AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRI 253
Query: 243 LDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQS 302
LD + G LK C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P V++
Sbjct: 254 LDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKA 313
Query: 303 LASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFI 362
L+ IN+ + + Q E +K L+TL ++ N++IIF
Sbjct: 314 FKDRHLRKPYVINL--MDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQI---NQSIIFC 368
Query: 363 ETKRRVDDITRKMKRDG 379
+ RV+ + +K+ G
Sbjct: 369 NSVNRVELLAKKITELG 385
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 135 bits (326), Expect = 5e-32
Identities = 83/257 (32%), Positives = 135/257 (52%), Gaps = 10/257 (3%)
Query: 123 IDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGP 182
I + GF KP+PIQ + PIAL+G D++ A G+GKT ++ +P + I+ +
Sbjct: 139 IYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ---- 194
Query: 183 IALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRL 242
A++L PTRELA Q +VC + + I GG L V +++ TPGR+
Sbjct: 195 -AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRI 253
Query: 243 LDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQS 302
LD + G LK C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P V++
Sbjct: 254 LDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKA 313
Query: 303 LASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFI 362
L+ IN+ + + Q E +K L+TL ++ N++IIF
Sbjct: 314 FKDRHLRKPYVINL--MDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQI---NQSIIFC 368
Query: 363 ETKRRVDDITRKMKRDG 379
+ RV+ + +K+ G
Sbjct: 369 NSVNRVELLAKKITELG 385
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 133 bits (321), Expect = 2e-31
Identities = 85/272 (31%), Positives = 135/272 (49%), Gaps = 8/272 (2%)
Query: 105 KPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYIL 164
+P +F++ G + V+ + + GF KP+ IQ + L G D++ A +G+GKT L
Sbjct: 32 EPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIAL 91
Query: 165 PAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQ 224
++ + + AL+L+PTRELA Q ++ + I GG G
Sbjct: 92 SVCQVVDTSSREVQ-----ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGED 146
Query: 225 ARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 284
R L+ GV +V TPGR+ D ++ + L+LDE+D ML GF+ QI + +
Sbjct: 147 IRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLP 206
Query: 285 PDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLS 344
PD Q + SAT P E+ + S+F+ + ++I V +L I Q V +E E E K
Sbjct: 207 PDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTL-EGIKQFF-VAVEKE-EWKFD 263
Query: 345 TLLKEIMAEKENKTIIFIETKRRVDDITRKMK 376
TL + +IF TKR+VD ++ KM+
Sbjct: 264 TLCDLYDTLTITQAVIFCNTKRKVDYLSEKMR 295
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 132 bits (319), Expect = 4e-31
Identities = 91/272 (33%), Positives = 134/272 (49%), Gaps = 8/272 (2%)
Query: 105 KPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYIL 164
KP +FD+ G D V+ + G+ KP+ IQ + L G D++ A +G+GKT S I
Sbjct: 19 KPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKT-SMIA 77
Query: 165 PAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQ 224
++ I N SSR LVL+P+RELA Q ++ + I GG G
Sbjct: 78 ISVCQIVNI--SSRKVQ--VLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGED 133
Query: 225 ARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 284
+ L+ GV V TPGR+ D ++ G K LVLDE+D ML G + QI + +
Sbjct: 134 IKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALP 193
Query: 285 PDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLS 344
D Q + SAT P+E+ + +F+ D ++I V +L +DV E E K
Sbjct: 194 HDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKE---EWKFD 250
Query: 345 TLLKEIMAEKENKTIIFIETKRRVDDITRKMK 376
TL N+ IIF T+++VD +T KM+
Sbjct: 251 TLCDLYGRLTINQAIIFCNTRQKVDWLTEKMR 282
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 130 bits (315), Expect = 1e-30
Identities = 89/267 (33%), Positives = 140/267 (52%), Gaps = 20/267 (7%)
Query: 81 KRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEI-DKMGFAKPTPIQAQGW 139
KR + + E + K ++ + +F G + D++ ++MGF PT +QAQ
Sbjct: 2 KRAQQSARETKQEAKDASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAI 61
Query: 140 PIALSGHDMVGIASTGSGKTLSYILPAIVHI-NNQPKSSRGDGPIALVLAPTRELAQQIQ 198
P+ LSG D++ A TG+GKT++Y+ P I H+ + PK R G ALV+ PTREL Q+
Sbjct: 62 PVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVY 121
Query: 199 EVCDKFANTSK-IHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNL-KRC 256
E +K + I + GG K + L G+ I+IATPGRLLD L++ + + K
Sbjct: 122 ETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNL 181
Query: 257 TYLVLDEADRMLDMGFEPQIRKII--------EQIRPD--------RQTLMWSATWPREV 300
+++ DEAD +L++G+ +I +II EQ D +Q L+ SAT +V
Sbjct: 182 RWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKV 241
Query: 301 QSLASEFLKDYLQINVGSLQLAANHNI 327
LA L D + I + + +L N +I
Sbjct: 242 NDLAKLSLDDPVMIGLDNTKLQQNLSI 268
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 130 bits (315), Expect = 1e-30
Identities = 86/275 (31%), Positives = 146/275 (53%), Gaps = 8/275 (2%)
Query: 101 RNIPKPTLTFDEAGFP--DYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGK 158
+ I K F E P + +++ +D+ GF TP+QA+ P S D+V A+TGSGK
Sbjct: 7 KTITKALPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGK 66
Query: 159 TLSYILPAIVHINNQPK-SSRGDGPIALVLAPTRELAQQIQEVCDKFANT-SKIHNTCLF 216
TL+++LP I I + + ++++PTREL+ QI +V + F +T +++ L
Sbjct: 67 TLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLV 126
