Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001335-TA|BGIBMGA001335-PA|IPR001269|Dihydrouridine
synthase, DuS
(591 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ... 466 e-131
At3g49640.1 68416.m05425 nitrogen regulation family protein simi... 91 3e-18
At5g67220.1 68418.m08473 nitrogen regulation family protein simi... 87 4e-17
At5g27220.1 68418.m03247 protein transport protein-related low s... 39 0.008
At3g28770.1 68416.m03591 expressed protein 38 0.019
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 38 0.019
At3g63510.1 68416.m07154 nitrogen regulation family protein cont... 38 0.025
At1g56660.1 68414.m06516 expressed protein 34 0.30
At5g60030.1 68418.m07527 expressed protein 33 0.70
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 32 0.93
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 32 0.93
At5g62240.1 68418.m07815 expressed protein various predicted pro... 32 1.2
At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 31 1.6
At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 31 1.6
At1g13330.1 68414.m01547 expressed protein similar to nuclear re... 31 1.6
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 31 2.1
At5g64905.1 68418.m08164 expressed protein 30 3.8
At5g48610.1 68418.m06012 expressed protein ; expression supporte... 30 3.8
At5g08630.1 68418.m01026 DDT domain-containing protein low simil... 30 3.8
At1g45545.1 68414.m05199 hypothetical protein contains Pfam prof... 30 3.8
At1g16810.1 68414.m02019 expressed protein 30 3.8
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 30 5.0
At4g30150.1 68417.m04287 expressed protein 30 5.0
At3g12190.1 68416.m01520 hypothetical protein 30 5.0
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family... 30 5.0
At5g51920.1 68418.m06441 expressed protein ; expression supporte... 29 6.6
At5g48850.1 68418.m06043 male sterility MS5 family protein simil... 29 6.6
At4g29930.1 68417.m04258 basic helix-loop-helix (bHLH) family pr... 29 6.6
At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil... 29 6.6
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 29 8.7
At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7) ident... 29 8.7
At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TO... 29 8.7
At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TO... 29 8.7
At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TO... 29 8.7
At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identic... 29 8.7
At4g16420.2 68417.m02485 transcriptional adaptor (ADA2b) identic... 29 8.7
At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identic... 29 8.7
At3g61210.1 68416.m06850 embryo-abundant protein-related similar... 29 8.7
At3g09100.2 68416.m01070 mRNA capping enzyme family protein simi... 29 8.7
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote... 29 8.7
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 29 8.7
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 29 8.7
>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
contains Pfam domain, PF01207: Dihydrouridine synthase
(Dus)
Length = 700
Score = 466 bits (1148), Expect = e-131
Identities = 203/382 (53%), Positives = 283/382 (74%), Gaps = 2/382 (0%)
Query: 212 TSADVGEDIKIGAVTDEDLIKLLPRERKT-IDWNNKLYLSPLTTVGNLPFRRICKEFGAD 270
+ A+V ++ I V + +KL PRE+K ID+ +KLYL+PLTTVGNLPFRR+CK GAD
Sbjct: 313 SKANVEDEDSIKIVETDSSLKLHPREKKKLIDFRDKLYLAPLTTVGNLPFRRLCKVLGAD 372
Query: 271 VTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFI 330
VTCGEMA+C +LL+G EWAL++RH +EDLFG QICG+ P +++V +L+ +DFI
