Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001336-TA|BGIBMGA001336-PA|IPR014001|DEAD-like
helicases, N-terminal, IPR000629|ATP-dependent helicase, DEAD-box,
IPR014021|Helicase superfamily 1 and 2 ATP-binding, IPR014014|DEAD-box
RNA helicase Q motif, IPR013957|Protein of unknown function DUF1777,
IPR011545|DEAD/DEAH box helicase, N-terminal
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 446 e-126
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 264 1e-71
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 199 6e-52
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 195 1e-50
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 183 3e-47
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 156 6e-39
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 143 4e-35
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 133 4e-32
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 132 8e-32
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 128 1e-30
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 128 1e-30
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 122 6e-29
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 120 4e-28
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 117 3e-27
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 112 9e-26
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 110 3e-25
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 110 4e-25
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 107 3e-24
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 103 4e-23
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 99 9e-22
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 96 8e-21
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 86 9e-18
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 74 3e-14
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 48 3e-06
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 48 3e-06
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 38 0.002
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 34 0.038
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 33 0.050
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 30 0.62
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 29 1.1
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 27 3.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.3
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 7.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 446 bits (1098), Expect = e-126
Identities = 204/329 (62%), Positives = 257/329 (78%)
Query: 51 PGASLRKPKWDLSRLKPFKKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPTLTF 110
PGA+L K W L PF+KDFY H +V R +++V +R E EI + G N+PKP TF
Sbjct: 65 PGANLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTF 124
Query: 111 DEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHI 170
+EAGFP+YV+ E+ ++GF PTPIQ Q WP+A+SG DMVGI++TGSGKTLSY LPAIVHI
Sbjct: 125 EEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHI 184
Query: 171 NNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDA 230
N QP S GDGPI LVLAPTRELA QIQ+ C KF +S+I NTC++GG P+GPQ RDL
Sbjct: 185 NAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIR 244
Query: 231 GVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTL 290
GVEI IATPGRLLD L+S +TNL+R TYLVLDEADRMLDMGFEPQIRKI++QIRPDRQT+
Sbjct: 245 GVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTV 304
Query: 291 MWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEI 350
M+SATWP+EVQ LA ++L DY+Q+ VGSL LAA+HNI QI++V +K +L ++E+
Sbjct: 305 MFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEV 364
Query: 351 MAEKENKTIIFIETKRRVDDITRKMKRDG 379
+ +++NK +IF TKR DDITR +++DG
Sbjct: 365 LKDRDNKVLIFTGTKRVADDITRFLRQDG 393
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 264 bits (647), Expect = 1e-71
Identities = 134/317 (42%), Positives = 201/317 (63%), Gaps = 6/317 (1%)
Query: 68 FKKDFYVPHLDVEKRPESDVEAWRSENE-ITLKGRNIPKPTLTFDEAGFPDYVMDEIDKM 126
FKKDFYV +++ ++V+ R+ + I ++G + PKP ++ + G + I+ +