Query: 217 GGAPKGPQARDLDA-GVEIVIATPGRLLDFLESGR-TNLKRCTYLVLDEADRMLDMGFEP 274
GG L+ G ++I TPGRL D ++ + + L+LDEADR+LDMGF+
Sbjct: 127 GGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQK 186
Query: 275 QIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVC 334
Q+ II ++ R+T ++SAT + V LA L++ +++ G+ + + L
Sbjct: 187 QVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYC--EY 244
Query: 335 MEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVD 369
++ E + K S L+ ++ K K ++F T VD
Sbjct: 245 LKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVD 279
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 128 bits (309), Expect = 6e-30
Identities = 85/259 (32%), Positives = 132/259 (50%), Gaps = 4/259 (1%)
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
TF E ++ + +G+ KPTPIQA P+AL+G D+ A TGSGKT ++ LP +
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 169 HINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDL 228
+ +PK R L+L PTRELA QI + A + I + GG Q L
Sbjct: 228 RLLFRPK--RVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVL 285
Query: 229 DAGVEIVIATPGRLLDFLESGRT-NLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 287
+ +IV+ATPGR++D L + + +L L+LDEADR+L GF +I +++ R
Sbjct: 286 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRR 345
Query: 288 QTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLL 347
QT+++SAT EV+ L L L+++ +++ + E + + LL
Sbjct: 346 QTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQE-AVLL 404
Query: 348 KEIMAEKENKTIIFIETKR 366
++K IIF TK+
Sbjct: 405 SLCTRTFKSKVIIFSGTKQ 423
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 128 bits (309), Expect = 6e-30
Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 15/307 (4%)
Query: 75 PHLDVEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEA----GFPDYVMDEIDKMGFAK 130
P ++ ++ E D + R + I + G NIP P +F E G Y++ + ++GF +
Sbjct: 105 PKKELNRQMERDALS-RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKE 163
Query: 131 PTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPT 190
PTPIQ Q PI LSG + A TGSGKT ++I P ++ + K DG A++L+P
Sbjct: 164 PTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKL----KRPSTDGIRAVILSPA 219
Query: 191 RELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGR 250
RELA Q K S H + K L +++I+TP RL +++ +
Sbjct: 220 RELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKL--WCDVLISTPMRLKRAIKAKK 277
Query: 251 TNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQTLMWSATWPREVQSLASEFLK 309
+L + YLVLDE+D++ + QI +++ P ++SAT P V+ LA +
Sbjct: 278 IDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMH 337
Query: 310 DYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVD 369
D +++ +G + A+ + Q + +E KL L + +IF+++K R
Sbjct: 338 DAVRVIIGR-KNTASETVKQ--KLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAK 394
Query: 370 DITRKMK 376
++ ++K
Sbjct: 395 ELYDELK 401
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 127 bits (307), Expect = 1e-29
Identities = 90/268 (33%), Positives = 134/268 (50%), Gaps = 8/268 (2%)
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
+FD G + ++ I GF KP+ IQ +G G D++ A +G+GKT ++ +
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ 99
Query: 169 HINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDL 228
++ + ALVLAPTRELAQQI++V + + GG R L
Sbjct: 100 QLDFSLIQCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 154
Query: 229 DAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 288
AGV +V+ TPGR+ D L+ VLDEAD ML GF+ QI I + + P Q
Sbjct: 155 QAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ 214
Query: 289 TLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLK 348
++SAT P E + +F+ ++I V +L I Q V +E E E KL TL
Sbjct: 215 VGVFSATMPPEALEITRKFMSKPVRILVKRDELTL-EGIKQFY-VNVEKE-EWKLETLCD 271
Query: 349 EIMAEKENKTIIFIETKRRVDDITRKMK 376
+++IF+ T+R+VD +T KM+
Sbjct: 272 LYETLAITQSVIFVNTRRKVDWLTDKMR 299
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 127 bits (306), Expect = 1e-29
Identities = 89/297 (29%), Positives = 145/297 (48%), Gaps = 17/297 (5%)
Query: 80 EKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGW 139
++RP S V E+ I K + + + F E G + VM + ++ PT IQ G
Sbjct: 88 QQRPSSVVGV-EEESSIRKKSKKLVE---NFQELGLSEEVMGALQELNIEVPTEIQCIGI 143
Query: 140 PIALSGHDMVGIASTGSGKTLSYILPAIVHIN----NQPKSSRGDGPIALVLAPTRELAQ 195
P + +V + TGSGKTL+Y+LP + + N K ++ P +VL PTREL++
Sbjct: 144 PAVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSE 203
Query: 196 QIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKR 255
Q+ V ++ ++ + + GG+ PQ L+ +++V+ TPGR+L +E G
Sbjct: 204 QVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGD 263
Query: 256 CTYLVLDEADRMLDMGFEPQIRKIIEQIRP------DR--QTLMWSATWPREVQSLASEF 307
YLVLDEAD M D GF P+IRK + + D+ QT++ +AT VQ L E
Sbjct: 264 IAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEE 323
Query: 308 LKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIET 364
+ + +L + I + +K L +L+ +A K +K ++F T
Sbjct: 324 FQGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEALLQVLEPSLA-KGSKVMVFCNT 379
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 127 bits (306), Expect = 1e-29
Identities = 72/197 (36%), Positives = 109/197 (55%), Gaps = 8/197 (4%)
Query: 110 FDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVH 169
F+ G ++ ++ ++G KPTP+Q P L+G D++G+A TGSGKT ++ LP +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 170 INNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLD 229