Sbjct: 373 VTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGSYPDTVSRVVELIDRECTVDFI 432
Query: 331 DLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTI 390
D+N+GCPID++ K GS ++++ ++ V +S ++ P T+K+RT ++ K ++
Sbjct: 433 DINMGCPIDMVVNKSAGSALLNKPLRMKNIVEVSSSIVETPITIKVRTAFFEGKNRIDSL 492
Query: 391 VPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQ-AATPCPVYGNGDIFSYEDYVEM 449
+ + NWGA+ +T+HGRSR+ RY+KS+DW+YI C + A T V GNGD++SY D+ +
Sbjct: 493 IADIGNWGATAVTIHGRSRQQRYSKSADWDYIYQCTKNATTNLQVIGNGDVYSYLDWNKH 552
Query: 450 RKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQG 509
+ P + MI RGALIKPWIF EIKEQ+ WDI+S +R I+K + +GL+HWGSDT+G
Sbjct: 553 KSDCPELSSCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFVRFGLQHWGSDTKG 612
Query: 510 VESTRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTDWIKIS 569
VE+TR FLLEWLS+ +RY+PVGLL+ PQ+IN RPP+YFGRDDLETLM S + DW++IS
Sbjct: 613 VETTRHFLLEWLSYTFRYIPVGLLDVIPQQINWRPPSYFGRDDLETLMMSESAGDWVRIS 672
Query: 570 EMLLGPVPDGFQFLPKHKANSY 591
EMLLG VP+GF F PKHK+N+Y
Sbjct: 673 EMLLGKVPEGFTFAPKHKSNAY 694
Score = 48.4 bits (110), Expect = 1e-05
Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 87 CPTILDVESSEQLKICQYNN-CKFIHDSKQFLNSKPKDIGDQCHVYKVRGKCPRGIACRY 145
CP V +E + CQY + C+F HD + F K DI QC KC G++CR+
Sbjct: 109 CP---QVARTEDVDSCQYKDKCRFNHDIEAFKAQKADDIEGQCPFVASGMKCAYGLSCRF 165
Query: 146 GSDHITADGFNIVNREKFDQWKDDTKNTLQPSLQTQLQKKKYNFDLAEKLVKHL 199
H G N ++EK + N Q L K K F A+ +K L
Sbjct: 166 LGSHRDITG-NSDDKEKSEM------NFFNKETQRLLWKNKMTFTNADAKLKSL 212
>At3g49640.1 68416.m05425 nitrogen regulation family protein similar
to NITROGEN REGULATION PROTEIN NIFR3 (SP:Q08111)
[Rhodobacter capsulatus]; contains Pfam domain PF01207:
Dihydrouridine synthase (Dus)
Length = 519
Score = 90.6 bits (215), Expect = 3e-18
Identities = 75/295 (25%), Positives = 132/295 (44%), Gaps = 32/295 (10%)
Query: 236 RERKT-IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGE------MALCESLLKGLKQ 288
+++KT +D+ NKL L+P+ VG L FR + E+GAD+T GE + CE L
Sbjct: 211 KKKKTKMDYQNKLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASG 270
Query: 289 EWALVKRHETEDLFGA----------QICGNNPYIITKVAQLLQENTELDFIDLNIGCPI 338
V++ +F Q+ ++ K ++++ + ID+N+GCP
Sbjct: 271 TSEFVEKGTDNVVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVAT--IDINMGCPK 328
Query: 339 DLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWG 398
+ G G+ ++ + + + + L +P T K+R + + T + ++ G
Sbjct: 329 AFSIQGGMGAALLSKPELIHDILATLKRNLDVPVTCKIR--LLKSPADTVELARRIEKLG 386
Query: 399 ASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKG 458
+ VHGR R + W+ I AA PV NGD+ Y+D+ + K A
Sbjct: 387 VPALAVHGRKIADRPRDPAKWDEIADVV-AALSIPVIANGDVLEYDDFSRI-KTATGAAS 444
Query: 459 VMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVEST 513
VM+ RGA+ IF+ K + W+ ++ KKY + W +D + + T
Sbjct: 445 VMVARGAMWNASIFSP-KGKSHWE-------DVKKKYLRKSI-LWNNDVKSTKYT 490
>At5g67220.1 68418.m08473 nitrogen regulation family protein similar
to unknown protein (gb|AAF51525.1) ; contains Pfam
domain PF01207: Dihydrouridine synthase (Dus); similar
to (SP:P45672) NIFR3-like protein (SP:P45672)
[Azospirillum brasilense]
Length = 423
Score = 86.6 bits (205), Expect = 4e-17
Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 14/232 (6%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMA---LCESLLKGLKQEWALVKRHETEDLF 302
K ++P+ LPFR +C+++GA M + K QE+ K E LF
Sbjct: 89 KYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTCK--EDRPLF 146
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
Q C N+P + + A+ ++ D++D+N+GCP + + G+ +M LP +++ V
Sbjct: 147 -VQFCANDPDTLLEAAKRVEPYC--DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 203