Sbjct: 377 FKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSL 436
Query: 127 GFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALV 186
G+ KPT IQAQ P SG D++G+A TGSGKT++++LP HI +Q G+GPIA++
Sbjct: 437 GYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAII 496
Query: 187 LAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFL 246
+ PTRELA QI C F I C +GGAP Q DL G EIV+ TPGR++D L
Sbjct: 497 MTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVL 556
Query: 247 --ESGR-TNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSL 303
+GR TNL RCTYLVLDEADRM D+GFEPQ+ +II IRPDRQT+++SAT+PR +++L
Sbjct: 557 SANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEAL 616
Query: 304 ASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEK-ENKTIIFI 362
A + LK ++I VG + A+ + QI++V E K ++L LL E+ + + +T++F+
Sbjct: 617 ARKVLKKPVEITVGGRSVVAS-EVEQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFV 675
Query: 363 ETKRRVDDITRKMKRDG 379
+ + D + + + G
Sbjct: 676 DRQESADALLSDLMKRG 692
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 199 bits (485), Expect = 6e-52
Identities = 115/281 (40%), Positives = 166/281 (59%), Gaps = 15/281 (5%)
Query: 106 PTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILP 165
P L FDE + + + + +PTPIQA WP L+G D+VGIA TGSGKT+++ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 166 AIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQA 225
A+ ++N S P LV++PTRELA Q E + + + ++GGAPK QA
Sbjct: 223 ALQYLNGL--SDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQA 280
Query: 226 RDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 285
R ++I TPGRLLD + G + + YLVLDEADRMLD GFE IR II P
Sbjct: 281 RAAK-NASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH-TP 338
Query: 286 D------RQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCME-YE 338
D RQT+ +SATWP V++LA+ FLKD ++I +GS +LAA+ NI QI+++ +
Sbjct: 339 DPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRS 398
Query: 339 KETKLSTLLKEIMAE--KENKTIIFIETKRRVDDITRKMKR 377
KE L LL++ ++ K++K +IF+ K+ + + R
Sbjct: 399 KERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLAR 439
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 195 bits (475), Expect = 1e-50
Identities = 116/294 (39%), Positives = 168/294 (57%), Gaps = 21/294 (7%)
Query: 96 ITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTG 155
+ + G +I +P F +++ I G+ +PTP+Q PI SG D++ A TG
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 156 SGKTLSYILPAI-VHINNQPKS-----SRGDG-------PIALVLAPTRELAQQIQEVCD 202
SGKT ++ P + + + P + G G P L+LAPTREL QI E
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 203 KFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLD 262
KF S + ++GGA Q R +D G +++ ATPGRL+D ++ GR +L +LVLD
Sbjct: 277 KFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLD 336
Query: 263 EADRMLDMGFEPQIRKIIEQIR----PDRQTLMWSATWPREVQSLASEFLKDYLQINVGS 318
EADRMLDMGFEPQIR I+E +RQTLM+SAT+PR++Q LA +FLKDY+ ++VG
Sbjct: 337 EADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGR 396
Query: 319 LQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKRRVDDIT 372
+ + + NI Q + + EK + L +L + E T+IF+ETKR D +T
Sbjct: 397 VG-STSENITQKVVHVEDSEKRSYLLDILHTL--PPEGLTLIFVETKRMADTLT 447
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 183 bits (446), Expect = 3e-47
Identities = 109/323 (33%), Positives = 173/323 (53%), Gaps = 24/323 (7%)
Query: 79 VEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQG 138
+E D + + I++KG ++P P ++EAG P ++ + K+ + +P+ IQ
Sbjct: 220 LEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAA 279
Query: 139 WPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGD---GPIALVLAPTRELAQ 195
P+ L D++GIA TGSGKT ++I+P I+ I+ P + + GP A+VLAPTRELAQ
Sbjct: 280 IPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQ 339
Query: 196 QIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKR 255
QIQ +KFA + GG Q+ + G IV+ATPGRLLD LE L +
Sbjct: 340 QIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQ 399
Query: 256 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPD-------------------RQTLMWSATW 296