+ P G ALV+ PTRELA Q+ E + + + + GG Q L
Sbjct: 120 LAEDPY-----GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLV 174
Query: 230 AGVEIVIATPGRLLDFLESG---RTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 286
+ IVI TPGR+ LE+ R +LVLDEADR+LD+GF+ ++R I + +
Sbjct: 175 SRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKS 234
Query: 287 RQTLMWSATWPREVQSL 303
RQTL++SAT +Q+L
Sbjct: 235 RQTLLFSATMTSNLQAL 251
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 126 bits (305), Expect = 2e-29
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 4/238 (1%)
Query: 132 TPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTR 191
T +Q+ P AL G D++G A TGSGKTL++++P + ++ + + S DG ++++PTR
Sbjct: 95 TDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTR 153
Query: 192 ELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFL-ESGR 250
ELA Q V +K K L GG ++ + I++ PGRLL + E+
Sbjct: 154 ELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPN 213
Query: 251 TNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKD 310
+ L+LDEADR+LD F+ Q+ II Q+ RQTL++SAT ++V+ LA L+D
Sbjct: 214 FECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRD 273
Query: 311 YLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKRRV 368
I+V + + A ++ M E KL L I ++ ++F+ TK++V
Sbjct: 274 PEYISVHAEAVTATPT--SLMQTVMIVPVEKKLDMLWSFIKTHLNSRILVFLSTKKQV 329
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 126 bits (303), Expect = 3e-29
Identities = 99/302 (32%), Positives = 147/302 (48%), Gaps = 15/302 (4%)
Query: 78 DVEKRPESDVEAWRSENEITL-KGRNIPKPTLT---FDEAGFPDYVMDEIDKMGFAKPTP 133
D K+ + EN I K RN LT FD + I G+ T
Sbjct: 20 DFLKKKAVSAFGFDKENVIEADKTRNANDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTV 79
Query: 134 IQAQGWPIALSGHDMVGIASTGSGKTLSYILPAI-VHINNQPKSSRGDGP--IALVLAPT 190
+Q PI L G D++ A TG+GKT++++LP+I V + + P S P +ALV+ PT
Sbjct: 80 VQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPT 139
Query: 191 RELAQQIQEVCDKFANTS-KIHNTCLFGGAPKGPQARDLDAG-VEIVIATPGRLLDFLES 248
RELA Q + I + GG G + + + +I++ATPGRL D +E+
Sbjct: 140 RELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIEN 199
Query: 249 G---RTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLAS 305
T LK LVLDEAD +LDMGF I +II + +RQT ++SAT P EV+ +
Sbjct: 200 TPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQICL 259
Query: 306 EFL-KDYLQINVGSLQLAANHNILQIIDVCMEYEKE-TKLSTLLKE-IMAEKENKTIIFI 362
L +D+ +N H ++ + + ++ + L TLL+E IM + K I+F
Sbjct: 260 VALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYTLLREHIMGNVDYKVIVFC 319
Query: 363 ET 364
T
Sbjct: 320 TT 321
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 125 bits (301), Expect = 6e-29
Identities = 89/268 (33%), Positives = 133/268 (49%), Gaps = 8/268 (2%)
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
+FD G + ++ I GF KP+ IQ +G G D++ A +G+GKT ++ +
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ 99
Query: 169 HINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDL 228
++ + ALVLAPTRELAQQI++V + + GG R L
Sbjct: 100 QLDYALLQCQ-----ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRIL 154
Query: 229 DAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 288
AGV +V+ TPGR+ D L VLDEAD ML GF+ QI I + + P Q
Sbjct: 155 QAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ 214
Query: 289 TLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLK 348
++SAT P E + +F+ ++I V +L I Q V +E E + KL TL
Sbjct: 215 VGVFSATMPPEALEITRKFMSKPVRILVKRDELTL-EGIKQFY-VNVEKE-DWKLETLCD 271
Query: 349 EIMAEKENKTIIFIETKRRVDDITRKMK 376
+++IF+ T+R+VD +T KM+
Sbjct: 272 LYETLAITQSVIFVNTRRKVDWLTDKMR 299
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 124 bits (299), Expect = 1e-28
Identities = 94/266 (35%), Positives = 130/266 (48%), Gaps = 11/266 (4%)
Query: 110 FDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVH 169
FD+ + I GF T +Q PI L G D++ A TG+GKT++++LPAI
Sbjct: 384 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 443
Query: 170 INNQPKSSRGDGP---IALVLAPTRELAQQIQEVCDKFANTS-KIHNTCLFGGAPKGPQA 225
+ P +SR I LV+ PTRELA Q + I + GG +
Sbjct: 444 VIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQ 503
Query: 226 RDLDAG-VEIVIATPGRLLDFLE--SG-RTNLKRCTYLVLDEADRMLDMGFEPQIRKIIE 281
R + +I++ATPGRL D +E SG T L LVLDEAD +LDMGF I +II
Sbjct: 504 RRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIA 563
Query: 282 QIRPDRQTLMWSATWPREVQSLASEFLK-DYLQINVGSLQLAANH-NILQIIDVCMEYEK 339
+ RQT ++SAT P EV+ + LK D+ IN H + Q+ +
Sbjct: 564 AVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRH 623
Query: 340 ETKLSTLLKEIMAEK-ENKTIIFIET 364
+ L LLKE +A+ + K IIF T
Sbjct: 624 FSLLHVLLKEHIADNVDYKVIIFCTT 649
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 119 bits (287), Expect = 3e-27
Identities = 78/262 (29%), Positives = 138/262 (52%), Gaps = 11/262 (4%)
Query: 119 VMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPK-SS 177
+++ +++ F TP+QA P+ S D+ A+TGSGKTL++++P + +
Sbjct: 27 IIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP 86
Query: 178 RGDGPIALVLAPTRELAQQIQEVCDKFANT-SKIHNTCLFGGAPKGPQARDLDA-GVEIV 235
+ + ++++PTREL+ QI V F +T + +++ L GG + ++ G ++
Sbjct: 87 KPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVL 146
Query: 236 IATPGRLLDFLESGRT-NLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 294
I TPGRL D +E + + L+LDEADR+L+MGF+ Q+ II ++ R+T ++SA
Sbjct: 147 IGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSA 206
Query: 295 TWPREVQSLASEFLKDYLQINV-------GSLQLAANHNILQIIDVCMEYEKETKLSTLL 347