Query: 363 CASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKS--SDWE 420
++ L++P + K+R ++ + + T + + G SL+ VHGR+R+ + K +DW
Sbjct: 204 KLAQNLNVPVSCKIR--IFPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWS 261
Query: 421 YIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
I+ + A PV NG++ ED K V+GV+ L P F
Sbjct: 262 AIKE-VKNAMRIPVLANGNVRCIEDVDNCIK-ETGVEGVLSAETLLENPAAF 311
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 39.1 bits (87), Expect = 0.008
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 8 VCAIKDEY--VLQKSNIIEE--KSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDS 63
+C++KD Y LQ I E+ KS+ E +K+ +S F E K K +TE + +
Sbjct: 513 LCSVKDTYRECLQNWEIKEKELKSFQEEVKKIQDSLKDFQSKEAELVKLKESLTEHEKEL 572
Query: 64 KTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSKQFLNSK 120
KK+ + KI K+ LD + EQLK + K + + + LN+K
Sbjct: 573 GLKKKQIHVRSEKIELKDKKLDAREERLD-KKDEQLKSAEQKLAKCVKEYE--LNAK 626
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 37.9 bits (84), Expect = 0.019
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 12 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQN 71
K ++ KS EE ++EK + S+ +D N + K +++ + ++D K KK +
Sbjct: 1102 KKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKENEE 1161
Query: 72 KSRPKIFKDGKESK 85
KS K + K K
Sbjct: 1162 KSETKEIESSKSQK 1175
Score = 37.1 bits (82), Expect = 0.033
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 18 QKSNIIEEKSYNLEKRKLDESSASFDDNNLEFK----KTKIEITEDKNDSKTKKRGQNKS 73
+ S + EE N EK++ E SAS + E++ KTK E ++K S+ KKR + S
Sbjct: 985 ENSKLKEENKDNKEKKE-SEDSASKNREKKEYEEKKSKTKEEAKKEKKKSQDKKREEKDS 1043
Query: 74 RP-KIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSKQFLNSK 120
K K+ +ES+ E +++ K + + K D K+ ++K
Sbjct: 1044 EERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNK 1091
Score = 34.7 bits (76), Expect = 0.17
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 20 SNIIEEKSYNLEKRKLDESSA--SFDDNNLEFKK-TKIEITEDKNDSKTKKRGQNKSRPK 76
S I++ K N + K E S +DNN+E K+ TK E+ KND ++K + K K
Sbjct: 644 SKIVDNKGGNADSNKEKEVHVGDSTNDNNMESKEDTKSEVEVKKNDGSSEKGEEGKENNK 703
Query: 77 IFKDGKE 83
+ K+
Sbjct: 704 DSMEDKK 710
Score = 32.3 bits (70), Expect = 0.93
Identities = 37/181 (20%), Positives = 76/181 (41%), Gaps = 5/181 (2%)
Query: 41 SFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLK 100
S DD ++E K K E E+K + R +NK + + KES+ ES +
Sbjct: 740 SKDDKSVEAKGKKKESKENKKTKTNENRVRNKEE-NVQGNKKESEKVEKGEKKESKDAKS 798
Query: 101 ICQYNNCKFIHDSKQFLNSKPKDIGDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNR 160
+ +N K S + + + G+ K K + + + +++ D N+ N+
Sbjct: 799 VETKDNKKL--SSTENRDEAKERSGEDNKEDKEESKDYQSVEAKEKNENGGVD-TNVGNK 855
Query: 161 EKFDQWKDDTKNTLQPSLQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSADVGEDI 220
E KDD ++ + + ++KK+ +K + R+ + + +++ GE +
Sbjct: 856 EDSKDLKDDRSVEVKANKEESMKKKREEVQRNDK-SSTKEVRDFANNMDIDVQKGSGESV 914
Query: 221 K 221
K
Sbjct: 915 K 915
Score = 30.7 bits (66), Expect = 2.8
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 18 QKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKI 77
+KS +E+S +L+ +K +E + ++ K K E ++ D+K+ K+ ++K K
Sbjct: 1046 RKSKKEKEESRDLKAKKKEEETKEKKESE-NHKSKKKEDKKEHEDNKSMKKEEDKKEKKK 1104
Query: 78 FKDGKESKPCPTILDVESSE 97
++ K K D+E E
Sbjct: 1105 HEESKSRKKEEDKKDMEKLE 1124
Score = 30.7 bits (66), Expect = 2.8
Identities = 16/74 (21%), Positives = 35/74 (47%)
Query: 12 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQN 71
KD+ ++ + E + L+K + D + + N + K+TK E + K+D K +
Sbjct: 1187 KDQQKKKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQKETKKEKNKPKDDKKNTTKQSG 1246