CTY+V+DEADRMLDMGFE + KI+ + RQT+M+SAT
Sbjct: 400 CTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATL 459
Query: 297 PREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKEN 356
P V +LA +L + + + +G++ A + ++ + + +K ++ +L+
Sbjct: 460 PPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILES--NRFSP 517
Query: 357 KTIIFIETKRRVDDITRKMKRDG 379
IIF+ KR ++ I +++ G
Sbjct: 518 PIIIFVNLKRNIEAIAKQLNAIG 540
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 156 bits (378), Expect = 6e-39
Identities = 95/257 (36%), Positives = 142/257 (55%), Gaps = 10/257 (3%)
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
TF E G D + + +K+GF PTPIQ + P+ L+ D++G+A TGSGKT ++ LP I
Sbjct: 47 TFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ 106
Query: 169 HINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDL 228
+ N P A+VLAPTRELA QI E + + + + + GG QA L
Sbjct: 107 ELWNNPSPF-----FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVAL 161
Query: 229 DAGVEIVIATPGRLLDFLESGR-TNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 287
+++ TPGRL+D LE+ + +LK YL++DEADR+LDM F P I KI++ I +R
Sbjct: 162 SKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHER 221
Query: 288 QTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLL 347
+TL++SAT +V+ L L +++ V S + + ++Q K+T L L+
Sbjct: 222 RTLLFSATMTSKVEKLQRASLHQPVRVAVSS-KFSTVDTLIQRYLFFPFKHKDTYLVYLV 280
Query: 348 KEIMAEKENKTIIFIET 364
E+ N IIF T
Sbjct: 281 NELAG---NSIIIFART 294
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 143 bits (346), Expect = 4e-35
Identities = 84/259 (32%), Positives = 134/259 (51%), Gaps = 4/259 (1%)
Query: 93 ENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIA 152
E+ KG+ F G ++ I K GF PTPIQ + P+ L G D+VG+A
Sbjct: 54 ESNRRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMA 113
Query: 153 STGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHN 212
TGSGKT ++++P I H+ + +S AL+L+P RELA Q +V F+ + + +
Sbjct: 114 RTGSGKTAAFVIPMIEHLKSTLANSNTR---ALILSPNRELALQTVKVVKDFSKGTDLRS 170
Query: 213 TCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGF 272
+ GG Q L +IV+ATPGR L + L Y+V DEADR+ +MGF
Sbjct: 171 VAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGF 230
Query: 273 EPQIRKIIEQIRPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIID 332
Q+ +I+ + RQTL++SAT PR + A L+D + + + ++ + ++
Sbjct: 231 AAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRL-DVESKVSADLQSAFF 289
Query: 333 VCMEYEKETKLSTLLKEIM 351
E+E L +L++I+
Sbjct: 290 SVKTAEREAALLCILQDII 308
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 133 bits (321), Expect = 4e-32
Identities = 89/271 (32%), Positives = 138/271 (50%), Gaps = 9/271 (3%)
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
TFD+ ++ I GF +P+ IQ + L D++ A +G+GKT ++ + +
Sbjct: 20 TFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQ 79
Query: 169 HINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDL 228
I+ K + AL+LAPTRELAQQIQ+V + + GG L
Sbjct: 80 KIDTSLKQCQ-----ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAAL 134
Query: 229 DAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 288
AGV +V+ TPGR+ D ++ VLDEAD ML GF+ QI I + + P Q
Sbjct: 135 QAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQ 194
Query: 289 TLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLK 348
++ SAT P++V + ++F++D ++I V +L I Q V +E E E KL TL
Sbjct: 195 VVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTL-EGIKQFY-VAVEKE-EWKLDTLCD 251
Query: 349 EIMAEKENKTIIFIETKRRVDDITRKM-KRD 378
+ +IF T+R+VD +T ++ +RD
Sbjct: 252 LYETVTVTQAVIFCNTRRKVDWLTEQLTERD 282
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 132 bits (319), Expect = 8e-32
Identities = 79/257 (30%), Positives = 131/257 (50%), Gaps = 10/257 (3%)
Query: 123 IDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGP 182
I + GF +P+PIQ + PIALSG D++ A G+GKT ++++P++ ++ + +
Sbjct: 59 IFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ---- 114
Query: 183 IALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRL 242
L+L PTRELA Q +VC + GG L+ V IV+ TPGR+