T V+ LA L++ +++ V S QL + + ME E + K S L+
Sbjct: 207 TQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKSSQLV 266
Query: 348 KEIMAEKENKTIIFIETKRRVD 369
++ + K I+F T VD
Sbjct: 267 DLLIKNSDKKLIVFFMTCASVD 288
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 117 bits (282), Expect = 1e-26
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 5/215 (2%)
Query: 137 QGWPIALSGHDMVGIASTGSGKTLSYILPAIVHI---NNQPKSSRGDGPIALVLAPTREL 193
Q P AL+G ++ A TGSGKT S+++P I +++ S + P+A+VLAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 194 AQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNL 253
Q+++ + GG P Q + GVE++I TPGR++D L L
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIEL 121
Query: 254 KRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQ 313
VLDE D ML GF Q+ +I + + Q L++SAT REV+ + K+ +
Sbjct: 122 DNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVEKVGGSLAKEIIL 180
Query: 314 INVGSLQLAANHNILQIIDVCMEYEKETKLSTLLK 348
+++G+ N + Q+ +K+ KL +L+
Sbjct: 181 VSIGNPN-KPNKAVNQLAIWVDAKQKKQKLFDILR 214
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 117 bits (281), Expect = 1e-26
Identities = 84/268 (31%), Positives = 128/268 (47%), Gaps = 8/268 (2%)
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
+FD ++ I GF KP+ IQ +G G D++ A +G+GKT ++ +
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQ 101
Query: 169 HINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDL 228
++ + ALVLAPTRELAQQI++V + + GG R L
Sbjct: 102 QLDISLVQCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVL 156
Query: 229 DAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 288
+GV +V+ TPGR+ D L VLDEAD ML GF+ QI I + + Q
Sbjct: 157 QSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQ 216
Query: 289 TLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLK 348
++SAT P E + +F+ ++I V +L ++V E E KL TL
Sbjct: 217 VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKE---EWKLETLCD 273
Query: 349 EIMAEKENKTIIFIETKRRVDDITRKMK 376
+++IF+ T+R+VD +T KM+
Sbjct: 274 LYETLAITQSVIFVNTRRKVDWLTDKMR 301
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 116 bits (278), Expect = 3e-26
Identities = 92/267 (34%), Positives = 136/267 (50%), Gaps = 12/267 (4%)
Query: 110 FDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVH 169
FDE+ + + G K T +Q L G D + A TG+GK+++++LPAI
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 170 INNQPKSSRGDGPIA----LVLAPTRELAQQIQ-EVCDKFANTSKIHNTCLFGGAP-KGP 223
+ S +G +A L+L PTRELA QI E N I L GG +
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLD 496
Query: 224 QARDLDAGVEIVIATPGRLLDFLE--SGRTN-LKRCTYLVLDEADRMLDMGFEPQIRKII 280
Q R +I+IATPGRLLD +E SG T+ L ++DEAD +LD+GF+ + KII
Sbjct: 497 QQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKII 556
Query: 281 EQIRPDRQTLMWSATWPREVQSLASEFLK-DYLQINVGSLQLAANHNILQIIDVCMEYEK 339
+ + RQ+L++SAT P+EV+ ++ LK D+ I+ L H+ ++ + +E
Sbjct: 557 DCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHES 616
Query: 340 ETKL-STLLKE-IMAEKENKTIIFIET 364
L LLKE I + K I+F T
Sbjct: 617 HFHLVPHLLKEHINNMPDYKIIVFCST 643
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 115 bits (276), Expect = 6e-26
Identities = 91/268 (33%), Positives = 137/268 (51%), Gaps = 14/268 (5%)
Query: 110 FDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVH 169
FDE+ + + G K T +Q L G D + A TG+GK+++++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 170 INNQPKSSRGDGPIA----LVLAPTRELAQQIQ---EVCDKFANTSKIHNTCLFGGAPKG 222
+ S +G +A L+L PTRELA QI + KF + + T + G K
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ-TLIGGTRFKL 448
Query: 223 PQARDLDAGVEIVIATPGRLLDFLE--SGRTN-LKRCTYLVLDEADRMLDMGFEPQIRKI 279
Q R +I+IATPGRLLD +E SG T+ L ++DEAD +LD+GF + KI
Sbjct: 449 DQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKI 508
Query: 280 IEQIRPDRQTLMWSATWPREVQSLASEFLK-DYLQINVGSLQLAANHNILQIIDVCMEYE 338
I+ + RQ+L++SAT P+EV+ ++ LK D+ I+ L H+ ++ + +E
Sbjct: 509 IDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHE 568
Query: 339 KETKL-STLLKE-IMAEKENKTIIFIET 364
L LLKE I + K I+F T
Sbjct: 569 SHFHLVPHLLKEHINNTPDYKIIVFCST 596
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 113 bits (272), Expect = 2e-25
Identities = 92/280 (32%), Positives = 133/280 (47%), Gaps = 14/280 (5%)
Query: 110 FDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVH 169
FD+ + I+ GF T +Q P+ L G D++ A TG+GKT++++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 170 INNQPKSSRGDGP---IALVLAPTRELA-QQIQEVCDKFANTSKIHNTCLFGGAPKGPQA 225
+ P +SR + I LV+ PTRELA Q E I + GG +
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201
Query: 226 RDLDAG-VEIVIATPGRLLDFLE--SG-RTNLKRCTYLVLDEADRMLDMGFEPQIRKIIE 281
R L +I++ATPGRL D ++ SG T L LVLDEAD +LDMGF +I +II
Sbjct: 202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIA 261
Query: 282 QIRPDRQTLMWSATWPREVQSLASEFLK-DYLQINVGSLQLAANHNILQIIDVCMEYEKE 340
+ RQT ++SAT EV+ + LK D+ +N H + + + ++
Sbjct: 262 AVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRH 321
Query: 341 TKL--STLLKEIMAEKENKTIIFIET---KRRVDDITRKM 375
L L K I K IIF T R V D+ K+
Sbjct: 322 FSLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKL 361
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 111 bits (268), Expect = 6e-25
Identities = 73/218 (33%), Positives = 110/218 (50%), Gaps = 28/218 (12%)
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
+F+E G PD ++D +++ GF+ PT +Q+ P + GHD V + TGSGKTL+Y+LP +
Sbjct: 111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILS 170