Query: 72 KSRPKIFKDGKESK 85
+ + + KE++
Sbjct: 1247 GKKESMESESKEAE 1260
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 37.9 bits (84), Expect = 0.019
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 4 SNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDD-NNLEFKKTKIEITEDKND 62
SN K++ S ++E + + ++ SAS DD +N E K K E+ ++K
Sbjct: 377 SNEQSAKAKEKLSESSSEVVENQQTTEDTTEVSADSASMDDRSNAEQPKEKEEVEKEKAK 436
Query: 63 SKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQL 99
K++G+ K K + KE LDV + E+L
Sbjct: 437 DTKKEKGKEKDSEKKMEHEKEKGKS---LDVANFERL 470
>At3g63510.1 68416.m07154 nitrogen regulation family protein
contains Pfam domain PF01207: Dihydrouridine synthase
(Dus); similar to (SP:P45672) NIFR3-like protein
(SP:P45672) [Azospirillum brasilense]
Length = 404
Score = 37.5 bits (83), Expect = 0.025
Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 17/235 (7%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGG-GSGMMHRLPALETSVRC 363
Q+ G+N + K A+L + D I+LN GCP + G G +M + + ++
Sbjct: 98 QLGGSNVENLAKAAKL-SDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSA 156
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHT--IVPKMSNWGASL-ITVHGRSR--------EAR 412
+ ++P TVK R GV + K+S + VH R + R
Sbjct: 157 IAANTNVPVTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISPADNR 216
Query: 413 YTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
+EY + NG I S K GVM+GR A PW
Sbjct: 217 RIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNAALKEG--AHGVMVGRAAYNNPWQT 274
Query: 473 NEIKEQKIWDISSK--DRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLY 525
+ ++ + S R ++L++Y YG G+ G + R + L+ +
Sbjct: 275 LGQVDTAVYGVPSSGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFH 329
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 33.9 bits (74), Expect = 0.30
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 2 KNSNAGVCAIKDEYVLQKSNIIEEKSYNLE-KRKLDESSASFDDNNLEFKKTKIEITEDK 60
K S G +K++ +K N +E + + + K + E+ +D+ E KK+K+E E +
Sbjct: 368 KKSEKGEKDVKEDK--KKENPLETEVMSRDIKLEEPEAEKKEEDDTEEKKKSKVEGGESE 425
Query: 61 NDSKTKKRGQNKSR------PKIFKDGKESKPCPTILDVESSE 97
K KK+ + K++ PK+ +D +E K + +E S+
Sbjct: 426 EGKKKKKKDKKKNKKKDTKEPKMTEDEEEKKDDSKDVKIEGSK 468
Score = 31.1 bits (67), Expect = 2.1
Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 10/230 (4%)
Query: 2 KNSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKN 61
KN A ++ +K + EE +K++ DES + +K + E ++
Sbjct: 149 KNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQKEESKSNE 208
Query: 62 DSKTKKRGQNKSRPKIFKDGKESKPCPTILDVE-----SSEQLKICQYNNCKFIHDSKQF 116
D K K + + + + K+ +E K D E S + K + +C K
Sbjct: 209 DKKVKGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKKNKKKEKDESCAEEKKKKPD 268
Query: 117 LNSKPKDIGDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNREKFDQWKDDTKNTLQP 176
K KD + K++GK +G + + +E D+ D + +
Sbjct: 269 KEKKEKDESTEKEDKKLKGKKGKGEKPEKEDEGKKTKEHDATEQEMDDEAADHKEGKKKK 328
Query: 177 SLQTQLQKKKYNFDLAEKLVKHLD-----TRNKSVDKNLNTSADVGEDIK 221
+ +K+ ++ EK K D T+ K K S +D+K
Sbjct: 329 NKDKAKKKETVIDEVCEKETKDKDDDEGETKQKKNKKKEKKSEKGEKDVK 378
Score = 29.9 bits (64), Expect = 5.0
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 23 IEEKSYNLEKRKLDESSASFDDNNLEFKKTK---IEITEDKNDSKTKKRGQNKSR 74
++ KS K K DE S+ + E KK K E+ EDK+D K KK G+ S+
Sbjct: 37 VKAKSIEKVKAKKDEESSGKSKKDKEKKKGKNVDSEVKEDKDDDK-KKDGKMVSK 90
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 32.7 bits (71), Expect = 0.70
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 12 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQN 71