Sbjct: 115 -TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRV 173
Query: 243 LDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQS 302
LD G + CT V+DEAD++L F P I +++ +RQ ++SAT+P V++
Sbjct: 174 LDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKN 233
Query: 303 LASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFI 362
+ L +IN+ + + Q E +K L+TL ++ N++IIF
Sbjct: 234 FMDKHLNKPYEINL--MDELTLRGVTQYYAFVDESQKVHCLNTLFSKLQI---NQSIIFC 288
Query: 363 ETKRRVDDITRKMKRDG 379
+ RV+ + +K+ G
Sbjct: 289 NSTNRVELLAKKITELG 305
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 128 bits (310), Expect = 1e-30
Identities = 84/250 (33%), Positives = 133/250 (53%), Gaps = 8/250 (3%)
Query: 119 VMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSR 178
++ + +GF PT IQ + P+AL G D+VG A TGSGKT ++I+P + + +PK +
Sbjct: 270 ILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPK--K 327
Query: 179 GDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIAT 238
L+L PTRELA Q V K A+ + I GG Q ++L +IVIAT
Sbjct: 328 VPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIAT 387
Query: 239 PGRLLDFLESGR-TNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 297
PGR +D + + + ++ +V+DEADRML+ GF ++ +II+ RQT+++SAT
Sbjct: 388 PGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMT 447
Query: 298 REVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYE--KETKLSTLLKEIMAEKE 355
+V L L +++ V + + A + + V + E + L L KE+
Sbjct: 448 DKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELF---H 504
Query: 356 NKTIIFIETK 365
+TIIF +K
Sbjct: 505 RRTIIFFRSK 514
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 128 bits (309), Expect = 1e-30
Identities = 97/290 (33%), Positives = 158/290 (54%), Gaps = 12/290 (4%)
Query: 84 ESDVEAWRSENEITLKGRNIP-KPTLTFDEAGFPDYVMDE-----IDKMGFAKPTPIQAQ 137
ES+ E +ENE +++ + T D F D + E I +MGF T IQ +
Sbjct: 59 ESESEELDNENEDERVQKSVNLNASSTSDIEKFSDLQLSENIQKAIKEMGFETMTEIQKR 118
Query: 138 GWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQI 197
P L+G D++G A TGSGKTL++++P I + R +G ++++PTRELA QI
Sbjct: 119 SIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPR-NGTGVIIISPTRELALQI 177
Query: 198 QEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNL-KRC 256
V + + GGA + +A L GV +++ATPGRLLD L++ + + +
Sbjct: 178 FGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNL 237
Query: 257 TYLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQTLMWSATWPREVQSLASEFLK-DYLQI 314
LV+DEADR+L++GFE ++R+I++ + +RQTL++SAT +V+ LA LK L +
Sbjct: 238 RSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLYV 297
Query: 315 NVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIET 364
NV S + + L+ V ++ +K L L + + K I+F+ +
Sbjct: 298 NVDSGKPTSTVEGLEQGYVVVDSDKRFLL--LFSFLKRNLKKKVIVFMSS 345
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 122 bits (295), Expect = 6e-29
Identities = 94/279 (33%), Positives = 138/279 (49%), Gaps = 20/279 (7%)
Query: 50 NPGASLRKPKWDLSRLKPFKKDFYVPHL---DVEKRPESDVEAWRSENEI-----TLKGR 101
NP RKP +L K + + +V L D + DV +N+I T +
Sbjct: 74 NPVFDPRKPAHELKGNK--RDNTFVTSLFTGDDSEHFSQDVGQNLEDNQISNIGTTKEAS 131
Query: 102 NIPKPTLTFDEAGFPDYVMDEID-KMGFAKPTPIQAQGWPIALSGHDMVGI--ASTGSGK 158
N P T F + D ++ KM + PT IQ+ P L+ D A TGSGK
Sbjct: 132 NAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGK 191
Query: 159 TLSYILPAIVHINNQPKS--SRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIH--NTC 214
TL+Y+LP + + PK+ +R G A+++APTREL QQI V +K N H +C
Sbjct: 192 TLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSC 251
Query: 215 -LFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRT-NLKRCTYLVLDEADRMLDMGF 272
+ GG K + + GV I+I TPGRL D LE+ ++ + ++VLDE DR++DMGF
Sbjct: 252 NVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGF 311
Query: 273 EPQIRKIIEQIRPDRQTLMWSATWP-REVQSLASEFLKD 310
E + KI+ + + + P R+V L S +KD
Sbjct: 312 EETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKD 350
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 120 bits (288), Expect = 4e-28
Identities = 77/268 (28%), Positives = 134/268 (50%), Gaps = 8/268 (2%)