Query: 169 HINNQPKSSRGDGP--------IALVLAPTRELAQQIQEVCDKFANTSKIHNTC---LFG 217
I + SR A+++AP+REL QI +K +H L G
Sbjct: 171 EIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKL--LGPVHRRMVQQLVG 228
Query: 218 GAPKGPQARDLDAG-VEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQI 276
GA + Q L IV+ TPGR+ + + G+ + C +LVLDE D +L F I
Sbjct: 229 GANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDI 288
Query: 277 RKIIEQI--------------RPDRQTLMWSATWPREV 300
+I+E + R +RQT++ SAT P V
Sbjct: 289 HRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSV 326
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 109 bits (261), Expect = 4e-24
Identities = 90/311 (28%), Positives = 144/311 (46%), Gaps = 21/311 (6%)
Query: 86 DVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSG 145
D++ WR N+ TF E G + +M + + F +P IQA + + G
Sbjct: 352 DMDDWRERNKTKDTRETGFFSRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDG 411
Query: 146 HDMVGIASTGSGKTLSYILPAIVHINNQ-----PKSSRGDGPIALVLAPTRELAQQIQEV 200
+ +GSGKTL+Y++P I + + KSS G P +VL PT ELA Q+
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPG-CPRVIVLVPTAELASQVLAN 470
Query: 201 CDKFANTS-KIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYL 259
C + + + + GG + Q +L+ GV+++IATPGR + G L
Sbjct: 471 CRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCA 530
Query: 260 VLDEADRML-DMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQINVGS 318
+LDE D + D FE ++ +I Q L +AT P E+ + E D ++ +G
Sbjct: 531 ILDEVDILFGDDEFEAALQNLINSSPVTAQYLFVTATLPLEIYNKLVEVFPD-CEVVMGP 589
Query: 319 LQLAANHNILQIIDVC-----MEYEKETKL---STLLKEIMAEKE-NKTIIF---IETKR 366
++ + + + C E ET T L +IM E +KTIIF IET R
Sbjct: 590 RVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCR 649
Query: 367 RVDDITRKMKR 377
+V++I +++ R
Sbjct: 650 KVENIFKRVDR 660
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 108 bits (259), Expect = 7e-24
Identities = 87/297 (29%), Positives = 135/297 (45%), Gaps = 15/297 (5%)
Query: 78 DVEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQ 137
+VEK E + + E E K PK +F+E G ++ + K G KPT IQ
Sbjct: 19 EVEKAEEVEEQRNDREQEEEQKEEEAPK---SFEELGLDSRLIRALTKKGIEKPTLIQQS 75
Query: 138 GWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGD-GPIALVLAPTRELAQQ 196
P L G D+V A TGSGKTL+Y+LP + + + S+ P A +L P+REL QQ
Sbjct: 76 AIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQ 135
Query: 197 IQEVCDKFANTSKIH-NTCLFGGAPKGPQARDLDAGV-EIVIATPGRLLDFLESG----R 250
+ ++ + R+ AG+ EI+++TP + +G
Sbjct: 136 VYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPT 195
Query: 251 TNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKD 310
+ + LVLDEAD +L G+E +R + I Q L+ SAT +V+ L L +
Sbjct: 196 AVSESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHN 255
Query: 311 YLQINV---GSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIET 364
+ + + + A N+ Q C +K + LLK + +K K +IFI T
Sbjct: 256 PIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLKLEVVQK--KILIFINT 310
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 107 bits (258), Expect = 9e-24
Identities = 83/298 (27%), Positives = 142/298 (47%), Gaps = 18/298 (6%)
Query: 84 ESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDE-----IDKMGFAKPTPIQAQG 138
E D + S N++ G + K + +GF D+++ I GF P+ +Q +
Sbjct: 19 EEDEKVPDSGNKVN--GEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
Query: 139 WPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQ 198
P A+ G D++ A +G GKT ++L + I P ALVL TRELA QI
Sbjct: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVS-----ALVLCHTRELAYQIC 131
Query: 199 EVCDKFANTSKIHNTCLFGGAPKGPQARDL--DAGVEIVIATPGRLLDFLESGRTNLKRC 256
+F+ +F G +DL + IV+ TPGR+L +LK
Sbjct: 132 NEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNV 191
Query: 257 TYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQIN 315
+ +LDE D+ML+ + +++I + D+Q +M+SAT +E++ + +F++D ++I
Sbjct: 192 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY 251
Query: 316 VGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITR 373
V H ++Q E EK KL+ LL A N+ +IF+++ R ++ +
Sbjct: 252 VDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLD---ALDFNQVVIFVKSVSRAAELNK 306
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 107 bits (257), Expect = 1e-23
Identities = 83/298 (27%), Positives = 142/298 (47%), Gaps = 18/298 (6%)
Query: 84 ESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDE-----IDKMGFAKPTPIQAQG 138
E D + S N++ G + K + +GF D+++ I GF P+ +Q +
Sbjct: 19 EEDEKVPDSGNKVN--GEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHEC 76
Query: 139 WPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQ 198
P A+ G D++ A +G GKT ++L + I P ALVL TRELA QI
Sbjct: 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVS-----ALVLCHTRELAYQIC 131
Query: 199 EVCDKFANTSKIHNTCLFGGAPKGPQARDL--DAGVEIVIATPGRLLDFLESGRTNLKRC 256
+F+ +F G +DL + IV+ TPGR+L +LK
Sbjct: 132 NEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNV 191
Query: 257 TYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQIN 315
+ +LDE D+ML+ + +++I + D+Q +M+SAT +E++ + +F++D ++I
Sbjct: 192 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY 251
Query: 316 VGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITR 373
V H ++Q E EK KL+ LL A N+ +IF+++ R ++ +
Sbjct: 252 VDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLD---ALDFNQVVIFVKSVSRAAELNK 306
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 101 bits (243), Expect = 6e-22
Identities = 68/199 (34%), Positives = 110/199 (55%), Gaps = 11/199 (5%)