K E +K+N E+ K KL++ S D + KK+K ED D K K +
Sbjct: 150 KKEKKKKKNNKDEDVVDEKVKEKLEDEQKSADRKERKKKKSKKNNDEDVVDEKEKLEDEQ 209
Query: 72 KSRPKIFKDGKESKPCPTILDVESSEQLK 100
KS K+ K++K ++D + E+L+
Sbjct: 210 KSAE--IKEKKKNKD-EDVVDEKEKEKLE 235
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/105 (20%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 11 IKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQ 70
+ DE V +K + E++K + + D ++ +K K ++ +++ + K+R +
Sbjct: 128 VVDEKVNEKLEAEQRSEERRERKKEKKKKKNNKDEDVVDEKVKEKLEDEQKSADRKERKK 187
Query: 71 NKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSKQ 115
KS+ +D + K + D + S ++K + N + + D K+
Sbjct: 188 KKSKKNNDEDVVDEK--EKLEDEQKSAEIKEKKKNKDEDVVDEKE 230
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 32.3 bits (70), Expect = 0.93
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 24 EEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKE 83
E++ Y LEKRK +E +F++ K K+ G NK + ++ D E
Sbjct: 655 EQRKYQLEKRKQEEELRRLKQEEEKFQRIK-------EQWKSSTPGSNKRKDRVEDDDGE 707
Query: 84 SKP 86
SKP
Sbjct: 708 SKP 710
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 32.3 bits (70), Expect = 0.93
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 24 EEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKE 83
E++ Y LEKRK +E +F++ K K+ G NK + ++ D E
Sbjct: 867 EQRKYQLEKRKQEEELRRLKQEEEKFQRIK-------EQWKSSTPGSNKRKDRVEDDDGE 919
Query: 84 SKP 86
SKP
Sbjct: 920 SKP 922
>At5g62240.1 68418.m07815 expressed protein various predicted
proteins, Arabidopsis thaliana; expression supported by
MPSS
Length = 366
Score = 31.9 bits (69), Expect = 1.2
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 49 FKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCK 108
+ +T ++++ K+ SKTK +RP +++KP LD+ S + L CQ + K
Sbjct: 108 YNQTVKDVSKKKSKSKTKTSNSTLTRPTASLLARQNKP----LDIYSVQLLTRCQRSLAK 163
Query: 109 FIHDSKQFLNSK 120
F + L SK
Sbjct: 164 FGENVAPVLVSK 175
>At2g14720.2 68415.m01657 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 31.5 bits (68), Expect = 1.6
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 18/112 (16%)
Query: 178 LQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNL-NTSADVG-------EDIKIGAVTDED 229
++ +++KKYN D AE ++K L ++ +DK + + AD+ +D ++G T D
Sbjct: 311 IRCPMKEKKYNKDCAESVIKSLGIDSRKIDKCMGDPDADLDNPVLKEEQDAQVGKGTRGD 370
Query: 230 LIKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCES 281
+ +LP T+ NN+ Y L L + +C F E A+C S
Sbjct: 371 -VTILP----TLVVNNRQYRGKLEKSAVL--KALCSGFEEST---EPAICLS 412
>At2g14720.1 68415.m01656 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 31.5 bits (68), Expect = 1.6
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 18/112 (16%)
Query: 178 LQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNL-NTSADVG-------EDIKIGAVTDED 229
++ +++KKYN D AE ++K L ++ +DK + + AD+ +D ++G T D
Sbjct: 311 IRCPMKEKKYNKDCAESVIKSLGIDSRKIDKCMGDPDADLDNPVLKEEQDAQVGKGTRGD 370
Query: 230 LIKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCES 281
+ +LP T+ NN+ Y L L + +C F E A+C S
Sbjct: 371 -VTILP----TLVVNNRQYRGKLEKSAVL--KALCSGFEEST---EPAICLS 412
>At1g13330.1 68414.m01547 expressed protein similar to nuclear
receptor coactivator GT198 (GI:16506273) {Rattus
norvegicus}; similar to TBP-1 interacting protein
(GI:7328534) [Homo sapiens]
Length = 226
Score = 31.5 bits (68), Expect = 1.6
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 153 DGFNIVNREKFDQWKDDTKNTLQPSLQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNT 212
D F I N E+ Q K+D LQ QLQ+KK E +K L + N ++++
Sbjct: 71 DQFEIPNSEELAQMKEDNAK-----LQEQLQEKKKTISDVESEIKSLQS-NLTLEEIQEK 124
Query: 213 SADVGEDIKIGAVTDEDLIKL 233
A + +++K +E L+KL
Sbjct: 125 DAKLRKEVK---EMEEKLVKL 142
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 31.1 bits (67), Expect = 2.1
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 375 KMRTGVYQDKKITHTIVPKMSNWGASLITVH 405
K + G+Y+ KK T+ K +NWGAS+I++H
Sbjct: 157 KEKIGLYELKKGNLTV--KFTNWGASIISLH 185
>At5g64905.1 68418.m08164 expressed protein
Length = 96
Score = 30.3 bits (65), Expect = 3.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 38 SSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRP 75
SS S +D +++ K+ + E ED + K RG+NK++P
Sbjct: 48 SSHSEEDESIDIKEEEEEEEEDGMTIEIKARGKNKTKP 85
>At5g48610.1 68418.m06012 expressed protein ; expression supported
by MPSS
Length = 470
Score = 30.3 bits (65), Expect = 3.8
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 24 EEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRP 75
+EK + +K K + D + + +K + E + D K K++G+ K +P
Sbjct: 16 KEKKHKKDKEKREGKEKKSKDRSKDKQKERKEKKDKHKDQKDKEKGKEKGKP 67
>At5g08630.1 68418.m01026 DDT domain-containing protein low
similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
finger domain protein 1A (ATP-utilizing chromatin
assembly and remodeling factor 1) (ATP-dependent
chromatin remodelling protein) (Williams syndrome
transcription factor-related chromatin remodeling factor
180) {Homo sapiens}; contains Pfam profile PF02791: DDT
domain
Length = 723
Score = 30.3 bits (65), Expect = 3.8
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 10 AIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSK 64
A ++E + + I EEK + +E++ D+N LE KK ++ E DSK
Sbjct: 447 ARREEALAEARQIREEKE---RSKTGEEANGVLDNNRLEKKKNSAQVLESSEDSK 498
>At1g45545.1 68414.m05199 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 752
Score = 30.3 bits (65), Expect = 3.8
Identities = 17/80 (21%), Positives = 43/80 (53%)
Query: 6 AGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKT 65
A + A KD + +++N + + + +++L+E ++ + N E K KI + +++
Sbjct: 415 AEIAAYKDSNMGKRNNSDIQAAVDSARKELEEVISNIEKANSEVKTLKIIVGSLQSELAR 474
Query: 66 KKRGQNKSRPKIFKDGKESK 85
+K +++R + +D +E K
Sbjct: 475 EKHDLSETRQRNREDTREEK 494
>At1g16810.1 68414.m02019 expressed protein
Length = 144
Score = 30.3 bits (65), Expect = 3.8
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 207 DKNLNTSADVGEDIKIGAVTDEDLIKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKE 266
D+ +N S ED K+ D+D L P ER+ I+ +L + L N R ++
Sbjct: 66 DEEMNRSEKASEDAKLQQQLDDD-DHLTPAERRYIEQKQRLDVQKLAKEANKSHRNRIED 124
Query: 267 F 267
F
Sbjct: 125 F 125
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 29.9 bits (64), Expect = 5.0
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 12 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKND--SKTKKRG 69
KDE ++ +EK +++ ++ DE S DD+ + K+ + EDK + K+ KRG
Sbjct: 243 KDENEDKEEEKEDEKEESMDDKE-DEKEESNDDDKEDEKEESNDDKEDKKEDIKKSNKRG 301
Query: 70 QNKS 73
+ K+
Sbjct: 302 KGKT 305
>At4g30150.1 68417.m04287 expressed protein
Length = 2009
Score = 29.9 bits (64), Expect = 5.0
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 19 KSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIE---ITEDKNDSKTKKRGQNKSRP 75
K + K K+ S FDD+ +E +TK E T K + +KKR Q K
Sbjct: 3 KRKLTSPKKSKPSKKTKKNSKTQFDDSPVEVVETKAEELPRTGSKKSNPSKKRKQTKKNS 62
Query: 76 KI-FKDGK----ESKPC---PTILDVESSE 97
+ F+D E+K C T+ D+ E
Sbjct: 63 ETQFEDSSVEVVETKACDQEETVTDIVVEE 92
>At3g12190.1 68416.m01520 hypothetical protein
Length = 269
Score = 29.9 bits (64), Expect = 5.0
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 12 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKR 68
K++++ ++S+ +E K LEKR + ++A + E K+ K++ + + +S+ KKR
Sbjct: 61 KEKHLEKRSHELESKGKILEKRAREINTADGFRRDFEEKQRKLDRLKREIESEEKKR 117
>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
protein similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1309
Score = 29.9 bits (64), Expect = 5.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 50 KKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESK 85
KK KI ++K+ +T + K RPK+ ++GK K
Sbjct: 185 KKRKIARNDEKSQLETPTLKRKKIRPKVVREGKTKK 220
>At5g51920.1 68418.m06441 expressed protein ; expression supported
by MPSS
Length = 570
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 19 KSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIE--ITEDKNDSKTKKRG 69
+S + E + EKR ++A F L+ +K+ +T KN SKTKK+G
Sbjct: 220 ESEAVSEINRVSEKRGAKVAAAEFSWPRLKLCSSKLRKLVTAGKNGSKTKKKG 272
>At5g48850.1 68418.m06043 male sterility MS5 family protein similar
to male sterility MS5 [Arabidopsis thaliana] GI:3859112;
contains Pfam profile PF00515 TPR Domain
Length = 306
Score = 29.5 bits (63), Expect = 6.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 307 CGNNPYIITKVAQLLQENTELDFI 330
CG+ PY+ K AQL+++N E+ +
Sbjct: 35 CGDTPYVRAKHAQLIEKNPEMAIV 58
>At4g29930.1 68417.m04258 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 254
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 11 IKDEYVLQKSNIIEEKSYNLEKRKLDESSASFD----DNNLEFKKTKIEITEDKNDSKTK 66
IKD + I +EK+ E R+L+ S + D + F +T ++ D ND ++K
Sbjct: 89 IKDSIDYMQELIDQEKTLEAEIRELESRSTLLENPVRDYDCNFAETHLQDFSDNNDMRSK 148
Query: 67 K 67
K
Sbjct: 149 K 149
>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 522
Score = 29.5 bits (63), Expect = 6.6
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 12 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQN 71
++E V+ EK EKRK++ + + + KK+K E+ +D + K+ +
Sbjct: 457 EEEEVVAMEEDKSEKKKKKEKRKMETAEENEKSEKKKTKKSKAGGEEETDDGHSTKKKKK 516
Query: 72 KSR 74
KS+
Sbjct: 517 KSK 519
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 31 EKRKLDESSASFDDNNLEFKKTKIEITEDKNDS--KTKKRGQNKSRPKIFKDGKESK 85
EK K D+ D + K+ K ++ ++K D K K+R + + + K KD +ES+
Sbjct: 77 EKEKKDKEEKEKKDKERKEKEKKDKLEKEKKDKERKEKERKEKERKAKEKKDKEESE 133
>At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7)
identical to COP1-Interacting Protein 7 (CIP7)
GI:3327868 from [Arabidopsis thaliana]
Length = 1058
Score = 29.1 bits (62), Expect = 8.7
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 4 SNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKI---EITEDK 60
S A V K E ++ +EE +KR ++SS ++L KKT +
Sbjct: 750 SRAAVSKSKSEMEEERKKRMEELLIQRQKRIAEKSSGGSVSSSLASKKTPTVTKSVKSSI 809
Query: 61 NDSKTKKRGQNKSRP 75
+ KT + Q+K++P
Sbjct: 810 KNEKTPEAAQSKAKP 824
>At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 487
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 7 GVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTK 66
G C + ++ N EK N+E + S S D N + K+ + E++ DS+ +
Sbjct: 194 GDCQENINFSMENVNSSTEKD-NMEDHQDIGESKSVDTTNRKLDDDKVVVKEERGDSEKE 252
Query: 67 KRGQ 70
+ G+
Sbjct: 253 EEGE 256
>At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 7 GVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTK 66
G C + ++ N EK N+E + S S D N + K+ + E++ DS+ +
Sbjct: 194 GDCQENINFSMENVNSSTEKD-NMEDHQDIGESKSVDTTNRKLDDDKVVVKEERGDSEKE 252
Query: 67 KRGQ 70
+ G+
Sbjct: 253 EEGE 256
>At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 7 GVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTK 66
G C + ++ N EK N+E + S S D N + K+ + E++ DS+ +
Sbjct: 194 GDCQENINFSMENVNSSTEKD-NMEDHQDIGESKSVDTTNRKLDDDKVVVKEERGDSEKE 252
Query: 67 KRGQ 70
+ G+
Sbjct: 253 EEGE 256