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
+F+E + ++ I G+ P+ +Q++ G D++ A +G+GKT ++ + +
Sbjct: 22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQ 81
Query: 169 HINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDL 228
I+ + ++ AL+L+PTRELA QIQ V + + GG G + L
Sbjct: 82 SIDLSVRDTQ-----ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKL 136
Query: 229 DAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 288
D G +V TPGR+ D + + L+LDEAD +L+ GF+ QI I + P Q
Sbjct: 137 DYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQ 196
Query: 289 TLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLK 348
++ SAT P++V + ++F + ++I V +L L+ + +E E E K TL
Sbjct: 197 VVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEG--LKQYFIAVEKE-EWKFDTLCD 253
Query: 349 EIMAEKENKTIIFIETKRRVDDITRKMK 376
+ +IF ++R+VD +T KM+
Sbjct: 254 LYDTLTITQAVIFCNSRRKVDWLTEKMR 281
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 117 bits (281), Expect = 3e-27
Identities = 83/251 (33%), Positives = 129/251 (51%), Gaps = 5/251 (1%)
Query: 128 FAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVL 187
F T IQ Q P AL G D++G A TGSGKTL++I+P I ++ + +S DG ALV+
Sbjct: 59 FITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVI 117
Query: 188 APTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLE 247
+PTRELA Q E K + GG + L + I++ TPGRLL ++
Sbjct: 118 SPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHID 176
Query: 248 SG-RTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPREVQSLASE 306
+ L+LDEADR+LDMGF + I+ + RQT+++SAT + V+ LA
Sbjct: 177 QAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARL 236
Query: 307 FLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMAEKENKTIIFIETKR 366
L++ I+V ++ + L + + + KL L I + KTI+F+ + +
Sbjct: 237 SLQNPDFISVHENDTSSTPSNLNQFYLTVPLTE--KLDILFGFIRTHLKFKTIVFLSSCK 294
Query: 367 RVDDITRKMKR 377
+V + +R
Sbjct: 295 QVRFVYETFRR 305
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 112 bits (269), Expect = 9e-26
Identities = 84/265 (31%), Positives = 129/265 (48%), Gaps = 13/265 (4%)
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
TF + + I K F KPT +Q++ P+AL G D+V A TGSGKT +Y++P +
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 169 HINNQPKSSRGD-GPIALVLAPTRELAQQIQEVCDKF-ANTSK----IHNTCLFGGAPKG 222
+ Q + G AL+L PTRELAQQ+ V +K A SK I+ +
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQR 134
Query: 223 PQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQ 282
P DL +IVIATP R + + SG L + +LV+DEAD ML G+ ++ +
Sbjct: 135 PLLLDLP---DIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRS 191
Query: 283 IRPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETK 342
+ Q+ + SAT + + SL ++ + V + A+ + Q + C E +K
Sbjct: 192 LPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKE--ASGKLTQYVVKCSEQDKFLL 249
Query: 343 LSTLLKEIMAEKENKTIIFIETKRR 367
LLK + + K +IF+ R
Sbjct: 250 AYILLK--LRLIKGKILIFVNEINR 272
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 110 bits (265), Expect = 3e-25
Identities = 81/275 (29%), Positives = 142/275 (51%), Gaps = 17/275 (6%)
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSG--HDMVGIASTGSGKTLSYILPA 166
+F+E ++ I M F KP+ IQ + P+ LS +M+G + +G+GKT ++ L
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 167 IVHIN-NQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQA 225
+ ++ + PK P A+ LAP+RELA+QI +V + +++ FG P+
Sbjct: 175 LSRVDASVPK------PQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FGIKDSVPKG 226
Query: 226 RDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLD-MGFEPQIRKIIEQIR 284
+DA +IVI TPG ++D ++ + + + VLDEAD MLD G Q +I +
Sbjct: 227 AKIDA--QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP 284
Query: 285 PDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLS 344
+ Q +++SAT+ V+ A F + +I + + +L+ I Q+ C +E K +
Sbjct: 285 RNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSV-EGIKQLYMDCQ--SEEHKYN 341
Query: 345 TLLKEIMAEKENKTIIFIETKRRVDDITRKMKRDG 379
L++ ++IIF + K ++I R+M DG
Sbjct: 342 VLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADG 376
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 110 bits (264), Expect = 4e-25
Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 19/222 (8%)
Query: 108 LTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAI 167
++F ++ + + GF K TP+QA P+ L D+V A TGSGKTL+Y+LP
Sbjct: 1 MSFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCF 60
Query: 168 VHINNQPKSSRGDGPIALVLAPTRELAQQIQEVC--------DKFANTSKIHNTCLFGGA 219
+ + G G AL++APTRELA QI V D K+ GG
Sbjct: 61 DKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGG- 117
Query: 220 PKGPQARDL----DAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQ 275
KG DL + +VI TPGRL + L + K L+LDEAD ++DMGF+
Sbjct: 118 -KGTLTNDLASFREKNPSVVIGTPGRLNEML--SHISSKHLEILILDEADTLIDMGFQRT 174
Query: 276 IRKIIEQIRPDRQTLMWSATWPREVQS-LASEFLKDYLQINV 316
++ II Q+ R+T ++SAT V S L L++ ++++V
Sbjct: 175 LQSIISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSV 216
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 107 bits (257), Expect = 3e-24
Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 119 VMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSR 178
++ + K GF+KP PIQ+ P A G D++G A TGSGKTL++ +P + H +
Sbjct: 133 MLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKY 192
Query: 179 GDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDLDAGVEIVIAT 238
ALV+APTRELA QI + + + I + GG Q R L+ +V+AT
Sbjct: 193 VQ---ALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVAT 249
Query: 239 PGRLLDFL-ESGRT-NLKRCTYLVLDEADRMLDMGFEPQIRKIIE----QIRPDRQTLMW 292
PGRL + E+ T N K+ LVLDEADR+L ++ K++E + RQT ++
Sbjct: 250 PGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIF 309
Query: 293 SATWPREVQSLASEFLK 309
SAT+ +Q + +K
Sbjct: 310 SATFDEGLQQRLKKNMK 326
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 103 bits (247), Expect = 4e-23
Identities = 67/201 (33%), Positives = 99/201 (49%), Gaps = 11/201 (5%)
Query: 109 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
+F + G +++D + + +PT IQ L G + +G A TGSGKT ++ LP I
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 169 HINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQARDL 228
+ P G AL+L PTRELA QI E + + + GG Q+ DL
Sbjct: 68 KWSKDPS-----GIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDL 122
Query: 229 DAGVEIVIATPGRLLDFLESGR----TNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQI- 283
+V+ATPGRL D + S L+R +LV+DEADR+L F + +
Sbjct: 123 SKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLP 182
Query: 284 -RPDRQTLMWSATWPREVQSL 303
DRQTL+++AT ++ L
Sbjct: 183 ASEDRQTLLFTATVTDAIRQL 203
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 99.1 bits (236), Expect = 9e-22
Identities = 79/272 (29%), Positives = 128/272 (47%), Gaps = 7/272 (2%)
Query: 105 KPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALSGHDMVGI-ASTGSGKTLSYI 163
+PTL + A + + + GF K TP+Q + + + A TG+GKTL+++
Sbjct: 35 QPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFL 94
Query: 164 LPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGP 223
L A + +++L+PTRELA QI E K + I + GG K
Sbjct: 95 LVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMR 154
Query: 224 QARDLDAG-VEIVIATPGRLLDFLESGRTNLKRCT-YLVLDEADRMLDMGFEPQIRKIIE 281
+ + G ++IATPGRL D L++ R T +LDEADR++DMGF I I E
Sbjct: 155 EENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHE 214
Query: 282 QIRPDR-QTLMWSATWPREVQSLASEFL-KDYLQINVGSLQLAANHNILQ--IIDVCMEY 337
+ + + L +SAT P +V ++ L D+ IN H + +I+ ++
Sbjct: 215 AVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDK 274
Query: 338 EKETKLSTLLKEIMAEKENKTIIFIETKRRVD 369
+ LS L + + ++ I+F+ T VD
Sbjct: 275 VFSSSLSLLQQLTSSNPSSRIIVFLPTISMVD 306
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 95.9 bits (228), Expect = 8e-21
Identities = 75/274 (27%), Positives = 133/274 (48%), Gaps = 20/274 (7%)
Query: 114 GFPDYVMDE-----IDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIV 168
GF D+++ I GF P+ +Q P ++ G D++ A +G GKT ++L +
Sbjct: 52 GFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQ 111
Query: 169 HINNQPKSSRGDGPIA-LVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKGPQA-- 225