Query: 119 VMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPK-SS 177
+++ +D+ GF TP+QA+ P S D+V A+TGSGKTL+++LP I I
Sbjct: 28 IIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
Query: 178 RGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNT-CLFGGAPKGPQARDLDAGVEIVI 236
+ + ++++PTREL+ QI +V A ++ C A + G ++I
Sbjct: 88 KPHQVMGVIISPTRELSAQIHKV----ARAVRLDFAKCREVEADMNTLEEE---GANLLI 140
Query: 237 ATPGRLLDFLESGR-TNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAT 295
TPGRL D ++ + + L+LDEADR+LDMGF+ Q+ II ++ R+T ++SAT
Sbjct: 141 GTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSAT 200
Query: 296 WPREVQSLASEFLKD-YLQ 313
+ V LA L++ YL+
Sbjct: 201 QTQAVADLAKAGLRNPYLK 219
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 99.5 bits (237), Expect = 3e-21
Identities = 87/311 (27%), Positives = 146/311 (46%), Gaps = 19/311 (6%)
Query: 80 EKRPESDVEAWRSENEITLKGRNIPKPTLT-FDEAGF-PDYVMDEIDKMGFAKPTPIQAQ 137
E++P+S +E N + + P + + F++ P+ + +M F KP+ IQA
Sbjct: 62 EEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAI 121
Query: 138 GWPIALSG--HDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQ 195
P+ ++ ++ A GSGKT ++L + ++ + P AL + PTRELA
Sbjct: 122 SLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLRE-----PQALCICPTRELAN 176
Query: 196 QIQEVCDKFANTSKIHNTCLFGGAPKGPQA--RDLDAGVEIVIATPGRLLDFLESGRTNL 253
Q EV K + I + +G A R +VI TPG L ++ R L
Sbjct: 177 QNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGL 236
Query: 254 KRCTYLVLDEADRMLDM-GFEP---QIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLK 309
LV DEAD ML GF +I K I ++ P+ Q L++SAT+ V+ + +K
Sbjct: 237 NHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVK 296
Query: 310 DYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKE-NKTIIFIETKRRV 368
D Q+ V LA + ++ Q VC +++ K+ + +IM + +TIIF++TK
Sbjct: 297 DPNQLFVKREDLALD-SVKQYKVVCP--KEQNKIEVIKDQIMELGDIGQTIIFVKTKASA 353
Query: 369 DDITRKMKRDG 379
+ + + G
Sbjct: 354 QKVHKALAEMG 364
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 91.5 bits (217), Expect = 8e-19
Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 11/230 (4%)
Query: 147 DMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFAN 206
D++ A +G GKT ++L + I P ALVL TRELA QI +F+
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVS-----ALVLCHTRELAYQICNEFVRFST 56
Query: 207 TSKIHNTCLFGGAPKGPQARDL--DAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEA 264
+F G +DL + IV+ TPGR+L +LK + +LDE
Sbjct: 57 YLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDEC 116
Query: 265 DRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAA 323
D+ML+ + +++I + D+Q +M+SAT +E++ + +F++D ++I V
Sbjct: 117 DKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLT 176
Query: 324 NHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDITR 373
H ++Q E EK KL+ LL A N+ +IF+++ R ++ +
Sbjct: 177 LHGLVQHYIKLSEMEKTRKLNDLLD---ALDFNQVVIFVKSVSRAAELNK 223
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 90.2 bits (214), Expect = 2e-18
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 19/182 (10%)
Query: 119 VMDEIDKMGFAKPTPIQAQGWPIAL-SGHDMVGIASTGSGKTLSYILPAIVHI------- 170
+M I ++ F +PT IQ + +A G D++G A TGSGKTL++ LP + +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 171 -------NNQPKSSRGDGPI-ALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKG 222
+ + DG + AL++ PTRELA Q+ E + A + + GG
Sbjct: 261 GKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSE 320
Query: 223 PQARDLDAGVEIVIATPGRLLDFLESGR---TNLKRCTYLVLDEADRMLDMGFEPQIRKI 279
Q R L EIV+ATPGRL + + +G L ++ VLDEADRM++ G +++ I
Sbjct: 321 KQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSI 380
Query: 280 IE 281
++
Sbjct: 381 LD 382
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 77.0 bits (181), Expect = 2e-14
Identities = 71/260 (27%), Positives = 122/260 (46%), Gaps = 16/260 (6%)
Query: 114 GF-PDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINN 172
GF P++++ ++++GF PT IQ + P +G D + A TGSGKTL+Y+L IN
Sbjct: 81 GFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINP 140
Query: 173 QPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIH-NTC-----LFGGAPKGPQAR 226
Q S + A+++ PTREL Q+ +V A S+I C L GG + ++
Sbjct: 141 QRSSVQ-----AVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSW 195
Query: 227 DLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFE-PQIRKIIEQIR- 284
I++AT L LE + LV+DE D + + +RK++
Sbjct: 196 LKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSS 255
Query: 285 -PDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNI-LQIIDVCMEYEKETK 342
RQT+ SA+ P+ + + + + +V + ++A + L ++ + EK K
Sbjct: 256 CDKRQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNK 315
Query: 343 LSTLLKEIMAEKENKTIIFI 362
LL + ++ IIF+
Sbjct: 316 HQVLLALLESDAPESAIIFV 335
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 76.6 bits (180), Expect = 3e-14
Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 18/212 (8%)
Query: 92 SENEITLKGRN--IPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMV 149
+E E+ KG + T+++ G D V + GF +P+ QA P LSG D++
Sbjct: 62 TEAEVEKKGNDTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVI 121
Query: 150 GIASTGSGKTLSYILPAIVHINNQPKSS----RGDGP-----IALVLAPTRELAQQIQEV 200
A TGSGKT Y+ P I + N S R + P I+L+L P L +Q+ +
Sbjct: 122 VAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRM 181
Query: 201 CDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLE---SGRTNLKRCT 257
+ + N L A G Q D +I+++TP LL+ +E + R RC