>At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identical
to transcriptional adaptor ADA2b [Arabidopsis thaliana]
gi|13591700|gb|AAK31320
Length = 486
Score = 29.1 bits (62), Expect = 8.7
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 251 PLTTVGNLPFRRICKEFGADVTCGEMALCESL-LKGLKQEWALVKRH 296
P +GNL F IC ++ AD EM L E L + GL WA V H
Sbjct: 89 PYRVMGNLTFPLICPDWSAD---DEMLLLEGLEIYGL-GNWAEVAEH 131
>At4g16420.2 68417.m02485 transcriptional adaptor (ADA2b) identical
to transcriptional adaptor ADA2b [Arabidopsis thaliana]
gi|13591700|gb|AAK31320
Length = 483
Score = 29.1 bits (62), Expect = 8.7
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 251 PLTTVGNLPFRRICKEFGADVTCGEMALCESL-LKGLKQEWALVKRH 296
P +GNL F IC ++ AD EM L E L + GL WA V H
Sbjct: 89 PYRVMGNLTFPLICPDWSAD---DEMLLLEGLEIYGL-GNWAEVAEH 131
>At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identical
to transcriptional adaptor ADA2b [Arabidopsis thaliana]
gi|13591700|gb|AAK31320
Length = 487
Score = 29.1 bits (62), Expect = 8.7
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 251 PLTTVGNLPFRRICKEFGADVTCGEMALCESL-LKGLKQEWALVKRH 296
P +GNL F IC ++ AD EM L E L + GL WA V H
Sbjct: 89 PYRVMGNLTFPLICPDWSAD---DEMLLLEGLEIYGL-GNWAEVAEH 131
>At3g61210.1 68416.m06850 embryo-abundant protein-related similar to
embryo-abundant protein [Picea glauca] GI:1350531
Length = 261
Score = 29.1 bits (62), Expect = 8.7
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 446 YVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
Y ++++ P VK V+ +G +I W++N++
Sbjct: 115 YFDLKRFYPIVKRVLRKQGGIIVVWVYNDL 144
>At3g09100.2 68416.m01070 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF00782: Dual specificity phosphatase
catalytic domain
Length = 672
Score = 29.1 bits (62), Expect = 8.7
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 148 DHITADGFNIVNREKFDQWKDDTKNTLQPSLQTQLQKKKYNFDLAEKLVKHLD 200
D + +G ++V R +++WK K + P + + Y +DL V+ D
Sbjct: 449 DMVAINGQSVVERPFYERWKMLEKEVIDPRNHEKARSHIYRYDLEPFRVRRKD 501
>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 189
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 23 IEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPK 76
++ K N K+K +E D E KK K + +DK D K K + K K
Sbjct: 123 LQRKKENEAKKKEEEEKERKDMEKEEKKKDKEDKKKDKEDKKKAKVQKEKKEKK 176
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 18 QKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEI----TEDKNDSKTKKRGQNKS 73
QK N+I + N E+ + ++ E K++ ++ TE+K+ ++ ++ +
Sbjct: 1079 QKENVIAKAELNTEEDSFKKVEEIEKQDHGELKRSMVQAKRQETEEKDKTRAMEKNETVE 1138
Query: 74 RPKIFKDGKESK 85
R K KDG K
Sbjct: 1139 RRKQTKDGSLGK 1150
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 29.1 bits (62), Expect = 8.7
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 25 EKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKES 84
EK Y R+ D+ DD E KK + E+ E + + ++ G I + +E
Sbjct: 265 EKEYEQISRRTDDIKLELDDERREKKKLEEELME--LNKELEELGSESVEAAIVRLQEEV 322
Query: 85 KPCPTIL 91
K C IL
Sbjct: 323 KNCKNIL 329
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,196,465
Number of Sequences: 28952
Number of extensions: 700447
Number of successful extensions: 2137
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2048
Number of HSP's gapped (non-prelim): 97
length of query: 591
length of database: 12,070,560
effective HSP length: 85
effective length of query: 506
effective length of database: 9,609,640
effective search space: 4862477840
effective search space used: 4862477840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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