I +P DG ++ LVL TRELA QI+ +F+ T +F G Q
Sbjct: 112 QI--EPV----DGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDME 165
Query: 226 --RDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLD-MGFEPQIRKIIEQ 282
+D IV+ATPGRL + + + VLDE D++L+ + I+++
Sbjct: 166 AFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRA 225
Query: 283 IRPDRQTLMWSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETK 342
P +Q +M+SAT E++ + +F+++ L+I V H + Q E K K
Sbjct: 226 TPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRK 285
Query: 343 LSTLLKEIMAEKENKTIIFIETKRRVDDITRKMK 376
++ LL + + N+ +IF+++ R +++ R ++
Sbjct: 286 INDLLDSL---EFNQVVIFVKSVSRANELDRLLR 316
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 85.8 bits (203), Expect = 9e-18
Identities = 73/258 (28%), Positives = 127/258 (49%), Gaps = 14/258 (5%)
Query: 115 FPDYVMDE-IDKMGFAKPTPIQAQGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQ 173
FP+ ++ E + K + T IQ P S D++ A TGSGKT++Y+ P + +
Sbjct: 52 FPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLH 111
Query: 174 PKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPK-GPQARDLDAGV 232
G A+++APTREL +QI +K + + + L K +A L
Sbjct: 112 VPG----GYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKY 167
Query: 233 EIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR-QTLM 291
++ I TP RL+ +++G + ++ + V+DEADR+ + GF Q I+ +
Sbjct: 168 DMCIGTPMRLVQAIQTG-LSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSL 226
Query: 292 WSATWPREVQSLASEFLKDYLQINVGSLQLAANHNILQIIDVCMEYEKETKLSTLLKEIM 351
+SAT P V+ LA D ++I VG L+ AA +I Q + + +T +L++++
Sbjct: 227 FSATIPSRVEELAKVVTVDPIRIIVG-LKDAATDSIDQRL---LFVGSDTSKIVILRQMI 282
Query: 352 AEKENK--TIIFIETKRR 367
+ E K +IF++ R
Sbjct: 283 SNGELKPRVVIFVQDIER 300
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 74.1 bits (174), Expect = 3e-14
Identities = 48/196 (24%), Positives = 96/196 (48%), Gaps = 20/196 (10%)
Query: 104 PKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQAQGWPIALS----------GHDMVGIAS 153
P T+ F +++ + K + +QA P+ L G D+ A+
Sbjct: 122 PNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAA 181
Query: 154 TGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNT 213
TGSGKTLSY++P + ++++ +V+ PTREL Q+ + + + + + +
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR----CVVIVPTRELTVQVAKTFEYYMSGAGLQVC 237
Query: 214 CLFGGAPKGPQARDL-----DAGVEIVIATPGRLLDFLESGRT-NLKRCTYLVLDEADRM 267
G + L + ++++++TPGRL+D + + + +L+ Y+V+DEADR+
Sbjct: 238 AWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRL 297
Query: 268 LDMGFEPQIRKIIEQI 283
LD F+ + ++ +I
Sbjct: 298 LDQSFQDWVDTVMMEI 313
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 47.6 bits (108), Expect = 3e-06
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 13/239 (5%)
Query: 143 LSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCD 202
L+ +++ + TG GK+LS+++PA++ Q + + LVL P L Q + +
Sbjct: 1204 LNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPG-KVMNMVTLVLVPMMSLRQDMMLRVN 1262
Query: 203 KFANTSKIHNTCLFGGAPKGPQARDLDAGV---EIVIATPGRLLDFLESGRTNLKRCTYL 259
+ N F + + D + E + G L F ES T L R +
Sbjct: 1263 EKGLLVCSGNWTAFKDVRLTLETQLPDLFILTYESALTNSG--LRFFESLAT-LGRLARV 1319
Query: 260 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTL-MWSATWPREVQSLASE-FLKDYLQINVG 317
V+DEA +L G ++ L + SAT+PR+++ +A + F ++ +
Sbjct: 1320 VIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVARQTFCTNFYVLRET 1379
Query: 318 SLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMA-EKENKTIIFIETKRRVDDITRKM 375
S A NI + E L TL+K E + + IIF TK+ V+ I R++
Sbjct: 1380 S---TARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRL 1435
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 47.6 bits (108), Expect = 3e-06
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 13/239 (5%)
Query: 143 LSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCD 202
L+ +++ + TG GK+LS+++PA++ Q + + LVL P L Q + +
Sbjct: 1204 LNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPG-KVMNMVTLVLVPMMSLRQDMMLRVN 1262
Query: 203 KFANTSKIHNTCLFGGAPKGPQARDLDAGV---EIVIATPGRLLDFLESGRTNLKRCTYL 259
+ N F + + D + E + G L F ES T L R +
Sbjct: 1263 EKGLLVCSGNWTAFKDVRLTLETQLPDLFILTYESALTNSG--LRFFESLAT-LGRLARV 1319
Query: 260 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTL-MWSATWPREVQSLASE-FLKDYLQINVG 317
V+DEA +L G ++ L + SAT+PR+++ +A + F ++ +
Sbjct: 1320 VIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVARQTFCTNFYVLRET 1379
Query: 318 SLQLAANHNILQIIDVCMEYEKETKLSTLLKEIMA-EKENKTIIFIETKRRVDDITRKM 375
S A NI + E L TL+K E + + IIF TK+ V+ I R++
Sbjct: 1380 S---TARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRL 1435
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 37.9 bits (84), Expect = 0.002
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 154 TGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNT 213
TG GKT + + ++ PKS + +APT+ L Q E C K K
Sbjct: 95 TGLGKTFIAAVVMMNYLRWFPKS------YIVFMAPTKPLVTQQMEACYKITGIPKSQTA 148
Query: 214 CLFGGAPKGPQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADR 266
L G P + + + + TP +L+ ++ G + R + LV+DEA R
Sbjct: 149 ELSGHVPVTTRNQYYQSR-NVFFVTPQTILNDIKHGICDRTRISCLVIDEAHR 200
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 33.9 bits (74), Expect = 0.038
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 143 LSGHDMVGIASTGSGKTLSYILPAIVHINNQPKSSRGDGPIALVLAPTRELAQ 195
LSG D+ + TG GK+L Y LPA++ + +SRG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 33.5 bits (73), Expect = 0.050
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 163 ILPAIVHINNQPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSKIHNTCLFGGAPKG 222
I AI ++N +S G + L TR +++ + F K H G P G
Sbjct: 77 IRKAIAYVNKY--ASGCFGRVERRLVCTRSISRHSNQKLLDFCVECKKHKIKCVGNFPCG 134
Query: 223 PQARDLDAGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFE-PQIRKIIE 281
R L G+E VI TP RLL + NL+R +++ + M M + P + I
Sbjct: 135 ---RCLKKGLECVIETPPRLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIA 191
Query: 282 QIRPDRQT 289
++ QT
Sbjct: 192 ELSESLQT 199
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 29.9 bits (64), Expect = 0.62
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 60 WD--LSRLKPFKKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPT 107
WD LSR FK YVP+ DV S + W + + NIP P+
Sbjct: 505 WDYFLSRKDEFKNPNYVPYDDVIMPDPSSLRWWSASFAQPDENMNIPSPS 554
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 347 LKEIMAEKENKTIIFIETKRRVDDITRKMKR 377
LKE++ EKEN I+ E R+V+D ++ R
Sbjct: 990 LKELLEEKENALIMMEEEMRQVNDANTELLR 1020
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 27.5 bits (58), Expect = 3.3
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 161 SYILPAIVHINN-QPKSSRGDGPIALVLAPTRELAQQIQEVCDKFANTSK----IHNT 213
+Y A HI QPK + GD AL LAP+ A++ C++ + IHNT
Sbjct: 75 AYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLRECEQLVKRIRFQEAIHNT 132
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 3.3
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 13/86 (15%)
Query: 276 IRKIIEQIRPDRQTLMWSATWPREVQSLASEF--LKDYLQINVGSLQ----LAANHNILQ 329
+ K I ++R D++ L+ ++VQ+L++E L+++ GSL+ +A + L+
Sbjct: 1526 LEKEIHELRSDKEGLV------QQVQNLSAELAALREHSPTQ-GSLENADEIARLRSQLE 1578
Query: 330 IIDVCMEYEKETKLSTLLKEIMAEKE 355
E EKET++ E++AEKE
Sbjct: 1579 STKQYYEKEKETEILAARSELVAEKE 1604
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 88 EAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDK 125
E + N ++ N+ K ++T +A FP DEID+
Sbjct: 927 EVYEIPNVTIIENGNMFKESMTLSKAAFPLKPFDEIDR 964
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.136 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,682
Number of Sequences: 5004
Number of extensions: 66450
Number of successful extensions: 266
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 40
length of query: 379
length of database: 2,362,478
effective HSP length: 74
effective length of query: 305
effective length of database: 1,992,182
effective search space: 607615510
effective search space used: 607615510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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