Sbjct: 182 VNGLVDED--GNPLLRVEAVCGSQGWP-DRLPDIIVSTPAALLNNIEPKRNRRLEFLRCV 238
Query: 258 -YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 288
Y+V DEAD +L F+ QI ++I +R D +
Sbjct: 239 KYVVFDEADMLLCGSFQNQIIRLINMLRFDEK 270
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 69.3 bits (162), Expect = 4e-12
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 7/189 (3%)
Query: 179 GDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDA-GVEIVIA 237
G+ P L L P++ A Q++ VC IH L GAP Q L + E ++A
Sbjct: 194 GNSPFLLYLVPSQSKASQVRSVCKALKGIG-IHTVSLHQGAPLDHQISGLKSVEPEFIVA 252
Query: 238 TPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 297
TP RLL+ + ++ + LV+DE + G+ ++ I + I QT++++ ++
Sbjct: 253 TPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFS 312
Query: 298 REVQSLASEFLKDYL-QINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKEN 356
+ FL + ++ V + I Q + VC EK KL K + + +
Sbjct: 313 ASIIPAVQSFLGGSVNRVTVNESVASQGSCITQTVSVCASEEK--KLQKFAKHL--DSSS 368
Query: 357 KTIIFIETK 365
+I+I TK
Sbjct: 369 SKLIYIVTK 377
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 68.9 bits (161), Expect = 5e-12
Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 30/199 (15%)
Query: 123 IDKMGFAKPTPIQAQGW--PIALSG--HDMVGIASTGSGKTLSYILPAIVHINNQPKSSR 178
++ MG + P+Q W I G D+ + TGSGKTLSY LP + + ++P
Sbjct: 36 LENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCL 95
Query: 179 GDGPIALVLAPTRELAQQIQEVCDKFANT------SKIHNTCLFGGAP---KGPQ----- 224
ALV+ PTR+LA Q+++V D A S + + + G K P+
Sbjct: 96 R----ALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGI 151
Query: 225 -------ARDLDAGVEIVIATPGRLLDFLESGR-TNLKRCTYLVLDEADRMLDMGFEPQI 276
+++L++ V+I++ATPGRL+D + + + L+ YLV+DE DR+L ++ +
Sbjct: 152 CYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWL 211
Query: 277 RKIIEQIRPDRQTLMWSAT 295
+++ + +L S T
Sbjct: 212 PTVLQLTQTSDDSLFPSFT 230
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 32.3 bits (70), Expect = 0.55
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 249 GRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 287
GR LK+ LVLDEA +D + I+KII Q DR
Sbjct: 934 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 972
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 32.3 bits (70), Expect = 0.55
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 249 GRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 287
GR LK+ LVLDEA +D + I+KII Q DR
Sbjct: 1387 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 1425
>At4g16400.1 68417.m02482 expressed protein
Length = 209
Score = 31.9 bits (69), Expect = 0.73
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 244 DFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPR--EVQ 301
D E +T +RC + L + PQ + +P QT++ W +V
Sbjct: 36 DAAEQEKTGTRRCIKITLTRKQLEQLLQQNPQGVSFQRKWKPSLQTIVEKILWLLICKVT 95
Query: 302 SLASEFLKDYLQINVGSLQLAA-NHNILQIIDVCMEYEKETKLSTLLKEIMA 352
+L EFL D ++ L L NH ++I MEY ++ ++ I+A
Sbjct: 96 ALVMEFL-DSTSLHFSPLSLTKFNHKEMEIQAKLMEYRFHFMVTIMVSVIVA 146
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 31.5 bits (68), Expect = 0.96
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 135 QAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELA 194
QA+ AL+G ++ T SGK+L Y +P + S AL L PT+ LA
Sbjct: 398 QAEAISAALAGKNVAVATMTSSGKSLCYNVPVFEELCKDTNS------CALYLFPTKALA 451
Query: 195 Q-QIQEVCD 202
Q Q++ + D
Sbjct: 452 QDQLRALSD 460
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 143 LSGHDMVGIASTGSGKTLSYILPAIV 168
+SG D+ + TG GK+L+Y LPA++
Sbjct: 466 MSGSDVFVLMPTGGGKSLTYQLPALI 491
>At4g25450.1 68417.m03665 ABC transporter family protein similar to
multidrug resistance protein 2 SP:P21440 from [Mus
musculus]
Length = 714
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 250 RTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLM 291
R+ LK L+LDEA LD E ++ + ++ DR TL+
Sbjct: 623 RSLLKNAPILILDEATSALDAVSERLVQSALNRLMKDRTTLV 664
>At5g41140.1 68418.m05001 expressed protein
Length = 983
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 295 TWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLS-TLLKEIMAE 353
T PR+ +S+ D L+ +G+L + + L++ + + KETK S LL+E+ +
Sbjct: 278 TIPRDTTRTSSDNEVDKLKAELGALARRTDLSELELQSLRKQIVKETKRSQDLLREVTSL 337
Query: 354 KENKTII 360
K+ + ++
Sbjct: 338 KQERDLL 344
>At3g62700.1 68416.m07043 glutathione-conjugate transporter, putative
similar to glutathione-conjugate transporter AtMRP4
GI:2959767 from [Arabidopsis thaliana]
Length = 1539
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 249 GRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQ 282
GR LKR L LDEA +D + I+KII +
Sbjct: 1445 GRVMLKRSRILFLDEATASVDSQTDAMIQKIIRE 1478
>At3g02290.2 68416.m00211 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger motif, C3HC4 type
(RING finger)
Length = 231
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 299 EVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTL---LKEIMAEKE 355
EV+ L S+ D VG + A N + L D EY ++ L L K IMA+ E
Sbjct: 110 EVEPLRSDSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSE 169
Query: 356 NKTII 360
N I+
Sbjct: 170 NMYIL 174
>At3g02290.1 68416.m00210 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger motif, C3HC4 type
(RING finger)
Length = 231
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 299 EVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTL---LKEIMAEKE 355
EV+ L S+ D VG + A N + L D EY ++ L L K IMA+ E
Sbjct: 110 EVEPLRSDSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSE 169
Query: 356 NKTII 360
N I+
Sbjct: 170 NMYIL 174
>At4g23380.1 68417.m03371 hypothetical protein predicted proteins,
Arabidopsis thaliana
Length = 400
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 95 EITLKGRNIPKPTLTFDEAGFPDYVMDE-IDKMGFAKPTPIQAQGWPIALSGH 146
++ LKG + P T+ D + + + +GF P + +QG I LSGH
Sbjct: 109 QLQLKGISCPHGTVIVKRTTIQDLINSQHLKSIGFNIPRHVLSQGSNIDLSGH 161
>At3g62310.1 68416.m07000 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 726
Score = 28.7 bits (61), Expect = 6.8
Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 253 LKRCTYLVLDEA-DRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDY 311
L+R ++LDEA +R L + K + + RPD + ++ SAT L +E +DY
Sbjct: 178 LERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSAT-------LEAEKFQDY 230
Query: 312 LQINVGSLQLAANHNILQIIDVCMEYEK---ETKLSTLLKEIMAEKENKTIIFIETKRRV 368
+++ + ++I E E+ E + T+++ M E ++F+ + +
Sbjct: 231 FS-GAPLMKVPGRLHPVEIF-YTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEI 288
Query: 369 DDITRKMKRD 378
+D RK+ ++
Sbjct: 289 EDACRKINKE 298
>At3g21250.1 68416.m02685 ABC transporter family protein similar to
MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
thaliana]
Length = 1294
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 249 GRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQ 282
GR LKR LVLDEA +D + I++II +
Sbjct: 1193 GRVLLKRNKILVLDEATASIDSATDAIIQRIIRE 1226
>At1g58060.1 68414.m06580 helicase domain-containing protein
contains similarity to SP|P24785 Dosage compensation
regulator (Male-less protein) (No action potential
protein) {Drosophila melanogaster}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 1459
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 154 TGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFA 205
TG G+ SY + + + + K+ + G + L L P E + I++ +K A
Sbjct: 433 TGEGRNFSYTVSILRKASGRGKNRQAGGLVTLQLPPKDENFESIEDAQNKVA 484
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 28.7 bits (61), Expect = 6.8
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 12/187 (6%)
Query: 142 ALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVC 201
AL + +V + TG GKTL + A+V N +G A AP+R L Q E C
Sbjct: 126 ALFSNTLVALP-TGLGKTL---IAAVVMYNYFRWFPQGKIVFA---APSRPLVMQQIEAC 178
Query: 202 DKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVL 261
+ L G +A L + TP L ++SG LV+
Sbjct: 179 HNIVGIPQEWTIDLTGQTCPSKRAF-LWKSKRVFFVTPQVLEKDIQSGTCLTNYLVCLVI 237
Query: 262 DEADRML-DMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQ 320
DEA R L + + +R+++ + + L +AT + Q++ + + D LQI+ +
Sbjct: 238 DEAHRALGNYSYCVVVRELM-AVPIQLRILALTATPGSKTQAI--QGIIDNLQISTLEYR 294
Query: 321 LAANHNI 327
++H++
Sbjct: 295 NESDHDV 301
>At4g13880.1 68417.m02150 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains
Pfam:PF00560, INTERPRO:IPR001611; contains similarity
to Hcr2-0B [Lycopersicon esculentum]
gi|3894387|gb|AAC78593
Length = 725
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 65 LKPFKKDFYVPHLDVEKRPESDVEAWRSENE 95
L FK +FYV D + E E WR++ +
Sbjct: 42 LLEFKNEFYVQEFDPHMKCEKATETWRNKTD 72
>At3g27670.1 68416.m03455 expressed protein
Length = 1841
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 156 SGKTLSYILPAIVHINNQPK----SSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIH 211
+ K LS + +V ++N PK +S+GD P++ V + QQ+ D +TS
Sbjct: 376 ASKVLSIVENFLVTVSNAPKIEVHTSKGDSPLSRVGSVVFRFMQQLWHQNDYTPSTSSFL 435
Query: 212 NTCLFGGAPK 221
G+ K
Sbjct: 436 RVAYTNGSEK 445
>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
identical to AtMRP4 GI:2959767 from [Arabidopsis
thaliana]
Length = 1516
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 249 GRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQ 282
GR LKR L LDEA +D + I+KII +
Sbjct: 1422 GRVMLKRSRLLFLDEATASVDSQTDAVIQKIIRE 1455
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 28.3 bits (60), Expect = 9.0
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 298 REVQSLASEFLKDYLQINVGSLQLAANHNILQII----DVCMEYEKETKLSTLLKEIMAE 353
+EV+ L S L D +++ +G Q+ + IL++ D+ +E+E+ K + ++ AE
Sbjct: 937 QEVEDLRSA-LND-MKLQLGETQVTKSEEILKLQSALQDMQLEFEELAKELEMTNDLAAE 994
Query: 354 KENKTIIFIETKRRVDDITRK 374
E + +R++D+ K
Sbjct: 995 NEQLKDLVSSLQRKIDESDSK 1015
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 143 LSGHDMVGIASTGSGKTLSYILPAIV 168
++G D++ I + G GK+L Y LPA++
Sbjct: 102 MTGRDVLVIMAAGGGKSLCYQLPAML 127
>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
P-glycoprotein GI:4204793 from [Solanum tuberosum]
Length = 1227
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 250 RTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLM 291
R LK L+LDEA LD+ E +++ ++++ DR T++
Sbjct: 1133 RAVLKNPEILLLDEATSALDVESERVVQQALDRLMRDRTTVV 1174
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 249 GRTNLKRCTYLVLDEADRMLDMGFEPQIRKII 280
GR LK+ LVLDEA +D + I+KII
Sbjct: 1416 GRALLKQAKILVLDEATASVDTATDNLIQKII 1447
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.136 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,095,637
Number of Sequences: 28952
Number of extensions: 354826
Number of successful extensions: 1144
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 95
length of query: 379
length of database: 12,070,560
effective HSP length: 82
effective length of query: 297
effective length of database: 9,696,496
effective search space: 2879859312
effective search space used: 2879859312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -