Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001335-TA|BGIBMGA001335-PA|IPR001269|Dihydrouridine
synthase, DuS
(591 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q17M24 Cluster: tRNA-dihydrouridine synthase; n=1; Aede... 643 0.0
UniRef50_Q7PVV7 Cluster: ENSANGP00000016833; n=2; Endopterygota|... 641 0.0
UniRef50_A7S213 Cluster: Predicted protein; n=1; Nematostella ve... 620 e-176
UniRef50_Q9VIS4 Cluster: CG10463-PA; n=3; Sophophora|Rep: CG1046... 606 e-172
UniRef50_Q96G46 Cluster: tRNA-dihydrouridine synthase 3-like; n=... 586 e-166
UniRef50_Q91XI1 Cluster: tRNA-dihydrouridine synthase 3-like; n=... 583 e-165
UniRef50_UPI000058804E Cluster: PREDICTED: similar to MGC53781 p... 549 e-155
UniRef50_Q6PEH0 Cluster: Zgc:63779; n=8; Chordata|Rep: Zgc:63779... 541 e-152
UniRef50_A4RQU5 Cluster: Predicted protein; n=2; Ostreococcus|Re... 489 e-137
UniRef50_UPI00015B6197 Cluster: PREDICTED: similar to CG10463-PA... 483 e-135
UniRef50_Q9TYN2 Cluster: Putative uncharacterized protein Y37E11... 455 e-126
UniRef50_Q01ML2 Cluster: H0613H07.1 protein; n=10; Eukaryota|Rep... 451 e-125
UniRef50_Q582L4 Cluster: TRNA-dihydrouridine synthase 3, putativ... 418 e-115
UniRef50_Q54CU9 Cluster: Putative uncharacterized protein; n=1; ... 415 e-114
UniRef50_Q010A0 Cluster: tRNA-dihydrouridine synthase; n=1; Ostr... 410 e-113
UniRef50_Q5KC68 Cluster: TRNA dihydrouridine synthase, putative;... 407 e-112
UniRef50_Q4QEF9 Cluster: Putative uncharacterized protein; n=3; ... 404 e-111
UniRef50_A3LUK5 Cluster: Dihydrouridine synthase of tRNA; n=6; S... 399 e-109
UniRef50_Q6C4K3 Cluster: Similar to DEHA0D12364g Debaryomyces ha... 392 e-107
UniRef50_A4S3Q5 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 386 e-105
UniRef50_Q5CRK5 Cluster: Ylr401cp-like protein with 2 CCCH domai... 342 2e-92
UniRef50_UPI0000499494 Cluster: conserved hypothetical protein; ... 332 2e-89
UniRef50_Q9UTH9 Cluster: tRNA dihydrouridine synthase Dus3; n=1;... 324 4e-87
UniRef50_Q2UL89 Cluster: Uncharacterized conserved protein; n=15... 308 4e-82
UniRef50_Q06053 Cluster: tRNA-dihydrouridine synthase 3; n=6; Sa... 245 2e-63
UniRef50_Q2HDP2 Cluster: Putative uncharacterized protein; n=1; ... 244 7e-63
UniRef50_Q7X346 Cluster: Putative uncharacterized protein; n=1; ... 200 8e-50
UniRef50_A4S604 Cluster: Predicted protein; n=1; Ostreococcus lu... 197 8e-49
UniRef50_Q7R3K2 Cluster: GLP_158_4738_3071; n=1; Giardia lamblia... 183 1e-44
UniRef50_A4XH30 Cluster: Putative TIM-barrel protein, nifR3 fami... 157 8e-37
UniRef50_Q899H0 Cluster: Nitrogen regulation protein nifR3; n=24... 144 8e-33
UniRef50_A5BP75 Cluster: Putative uncharacterized protein; n=1; ... 140 1e-31
UniRef50_A6LGT0 Cluster: Putative TIM-barrel enzyme; n=1; Paraba... 138 5e-31
UniRef50_Q7MXX6 Cluster: TIM-barrel protein, putative, NifR3 fam... 136 1e-30
UniRef50_Q1IVR5 Cluster: Dihydrouridine synthase TIM-barrel prot... 135 3e-30
UniRef50_Q0F181 Cluster: Dihydrouridine synthase TIM-barrel prot... 135 3e-30
UniRef50_Q64MI4 Cluster: Putative TIM-barrel enzyme; n=3; Bacter... 133 1e-29
UniRef50_Q9RDC6 Cluster: Putative uncharacterized protein SCO249... 132 3e-29
UniRef50_Q8GQD1 Cluster: NifR; n=5; Leptospira|Rep: NifR - Lepto... 132 3e-29
UniRef50_Q6F288 Cluster: TRNA dihydrouridine synthetase; n=3; Mo... 132 3e-29
UniRef50_A1IF01 Cluster: Dihydrouridine synthase family protein;... 130 1e-28
UniRef50_Q6AJZ5 Cluster: TRNA-dihydrouridine synthase; n=1; Desu... 129 2e-28
UniRef50_Q1Q3Q8 Cluster: Strongly similar to tRNA-dihydrouridine... 129 2e-28
UniRef50_Q8KB61 Cluster: TIM-barrel protein, nifR3 family; n=10;... 128 3e-28
UniRef50_Q6MRF1 Cluster: Transcription regulator homolog yacF; n... 128 3e-28
UniRef50_Q0YFW9 Cluster: Dihydrouridine synthase TIM-barrel prot... 128 3e-28
UniRef50_Q1NXZ7 Cluster: Dihydrouridine synthase TIM-barrel prot... 128 4e-28
UniRef50_Q2RZL4 Cluster: NifR3 family enzyme; n=1; Salinibacter ... 128 5e-28
UniRef50_Q2IG49 Cluster: Dihydrouridine synthase TIM-barrel prot... 128 5e-28
UniRef50_A6CBK4 Cluster: Predicted TIM-barrel enzyme, possibly d... 127 9e-28
UniRef50_Q9Z7D8 Cluster: Predicted oxidoreductase; n=7; Chlamydi... 126 2e-27
UniRef50_Q5M689 Cluster: Possible transcriptional regulator; n=2... 126 2e-27
UniRef50_Q74EF7 Cluster: Dihydrouridine synthase family protein;... 125 3e-27
UniRef50_A2FJB5 Cluster: TIM-barrel protein, nifR3 family protei... 125 3e-27
UniRef50_A5D5Q0 Cluster: TRNA-dihydrouridine synthase; n=5; Firm... 125 4e-27
UniRef50_O25427 Cluster: Probable tRNA-dihydrouridine synthase; ... 124 9e-27
UniRef50_Q1VN28 Cluster: Dihydrouridine synthase TIM-barrel prot... 123 2e-26
UniRef50_Q9ZED2 Cluster: Probable tRNA-dihydrouridine synthase; ... 123 2e-26
UniRef50_A6EDJ3 Cluster: Probable TIM-barrel protein, NifR3 fami... 122 3e-26
UniRef50_P37567 Cluster: Probable tRNA-dihydrouridine synthase 1... 122 4e-26
UniRef50_A4TZK1 Cluster: Dihydrouridine synthase, DuS; n=4; Prot... 121 6e-26
UniRef50_A4EC62 Cluster: Putative uncharacterized protein; n=1; ... 120 1e-25
UniRef50_O67533 Cluster: Probable tRNA-dihydrouridine synthase; ... 120 1e-25
UniRef50_Q8G7W8 Cluster: Possible NifR3-like protein; n=4; Bifid... 119 2e-25
UniRef50_A5EVV4 Cluster: Dihydrouridine synthase; n=1; Dicheloba... 117 8e-25
UniRef50_Q6A959 Cluster: TIM-barrel enzyme, NifR3 family; n=1; P... 116 2e-24
UniRef50_A4M5I1 Cluster: Dihydrouridine synthase, DuS; n=1; Petr... 115 3e-24
UniRef50_A6PPM6 Cluster: Dihydrouridine synthase, DuS; n=1; Vict... 115 4e-24
UniRef50_Q9CLW3 Cluster: tRNA-dihydrouridine synthase B; n=17; P... 115 4e-24
UniRef50_A0LJ96 Cluster: Putative TIM-barrel protein, nifR3 fami... 113 9e-24
UniRef50_Q2RM54 Cluster: Dihydrouridine synthase TIM-barrel prot... 113 1e-23
UniRef50_A6NW05 Cluster: Putative uncharacterized protein; n=1; ... 113 1e-23
UniRef50_Q3E0H8 Cluster: Dihydrouridine synthase TIM-barrel prot... 113 2e-23
UniRef50_Q0B0N8 Cluster: Putative TIM-barrel protein, NifR3 fami... 113 2e-23
UniRef50_Q489F6 Cluster: NifR3/Smm1 family protein; n=2; Proteob... 112 2e-23
UniRef50_A6BZR9 Cluster: Predicted TIM-barrel enzyme, possibly d... 112 2e-23
UniRef50_A6DCX2 Cluster: tRNA-dihydrouridine synthase B; n=1; Ca... 112 3e-23
UniRef50_Q8PX79 Cluster: NifR3-like protein; n=5; Archaea|Rep: N... 111 4e-23
UniRef50_Q6M9N8 Cluster: Putative uncharacterized protein; n=1; ... 111 5e-23
UniRef50_Q6SFW7 Cluster: NifR3/Smm1 family protein; n=1; uncultu... 111 5e-23
UniRef50_Q6MAU6 Cluster: Putative uncharacterized protein yohI; ... 109 3e-22
UniRef50_Q251N6 Cluster: Putative uncharacterized protein; n=2; ... 107 6e-22
UniRef50_Q31II6 Cluster: Dihydrouridine synthase; n=1; Thiomicro... 107 8e-22
UniRef50_A4YUQ6 Cluster: Putative tRNA-dihydrouridine synthase; ... 107 8e-22
UniRef50_Q0G7A4 Cluster: Nitrogen regulation protein nifr3; n=2;... 107 1e-21
UniRef50_A7HK00 Cluster: Dihydrouridine synthase DuS; n=4; Therm... 107 1e-21
UniRef50_O53835 Cluster: Probable tRNA-dihydrouridine synthase; ... 107 1e-21
UniRef50_Q0FAI7 Cluster: tRNA-dihydrouridine synthase, putative;... 106 1e-21
UniRef50_Q8YAB9 Cluster: Lmo0227 protein; n=55; Bacteria|Rep: Lm... 106 2e-21
UniRef50_Q14SX5 Cluster: Putative dihydrouridine synthase; n=1; ... 106 2e-21
UniRef50_Q9RRP8 Cluster: NifR3 protein; n=2; Deinococcus|Rep: Ni... 105 3e-21
UniRef50_Q3AZ67 Cluster: Dihydrouridine synthase TIM-barrel prot... 105 3e-21
UniRef50_Q5FTP7 Cluster: Nitrogen assimilation regulatory protei... 104 6e-21
UniRef50_Q2RTR9 Cluster: Dihydrouridine synthase TIM-barrel prot... 104 6e-21
UniRef50_Q55724 Cluster: Probable tRNA-dihydrouridine synthase 1... 104 6e-21
UniRef50_O83945 Cluster: Probable tRNA-dihydrouridine synthase; ... 104 8e-21
UniRef50_Q00XL7 Cluster: TRNA-dihydrouridine synthase; n=1; Ostr... 103 1e-20
UniRef50_Q090Q9 Cluster: TRNA-dihydrouridine synthase B; n=2; Cy... 102 2e-20
UniRef50_A7BE39 Cluster: Putative uncharacterized protein; n=1; ... 102 2e-20
UniRef50_Q607L4 Cluster: TIM-barrel protein, yjbN family; n=10; ... 102 3e-20
UniRef50_A7CWF1 Cluster: Putative TIM-barrel protein, nifR3 fami... 101 7e-20
UniRef50_Q5ZRM0 Cluster: Nitrogen regulation protein; n=4; Legio... 100 1e-19
UniRef50_A6DPY9 Cluster: Putative uncharacterized protein; n=1; ... 99 2e-19
UniRef50_Q8RFK3 Cluster: Nitrogen regulation protein NIFR3; n=3;... 99 3e-19
UniRef50_Q0C0N1 Cluster: Putative tRNA-dihydrouridine synthase; ... 99 3e-19
UniRef50_Q5CSA9 Cluster: Dus1p, tRNA dihydrouridine synthase; n=... 99 4e-19
UniRef50_Q08111 Cluster: Probable tRNA-dihydrouridine synthase; ... 98 5e-19
UniRef50_Q89LQ7 Cluster: Nitrogen regulation protein; n=22; Alph... 98 7e-19
UniRef50_Q9A7I4 Cluster: Nitrogen regulation protein Nifr3; n=2;... 97 9e-19
UniRef50_A7DPL5 Cluster: Putative TIM-barrel protein, nifR3 fami... 97 9e-19
UniRef50_A0EG06 Cluster: Chromosome undetermined scaffold_94, wh... 96 3e-18
UniRef50_Q8ZAX7 Cluster: tRNA-dihydrouridine synthase B; n=214; ... 95 6e-18
UniRef50_Q54ES7 Cluster: Putative uncharacterized protein; n=1; ... 92 3e-17
UniRef50_Q1QZQ6 Cluster: Dihydrouridine synthase, DuS; n=1; Chro... 92 4e-17
UniRef50_Q8SUV4 Cluster: Putative uncharacterized protein ECU07_... 92 4e-17
UniRef50_A4RVX6 Cluster: Predicted protein; n=2; Ostreococcus|Re... 91 8e-17
UniRef50_A3VNG3 Cluster: Dihydrouridine synthase TIM-barrel prot... 91 1e-16
UniRef50_A4S141 Cluster: Predicted protein; n=1; Ostreococcus lu... 91 1e-16
UniRef50_A5K1E0 Cluster: tRNA-dihydrouridine synthase, putative;... 89 2e-16
UniRef50_Q9JUP6 Cluster: tRNA-dihydrouridine synthase C; n=4; Ne... 89 3e-16
UniRef50_O52532 Cluster: tRNA-dihydrouridine synthase B; n=6; Ga... 89 3e-16
UniRef50_O74553 Cluster: tRNA dihydrouridine synthase Dus4; n=1;... 89 4e-16
UniRef50_Q6P1R4 Cluster: tRNA-dihydrouridine synthase 1-like; n=... 88 7e-16
UniRef50_Q7UXK8 Cluster: Putative uncharacterized protein; n=3; ... 87 2e-15
UniRef50_Q7UKE8 Cluster: Putative uncharacterized protein; n=2; ... 87 2e-15
UniRef50_Q30WR3 Cluster: Dihydrouridine synthase family protein;... 87 2e-15
UniRef50_Q9FH91 Cluster: Gb|AAF51525.1; n=6; Magnoliophyta|Rep: ... 87 2e-15
UniRef50_Q9VPM1 Cluster: CG3645-PA, isoform A; n=2; Diptera|Rep:... 86 2e-15
UniRef50_Q9HGN6 Cluster: tRNA dihydrouridine synthase Dus1; n=1;... 86 2e-15
UniRef50_A6DU09 Cluster: Dihydrouridine synthase family protein;... 86 3e-15
UniRef50_Q00RI1 Cluster: OSIGBa0125M19.5 protein; n=9; Magnoliop... 85 7e-15
UniRef50_Q5LRN6 Cluster: TRNA-dihydrouridine synthase, putative;... 84 9e-15
UniRef50_Q54XQ6 Cluster: Putative uncharacterized protein; n=1; ... 84 9e-15
UniRef50_Q8YMN5 Cluster: Transcriptional regulator; n=5; Bacteri... 84 1e-14
UniRef50_A3RPJ2 Cluster: TRNA-dihydrouridine synthase; n=2; Prot... 83 2e-14
UniRef50_Q4PG83 Cluster: Putative uncharacterized protein; n=1; ... 83 2e-14
UniRef50_Q4AHG7 Cluster: Dihydrouridine synthase, DuS; n=1; Chlo... 82 4e-14
UniRef50_UPI0000D5693C Cluster: PREDICTED: similar to dihydrouri... 82 5e-14
UniRef50_Q47C15 Cluster: Dihydrouridine synthase, DuS; n=2; Beta... 82 5e-14
UniRef50_Q5A4Y0 Cluster: Potential tRNA dihydrouridine synthase;... 81 6e-14
UniRef50_A6W1E8 Cluster: Dihydrouridine synthase DuS; n=1; Marin... 81 8e-14
UniRef50_A1VHK2 Cluster: Dihydrouridine synthase, DuS; n=4; Desu... 81 8e-14
UniRef50_Q5KP54 Cluster: TRNA dihydrouridine synthase, putative;... 81 1e-13
UniRef50_Q8XYX1 Cluster: tRNA-dihydrouridine synthase C; n=26; P... 81 1e-13
UniRef50_A1SX05 Cluster: Dihydrouridine synthase, DuS; n=3; Alte... 80 1e-13
UniRef50_O95620 Cluster: tRNA-dihydrouridine synthase 4-like; n=... 80 1e-13
UniRef50_Q9VY45 Cluster: CG1434-PA; n=6; Endopterygota|Rep: CG14... 80 2e-13
UniRef50_Q8A2H9 Cluster: Putative nifR3 family TIM-barrel enzyme... 79 2e-13
UniRef50_A7AQM0 Cluster: Dihydrouridine synthase, putative; n=1;... 79 2e-13
UniRef50_A3JG66 Cluster: Putative uncharacterized protein; n=3; ... 79 4e-13
UniRef50_Q9XVN8 Cluster: Putative uncharacterized protein; n=2; ... 79 4e-13
UniRef50_P53759 Cluster: tRNA-dihydrouridine synthase 1; n=11; S... 79 4e-13
UniRef50_A6GHV6 Cluster: Dihydrouridine synthase family protein;... 78 6e-13
UniRef50_Q884C6 Cluster: tRNA-dihydrouridine synthase C; n=8; Pr... 78 6e-13
UniRef50_Q7RX85 Cluster: Putative uncharacterized protein NCU000... 77 1e-12
UniRef50_Q06063 Cluster: tRNA-dihydrouridine synthase 4; n=10; S... 77 1e-12
UniRef50_Q6MNE9 Cluster: Nitrogen regulation protein nifR3; n=1;... 77 1e-12
UniRef50_A4E892 Cluster: Putative uncharacterized protein; n=1; ... 76 2e-12
UniRef50_Q6AKJ6 Cluster: Putative uncharacterized protein; n=1; ... 76 3e-12
UniRef50_Q9XWJ9 Cluster: Putative uncharacterized protein; n=2; ... 76 3e-12
UniRef50_Q1JWD3 Cluster: Dihydrouridine synthase, DuS; n=1; Desu... 75 4e-12
UniRef50_A6PMB8 Cluster: Dihydrouridine synthase, DuS; n=1; Vict... 75 4e-12
UniRef50_Q127F8 Cluster: Dihydrouridine synthase, DuS; n=3; Prot... 75 5e-12
UniRef50_UPI00015B403F Cluster: PREDICTED: similar to MGC79829 p... 75 7e-12
UniRef50_A7T8A1 Cluster: Predicted protein; n=1; Nematostella ve... 75 7e-12
UniRef50_Q5HJT5 Cluster: Probable tRNA-dihydrouridine synthase; ... 75 7e-12
UniRef50_Q9VJ06 Cluster: CG10495-PA; n=2; Sophophora|Rep: CG1049... 74 1e-11
UniRef50_Q6AJ40 Cluster: Putative uncharacterized protein; n=1; ... 73 2e-11
UniRef50_Q9NX74 Cluster: tRNA-dihydrouridine synthase 2-like; n=... 73 2e-11
UniRef50_A7AAN4 Cluster: Putative uncharacterized protein; n=2; ... 72 4e-11
UniRef50_Q73RG6 Cluster: Dihydrouridine synthase, putative; n=1;... 72 5e-11
UniRef50_Q4D174 Cluster: Dihydrouridine synthase (Dus), putative... 72 5e-11
UniRef50_A6VYA3 Cluster: TIM-barrel protein, yjbN family; n=8; P... 71 9e-11
UniRef50_Q5KPM6 Cluster: Putative uncharacterized protein; n=2; ... 71 9e-11
UniRef50_Q4WRF0 Cluster: Dihydrouridine synthase family protein,... 71 1e-10
UniRef50_UPI0000499E32 Cluster: conserved hypothetical protein; ... 70 2e-10
UniRef50_Q1N033 Cluster: Putative uncharacterized protein; n=1; ... 70 2e-10
UniRef50_Q0IFC6 Cluster: tRNA-dihydrouridine synthase; n=2; Culi... 70 2e-10
UniRef50_A6P2M8 Cluster: Putative uncharacterized protein; n=1; ... 70 2e-10
UniRef50_A4AAB0 Cluster: TRNA-dihydrouridine synthase C; n=2; un... 69 3e-10
UniRef50_O74731 Cluster: tRNA dihydrouridine synthase Dus2; n=1;... 69 4e-10
UniRef50_Q54QJ2 Cluster: Putative uncharacterized protein; n=1; ... 69 5e-10
UniRef50_Q4S086 Cluster: Chromosome undetermined SCAF14784, whol... 68 6e-10
UniRef50_Q21L63 Cluster: Dihydrouridine synthase, DuS; n=1; Sacc... 68 6e-10
UniRef50_A4BWB1 Cluster: Putative uncharacterized protein; n=5; ... 68 6e-10
UniRef50_Q7VKU5 Cluster: tRNA-dihydrouridine synthase C; n=118; ... 68 6e-10
UniRef50_UPI00015B40A4 Cluster: PREDICTED: similar to tRNA-dihyd... 68 8e-10
UniRef50_A2DYY3 Cluster: Putative uncharacterized protein; n=1; ... 68 8e-10
UniRef50_Q57V78 Cluster: TRNA-dihydrouridine synthase 1, putativ... 67 1e-09
UniRef50_O31546 Cluster: Probable tRNA-dihydrouridine synthase 2... 67 1e-09
UniRef50_UPI000023EA9A Cluster: hypothetical protein FG07217.1; ... 67 1e-09
UniRef50_Q6MNE4 Cluster: Dihydrouridine synthase family protein;... 67 1e-09
UniRef50_Q583Y8 Cluster: TRNA-dihydrouridine synthase 4, putativ... 67 1e-09
UniRef50_A2F0D1 Cluster: Putative uncharacterized protein; n=1; ... 66 3e-09
UniRef50_A1AT39 Cluster: Dihydrouridine synthase, DuS; n=7; Desu... 65 4e-09
UniRef50_Q09504 Cluster: Uncharacterized tRNA-dihydrouridine syn... 65 6e-09
UniRef50_A4BCJ5 Cluster: NifR3/Smm1 family protein; n=2; Gammapr... 64 8e-09
UniRef50_A2FU21 Cluster: Putative uncharacterized protein; n=1; ... 64 1e-08
UniRef50_Q22A31 Cluster: TIM-barrel protein, yjbN family; n=1; T... 63 2e-08
UniRef50_Q550J6 Cluster: Putative uncharacterized protein; n=2; ... 63 2e-08
UniRef50_Q5KGP0 Cluster: Putative uncharacterized protein; n=3; ... 62 3e-08
UniRef50_A7EMF2 Cluster: Putative uncharacterized protein; n=1; ... 62 4e-08
UniRef50_A2ACC0 Cluster: Novel protein; n=17; Eumetazoa|Rep: Nov... 61 7e-08
UniRef50_Q4UGK9 Cluster: Putative uncharacterized protein; n=2; ... 61 7e-08
UniRef50_Q4PAE4 Cluster: Putative uncharacterized protein; n=1; ... 61 7e-08
UniRef50_Q5SMC7 Cluster: TRNA-dihydrouridine synthase; n=2; Ther... 60 2e-07
UniRef50_Q83D40 Cluster: TIM-barrel protein, yjbN family; n=7; B... 60 2e-07
UniRef50_Q4FQ57 Cluster: Possible tRNA-dihydrouridine synthase; ... 59 3e-07
UniRef50_A4RU69 Cluster: Predicted protein; n=2; Ostreococcus|Re... 58 5e-07
UniRef50_Q3IKP0 Cluster: TRNA-dihydrouridine synthase C; n=5; Al... 58 9e-07
UniRef50_A5Z3X7 Cluster: Putative uncharacterized protein; n=1; ... 57 1e-06
UniRef50_Q4PBU9 Cluster: Putative uncharacterized protein; n=1; ... 56 2e-06
UniRef50_Q97DM0 Cluster: Predicted TIM-barrel enzyme, nifR3 fami... 56 3e-06
UniRef50_Q7R1J1 Cluster: GLP_38_15456_16676; n=1; Giardia lambli... 56 3e-06
UniRef50_A1IED4 Cluster: Putative uncharacterized protein; n=1; ... 56 4e-06
UniRef50_A0EAZ6 Cluster: Chromosome undetermined scaffold_87, wh... 56 4e-06
UniRef50_UPI0000DAE45A Cluster: hypothetical protein Rgryl_01000... 55 5e-06
UniRef50_Q4FLD8 Cluster: Putative uncharacterized protein; n=2; ... 55 5e-06
UniRef50_A2DHB4 Cluster: Putative uncharacterized protein; n=1; ... 55 5e-06
UniRef50_Q7R9R0 Cluster: Uncharacterized protein family UPF0034,... 54 8e-06
UniRef50_A5WG83 Cluster: TIM-barrel protein, yjbN family; n=4; M... 54 1e-05
UniRef50_Q04VP3 Cluster: TRNA-dihydrouridine synthase; n=4; Lept... 53 2e-05
UniRef50_Q4Q391 Cluster: Putative uncharacterized protein; n=3; ... 53 2e-05
UniRef50_Q9PGB5 Cluster: tRNA-dihydrouridine synthase A; n=8; Pr... 53 2e-05
UniRef50_A2EN54 Cluster: Putative uncharacterized protein; n=1; ... 53 2e-05
UniRef50_Q5ZVH8 Cluster: Zinc binding TIM barrel protein, YjbN f... 52 4e-05
UniRef50_A6GGZ7 Cluster: Putative uncharacterized protein; n=2; ... 52 4e-05
UniRef50_A1RNI1 Cluster: TIM-barrel protein, yjbN family; n=30; ... 52 6e-05
UniRef50_Q6BX60 Cluster: Debaryomyces hansenii chromosome B of s... 52 6e-05
UniRef50_A6RW05 Cluster: Putative uncharacterized protein; n=1; ... 52 6e-05
UniRef50_O51243 Cluster: Putative uncharacterized protein BB0225... 51 8e-05
UniRef50_Q0VPD7 Cluster: TIM-barrel protein, yjbN family; n=4; B... 51 8e-05
UniRef50_A7DKP5 Cluster: Dihydrouridine synthase, DuS; n=2; Meth... 51 1e-04
UniRef50_Q6C002 Cluster: Yarrowia lipolytica chromosome F of str... 51 1e-04
UniRef50_A2EF32 Cluster: Dihydrouridine synthase, putative; n=1;... 50 1e-04
UniRef50_A6RVN2 Cluster: Putative uncharacterized protein; n=2; ... 50 1e-04
UniRef50_A6U9Y2 Cluster: Dihydrouridine synthase DuS; n=2; Sinor... 50 2e-04
UniRef50_Q7R3H4 Cluster: GLP_158_49916_51304; n=1; Giardia lambl... 50 2e-04
UniRef50_A5GPV9 Cluster: TRNA-dihydrouridine synthase A; n=21; C... 49 3e-04
UniRef50_Q7UBC5 Cluster: tRNA-dihydrouridine synthase A; n=231; ... 49 3e-04
UniRef50_A7AWB5 Cluster: Dihydrouridine synthase (Dus) domain co... 47 0.001
UniRef50_A4SY29 Cluster: Dihydrouridine synthase, DuS; n=1; Poly... 46 0.002
UniRef50_A3AVU4 Cluster: Putative uncharacterized protein; n=1; ... 46 0.003
UniRef50_P96192 Cluster: tRNA-dihydrouridine synthase C; n=1; Az... 46 0.004
UniRef50_A1AW94 Cluster: TIM-barrel protein, yjbN family; n=1; C... 45 0.005
UniRef50_Q59YG4 Cluster: Potential tRNA dihydrouridine synthase;... 45 0.005
UniRef50_A2QES0 Cluster: Contig An02c0390, complete genome; n=12... 45 0.005
UniRef50_O51679 Cluster: Histidine phosphokinase/phophatase, put... 45 0.007
UniRef50_UPI000150A3F7 Cluster: hypothetical protein TTHERM_0014... 44 0.011
UniRef50_Q4PIC3 Cluster: Putative uncharacterized protein; n=1; ... 44 0.011
UniRef50_O32363 Cluster: NifR3-like protein; n=17; Campylobacter... 43 0.020
UniRef50_A5EXU5 Cluster: TRNA-dihydrouridine synthase A; n=1; Di... 43 0.020
UniRef50_UPI000023CFE7 Cluster: hypothetical protein FG01258.1; ... 43 0.026
UniRef50_Q8I3B2 Cluster: Putative uncharacterized protein PFI017... 42 0.046
UniRef50_Q2H6D9 Cluster: Putative uncharacterized protein; n=1; ... 42 0.046
UniRef50_Q5LQV9 Cluster: TRNA-dihydrouridine synthase A; n=46; B... 42 0.061
UniRef50_Q7R8B0 Cluster: Transcription factor iiib 70 kDa subuni... 42 0.061
UniRef50_Q4YRY8 Cluster: Putative uncharacterized protein; n=2; ... 42 0.061
UniRef50_Q8IB84 Cluster: Putative uncharacterized protein MAL8P1... 41 0.081
UniRef50_A5K2C4 Cluster: Phosphatidylcholine-sterol acyltransfer... 41 0.081
UniRef50_P53720 Cluster: tRNA-dihydrouridine synthase 2; n=7; Sa... 41 0.081
UniRef50_UPI0000E472BC Cluster: PREDICTED: similar to tRNA-dihyd... 41 0.11
UniRef50_Q755E8 Cluster: AFL125Wp; n=1; Eremothecium gossypii|Re... 41 0.11
UniRef50_Q1DPY5 Cluster: Putative uncharacterized protein; n=1; ... 41 0.11
UniRef50_A4S469 Cluster: Predicted protein; n=2; Ostreococcus|Re... 40 0.19
UniRef50_UPI00004991CC Cluster: hypothetical protein 205.t00005;... 40 0.25
UniRef50_Q5CYL0 Cluster: CDC68 like aminopeptidase family chroma... 40 0.25
UniRef50_Q24833 Cluster: Putative nitrogen fixation regulatory p... 40 0.25
UniRef50_A7EHJ6 Cluster: Putative uncharacterized protein; n=2; ... 40 0.25
UniRef50_O04650 Cluster: A_TM021B04.7 protein; n=2; Arabidopsis ... 39 0.33
UniRef50_Q7RI83 Cluster: CCAAT-box DNA binding protein subunit B... 39 0.33
UniRef50_A2FDS6 Cluster: Variable membrane protein, putative; n=... 39 0.33
UniRef50_A2EAT7 Cluster: Putative uncharacterized protein; n=1; ... 39 0.33
UniRef50_Q4A6U3 Cluster: Putative uncharacterized protein; n=2; ... 39 0.43
UniRef50_Q31C98 Cluster: Putative uncharacterized protein precur... 39 0.43
UniRef50_Q54J63 Cluster: C2H2 type Zn finger-containing protein;... 39 0.43
UniRef50_Q2LEB7 Cluster: Jacob 6; n=3; Entamoeba invadens|Rep: J... 39 0.43
UniRef50_UPI00006CCCD3 Cluster: hypothetical protein TTHERM_0033... 38 0.57
UniRef50_UPI0000586CAD Cluster: PREDICTED: similar to Dus1l prot... 38 0.75
UniRef50_UPI000049A33F Cluster: hypothetical protein 476.t00003;... 38 0.75
UniRef50_Q9LH98 Cluster: Arabidopsis thaliana genomic DNA, chrom... 38 0.75
UniRef50_Q23AJ7 Cluster: Cyclic nucleotide-binding domain contai... 38 0.75
UniRef50_UPI00006CCA52 Cluster: TPR Domain containing protein; n... 38 0.99
UniRef50_Q7RLZ5 Cluster: CCAAT-box DNA binding protein subunit B... 38 0.99
UniRef50_Q7RBU8 Cluster: Putative uncharacterized protein PY0603... 38 0.99
UniRef50_Q54PB2 Cluster: RNA-binding region-containing protein; ... 38 0.99
UniRef50_Q8STA9 Cluster: UPF0329 protein ECU05_1680/ECU11_0050; ... 38 0.99
UniRef50_UPI0001509D27 Cluster: PHD-finger family protein; n=1; ... 37 1.3
UniRef50_UPI00004D6F7D Cluster: formin-like 2; n=3; Euteleostomi... 37 1.3
UniRef50_Q185D8 Cluster: Putative uncharacterized protein; n=2; ... 37 1.3
UniRef50_Q8IB22 Cluster: Putative uncharacterized protein MAL8P1... 37 1.3
UniRef50_Q5CG46 Cluster: Uncharacterized protein family UPF0034;... 37 1.3
UniRef50_Q4YYI6 Cluster: Ubiquitin-like protein, putative; n=3; ... 37 1.3
UniRef50_A0DRF5 Cluster: Chromosome undetermined scaffold_60, wh... 37 1.3
UniRef50_A0CXA4 Cluster: Chromosome undetermined scaffold_30, wh... 37 1.3
UniRef50_UPI00015B4E97 Cluster: PREDICTED: similar to conserved ... 37 1.7
UniRef50_UPI0000E49283 Cluster: PREDICTED: hypothetical protein;... 37 1.7
UniRef50_UPI0000D57222 Cluster: PREDICTED: similar to Transcript... 37 1.7
UniRef50_Q9LW95 Cluster: KED; n=3; cellular organisms|Rep: KED -... 37 1.7
UniRef50_Q8IDG7 Cluster: Putative uncharacterized protein PF13_0... 37 1.7
UniRef50_Q7RFV6 Cluster: GAF domain protein-related; n=1; Plasmo... 37 1.7
UniRef50_Q7RDM0 Cluster: Putative HSP protein; n=9; Plasmodium|R... 37 1.7
UniRef50_Q7RCW6 Cluster: CCAAT-box DNA binding protein subunit B... 37 1.7
UniRef50_Q7RBF2 Cluster: Guanylyl cyclase; n=2; Plasmodium (Vinc... 37 1.7
UniRef50_Q54Y92 Cluster: Developmental protein; n=2; Dictyosteli... 37 1.7
UniRef50_Q4Y6I2 Cluster: Putative uncharacterized protein; n=4; ... 37 1.7
UniRef50_A2FK59 Cluster: Putative uncharacterized protein; n=1; ... 37 1.7
UniRef50_A2EQX6 Cluster: Putative uncharacterized protein; n=1; ... 37 1.7
UniRef50_A2DRG2 Cluster: Putative uncharacterized protein; n=1; ... 37 1.7
UniRef50_Q5AFB2 Cluster: Putative uncharacterized protein UBR1; ... 37 1.7
UniRef50_UPI0000DA2A7E Cluster: PREDICTED: hypothetical protein;... 36 2.3
UniRef50_UPI00006CFFAC Cluster: hypothetical protein TTHERM_0072... 36 2.3
UniRef50_UPI0000499FFB Cluster: hypothetical protein 144.t00010;... 36 2.3
UniRef50_Q74RB1 Cluster: Putative uncharacterized protein; n=17;... 36 2.3
UniRef50_Q8IKY2 Cluster: Transcription factor IIIb subunit, puta... 36 2.3
UniRef50_Q7RNH1 Cluster: Putative uncharacterized protein PY0184... 36 2.3
UniRef50_Q54KW8 Cluster: Putative uncharacterized protein; n=2; ... 36 2.3
UniRef50_Q4Z5M6 Cluster: Putative uncharacterized protein; n=1; ... 36 2.3
UniRef50_Q4YUL1 Cluster: Putative uncharacterized protein; n=1; ... 36 2.3
UniRef50_A7RJ77 Cluster: Predicted protein; n=1; Nematostella ve... 36 2.3
UniRef50_A2DSC7 Cluster: Zinc finger, C2H2 type family protein; ... 36 2.3
UniRef50_Q6C1L3 Cluster: Similar to DEHA0C12419g Debaryomyces ha... 36 2.3
UniRef50_UPI0000E4938D Cluster: PREDICTED: similar to DnaJ domai... 36 3.0
UniRef50_UPI0000D56108 Cluster: PREDICTED: similar to CG18304-PA... 36 3.0
UniRef50_Q8I3L3 Cluster: Putative uncharacterized protein PFE125... 36 3.0
UniRef50_Q8I311 Cluster: Putative uncharacterized protein PFI069... 36 3.0
UniRef50_Q7RAX9 Cluster: Putative uncharacterized protein PY0637... 36 3.0
UniRef50_Q24FF9 Cluster: Putative uncharacterized protein; n=2; ... 36 3.0
UniRef50_A3FQA8 Cluster: ORF 73, contains large complex repeat C... 36 3.0
UniRef50_A2EBQ3 Cluster: Retinitis pigmentosa GTPase regulator-l... 36 3.0
UniRef50_A2EAT9 Cluster: Putative uncharacterized protein; n=1; ... 36 3.0
UniRef50_A0DQB8 Cluster: Chromosome undetermined scaffold_6, who... 36 3.0
UniRef50_A6RVV6 Cluster: Predicted protein; n=1; Botryotinia fuc... 36 3.0
UniRef50_A6UP05 Cluster: Putative uncharacterized protein; n=1; ... 36 3.0
UniRef50_UPI0000DB76E7 Cluster: PREDICTED: similar to activating... 36 4.0
UniRef50_UPI00006CFCA0 Cluster: 50S ribosomal protein; n=1; Tetr... 36 4.0
UniRef50_UPI00006CFC2B Cluster: hypothetical protein TTHERM_0053... 36 4.0
UniRef50_UPI00006CAF0F Cluster: hypothetical protein TTHERM_0068... 36 4.0
UniRef50_Q9U380 Cluster: Putative uncharacterized protein; n=2; ... 36 4.0
UniRef50_Q8I4Y4 Cluster: Putative uncharacterized protein; n=4; ... 36 4.0
UniRef50_Q8I3X5 Cluster: Putative uncharacterized protein PFE065... 36 4.0
UniRef50_Q6LF09 Cluster: Putative uncharacterized protein; n=6; ... 36 4.0
UniRef50_Q5WRA3 Cluster: Multidrug resistance associated protein... 36 4.0
UniRef50_Q54IN6 Cluster: Putative uncharacterized protein; n=1; ... 36 4.0
UniRef50_Q23DY9 Cluster: Cation channel family protein; n=2; Alv... 36 4.0
UniRef50_Q22VV7 Cluster: CHY zinc finger family protein; n=1; Te... 36 4.0
UniRef50_A2EVM3 Cluster: Viral A-type inclusion protein, putativ... 36 4.0
UniRef50_A2DCZ8 Cluster: Putative uncharacterized protein; n=1; ... 36 4.0
UniRef50_A0DA99 Cluster: Chromosome undetermined scaffold_43, wh... 36 4.0
UniRef50_Q8X0W5 Cluster: Related to micromolar calcium activated... 36 4.0
UniRef50_Q06704 Cluster: Golgin IMH1; n=2; Saccharomyces cerevis... 36 4.0
UniRef50_UPI00015B62AB Cluster: PREDICTED: similar to CG18255-PA... 35 5.3
UniRef50_UPI00015B4683 Cluster: PREDICTED: similar to step ii sp... 35 5.3
UniRef50_UPI0000D5659A Cluster: PREDICTED: similar to CG31716-PA... 35 5.3
UniRef50_UPI00006D0E10 Cluster: hypothetical protein TTHERM_0007... 35 5.3
UniRef50_UPI0000587834 Cluster: PREDICTED: hypothetical protein;... 35 5.3
UniRef50_Q9CDR2 Cluster: Putative uncharacterized protein ywdA; ... 35 5.3
UniRef50_Q4FME1 Cluster: Para-aminobenzoate synthase component I... 35 5.3
UniRef50_A2BXV3 Cluster: Putative uncharacterized protein; n=1; ... 35 5.3
UniRef50_Q0JLT4 Cluster: Os01g0572100 protein; n=4; Oryza sativa... 35 5.3
UniRef50_Q01CM9 Cluster: CCCH-type Zn-finger protein; n=2; Ostre... 35 5.3
UniRef50_Q8ILI4 Cluster: Putative uncharacterized protein; n=1; ... 35 5.3
UniRef50_Q54J55 Cluster: Myb domain-containing protein; n=1; Dic... 35 5.3
UniRef50_Q54DW3 Cluster: Putative uncharacterized protein; n=1; ... 35 5.3
UniRef50_Q4Q669 Cluster: Dihydrouridine synthase (Dus), putative... 35 5.3
UniRef50_Q23K98 Cluster: Cation channel family protein; n=1; Tet... 35 5.3
UniRef50_Q23CY3 Cluster: Putative uncharacterized protein; n=1; ... 35 5.3
UniRef50_Q17IV5 Cluster: Chromodomain helicase DNA binding prote... 35 5.3
UniRef50_A2FNC4 Cluster: Variable membrane protein, putative; n=... 35 5.3
UniRef50_A2FK26 Cluster: Putative uncharacterized protein; n=1; ... 35 5.3
UniRef50_A2FJY0 Cluster: Putative uncharacterized protein; n=1; ... 35 5.3
UniRef50_A2DU96 Cluster: Putative uncharacterized protein; n=1; ... 35 5.3
UniRef50_Q6CS59 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 35 5.3
UniRef50_Q9UTK5 Cluster: Abnormal long morphology protein 1; n=1... 35 5.3
UniRef50_UPI00015B4A86 Cluster: PREDICTED: similar to conserved ... 35 7.0
UniRef50_UPI0000E490A6 Cluster: PREDICTED: hypothetical protein;... 35 7.0
UniRef50_UPI0000D56C7E Cluster: PREDICTED: similar to 39 kDa FK5... 35 7.0
UniRef50_UPI00006CB399 Cluster: DnaJ domain containing protein; ... 35 7.0
UniRef50_UPI000069F7BF Cluster: UPI000069F7BF related cluster; n... 35 7.0
UniRef50_Q4V8V0 Cluster: Zgc:114130; n=2; Danio rerio|Rep: Zgc:1... 35 7.0
UniRef50_Q4UL48 Cluster: Putative uncharacterized protein; n=6; ... 35 7.0
UniRef50_Q4HEJ9 Cluster: Alpha-2,3-sialyltransferase; n=1; Campy... 35 7.0
UniRef50_A6DTT4 Cluster: Putative ABC transporter ATP-binding pr... 35 7.0
UniRef50_Q8I5K9 Cluster: Putative uncharacterized protein; n=6; ... 35 7.0
UniRef50_Q8I1P2 Cluster: Putative uncharacterized protein PFD094... 35 7.0
UniRef50_Q86AP2 Cluster: Similar to Plasmodium falciparum. Splic... 35 7.0
UniRef50_Q7RGK0 Cluster: Putative uncharacterized protein PY0434... 35 7.0
UniRef50_Q54BM0 Cluster: Putative uncharacterized protein; n=1; ... 35 7.0
UniRef50_Q4XNR6 Cluster: Putative uncharacterized protein; n=1; ... 35 7.0
UniRef50_Q4XNC6 Cluster: Putative uncharacterized protein; n=3; ... 35 7.0
UniRef50_Q24DC4 Cluster: Transporter/monovalent cation:proton an... 35 7.0
UniRef50_Q23DS1 Cluster: GTP-binding protein, putative; n=2; Euk... 35 7.0
UniRef50_Q236Y1 Cluster: Nucleolar protein,Nop52 containing prot... 35 7.0
UniRef50_Q22TK4 Cluster: Putative uncharacterized protein; n=1; ... 35 7.0
UniRef50_A7RXM0 Cluster: Predicted protein; n=1; Nematostella ve... 35 7.0
UniRef50_A2FQ26 Cluster: Putative uncharacterized protein; n=1; ... 35 7.0
UniRef50_A2DGN0 Cluster: Viral A-type inclusion protein, putativ... 35 7.0
UniRef50_A0C765 Cluster: Chromosome undetermined scaffold_154, w... 35 7.0
UniRef50_A6RSH0 Cluster: Putative uncharacterized protein; n=2; ... 35 7.0
UniRef50_P26651 Cluster: Tristetraproline; n=15; Eutheria|Rep: T... 35 7.0
UniRef50_Q20085 Cluster: Membrane-associated tyrosine- and threo... 35 7.0
UniRef50_UPI0000E4A60A Cluster: PREDICTED: hypothetical protein;... 34 9.3
UniRef50_UPI0000DB7261 Cluster: PREDICTED: similar to CG18304-PA... 34 9.3
UniRef50_UPI00006CD8C0 Cluster: hypothetical protein TTHERM_0052... 34 9.3
UniRef50_UPI0000519A67 Cluster: PREDICTED: similar to Calcium-bi... 34 9.3
UniRef50_UPI000065D2BF Cluster: Homolog of Homo sapiens "HT017; ... 34 9.3
UniRef50_Q7UWL4 Cluster: Putative uncharacterized protein; n=1; ... 34 9.3
UniRef50_Q7P5Y3 Cluster: Chromosomal replication initiator prote... 34 9.3
UniRef50_Q4ZHU1 Cluster: Biofilm-associated protein; n=7; Staphy... 34 9.3
UniRef50_Q1FF30 Cluster: Putative uncharacterized protein; n=1; ... 34 9.3
UniRef50_Q119V0 Cluster: Peptidase M23B; n=1; Trichodesmium eryt... 34 9.3
UniRef50_A5MYZ5 Cluster: Putative uncharacterized protein; n=1; ... 34 9.3
UniRef50_Q00VG0 Cluster: Homology to unknown gene; n=1; Ostreoco... 34 9.3
UniRef50_Q8IEC5 Cluster: Putative uncharacterized protein PF13_0... 34 9.3
UniRef50_Q7RP00 Cluster: Arabidopsis thaliana MXI22.1-related; n... 34 9.3
UniRef50_Q7RNC6 Cluster: KED, putative; n=3; Plasmodium (Vinckei... 34 9.3
UniRef50_Q7R9A9 Cluster: Drosophila melanogaster CG15040 gene pr... 34 9.3
UniRef50_Q6LF58 Cluster: Putative uncharacterized protein; n=1; ... 34 9.3
UniRef50_Q616H4 Cluster: Putative uncharacterized protein CBG152... 34 9.3
UniRef50_Q55AJ7 Cluster: Putative uncharacterized protein; n=2; ... 34 9.3
UniRef50_Q4Z510 Cluster: Putative uncharacterized protein; n=1; ... 34 9.3
UniRef50_Q23WL4 Cluster: Putative uncharacterized protein; n=1; ... 34 9.3
UniRef50_Q23FP7 Cluster: Putative uncharacterized protein; n=1; ... 34 9.3
UniRef50_Q23DL3 Cluster: Putative uncharacterized protein; n=1; ... 34 9.3
UniRef50_Q23AJ8 Cluster: Cyclic nucleotide-binding domain contai... 34 9.3
UniRef50_Q233W7 Cluster: Putative uncharacterized protein; n=1; ... 34 9.3
UniRef50_Q228K2 Cluster: SNF2 family N-terminal domain containin... 34 9.3
UniRef50_Q1ZXA6 Cluster: DNA repair protein Rad4 family protein;... 34 9.3
UniRef50_Q16WE5 Cluster: Translation initiation factor if-2; n=1... 34 9.3
UniRef50_O96179 Cluster: Putative uncharacterized protein PFB042... 34 9.3
UniRef50_A2EVV5 Cluster: Putative uncharacterized protein; n=1; ... 34 9.3
UniRef50_A2E8X0 Cluster: Putative uncharacterized protein; n=1; ... 34 9.3
UniRef50_A2DC69 Cluster: Glutamic acid-rich protein, putative; n... 34 9.3
UniRef50_A2DAK5 Cluster: Putative uncharacterized protein; n=1; ... 34 9.3
UniRef50_A0E9E1 Cluster: Chromosome undetermined scaffold_84, wh... 34 9.3
UniRef50_A0CMI7 Cluster: Chromosome undetermined scaffold_21, wh... 34 9.3
UniRef50_A0BVF0 Cluster: Chromosome undetermined scaffold_13, wh... 34 9.3
UniRef50_Q0TYL7 Cluster: Putative uncharacterized protein; n=2; ... 34 9.3
UniRef50_A6RH89 Cluster: Predicted protein; n=2; Ajellomyces cap... 34 9.3
UniRef50_A3LZ88 Cluster: Myosin-1; n=1; Pichia stipitis|Rep: Myo... 34 9.3
UniRef50_Q12499 Cluster: Nucleolar protein NOP58; n=5; Eukaryota... 34 9.3
>UniRef50_Q17M24 Cluster: tRNA-dihydrouridine synthase; n=1; Aedes
aegypti|Rep: tRNA-dihydrouridine synthase - Aedes
aegypti (Yellowfever mosquito)
Length = 578
Score = 643 bits (1589), Expect = 0.0
Identities = 298/588 (50%), Positives = 408/588 (69%), Gaps = 18/588 (3%)
Query: 8 VCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKK 67
VC IK E+++ + ++E EK+ D + A+ DN E K + + D K K
Sbjct: 5 VCYIKPEFLVPR---VQE-----EKKPEDVTPAAKADNGTEEPPAK----KGRFDKKKKN 52
Query: 68 RGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSKQFLNSKPKDIGDQ 127
RGQNK+R FK+ +++ C T+LD + + + C C+F HD ++F+ KPKDIG+
Sbjct: 53 RGQNKNRDLPFKEQDDARLCKTLLDGKLNSEK--CSNPRCRFSHDLERFIQLKPKDIGES 110
Query: 128 CHVYKVRGKCPRGIACRYGSDHITADGFNIVNREKFDQWKDDTKNTLQPSLQTQLQKKKY 187
C++Y ++G C G+ CR+ H+ + N ++ + + L LQ QL+KK Y
Sbjct: 111 CYIYSLKGYCNFGVTCRFAGAHLDEESNNKISEGIKREDHNLVSMCLSFDLQNQLRKKSY 170
Query: 188 NFDLAEKLVKHLDTRNKSVDKNLN-TSADVGEDIKIGAVTDEDLIKLLPRERKTIDWNNK 246
N+ A K++ + K + ++ +D + IG+ TDEDL+KL ERK I++ +K
Sbjct: 171 NYSKANKIISKFERLQKESKEEVDGLGSDTLKAKPIGSCTDEDLVKLRSPERKKINFKDK 230
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQI 306
LYLSPLTTVGNLPFRRICKE+G D+TCGEMA ++ G+ QEWAL KRH +EDLFG QI
Sbjct: 231 LYLSPLTTVGNLPFRRICKEYGVDITCGEMACSVPIINGMMQEWALTKRHPSEDLFGVQI 290
Query: 307 CGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASK 366
CG+N +++ Q++ E+ ++DF+DLN+GCPIDLI+ +GGGS ++ R LE ++ S+
Sbjct: 291 CGHNQKLVSYATQVIAEHADVDFVDLNLGCPIDLIFNQGGGSALLRRRNILEVMIQSCSR 350
Query: 367 LLSI---PFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIE 423
+L+ FTVK R G+Y +K + H +VPK WGASL+T+HGR++E RYTK +DW+YI
Sbjct: 351 ILADYDKEFTVKTRMGIYANKYVAHELVPKFEEWGASLVTIHGRTKEQRYTKKADWDYIR 410
Query: 424 TCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDI 483
CAQ A P+YGNGDIF Y+DY++ ++ AP + GVM+GRGALIKPW+F EIKEQK D
Sbjct: 411 QCAQQAKSIPIYGNGDIFCYQDYLDAKERAPELAGVMVGRGALIKPWVFQEIKEQKNLDP 470
Query: 484 SSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPVGLLERPPQRINER 543
SS +R ++LK+Y NYGLEHWGSDT+GVE+TRRFLLEW SFLYRYVP GLLERPPQ+IN+R
Sbjct: 471 SSSERMDMLKRYVNYGLEHWGSDTKGVENTRRFLLEWQSFLYRYVPSGLLERPPQKINQR 530
Query: 544 PPTYFGRDDLETLMASSNCTDWIKISEMLLGPVPDGFQFLPKHKANSY 591
P + GRDDLETLMAS NC+DW+K+SEMLLGPVPD F F+PKHKANSY
Sbjct: 531 PEAFRGRDDLETLMASPNCSDWVKLSEMLLGPVPDSFNFVPKHKANSY 578
>UniRef50_Q7PVV7 Cluster: ENSANGP00000016833; n=2;
Endopterygota|Rep: ENSANGP00000016833 - Anopheles
gambiae str. PEST
Length = 594
Score = 641 bits (1583), Expect = 0.0
Identities = 315/603 (52%), Positives = 403/603 (66%), Gaps = 30/603 (4%)
Query: 7 GVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIE-ITEDKNDSKT 65
G+C IK E+++ + IE K+ E K+D++S + KK ++E E+ K
Sbjct: 4 GICHIKAEFLIPR---IEGKA---EDAKVDDTSEPPE------KKGRMEGNAEEPQGKKK 51
Query: 66 KKRGQNKSRPKIFKDGKESKPCPTILDVESSEQL-KICQYNNCKFIHDSKQFLNSKPKDI 124
K RGQNKSR FK+ + C ++LD E K C NC+F HD +FL KPKDI
Sbjct: 52 KNRGQNKSRTVPFKEEDGLRLCKSLLDGNLGEDAAKKCTNANCRFSHDLDKFLQLKPKDI 111
Query: 125 GDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNREKFDQWKDDTKNTLQPSLQTQLQK 184
C++Y +G C G+ CR+ H+ + NI + L LQ L+K
Sbjct: 112 DGTCYIYSTKGYCNFGVTCRFAGAHLDENRRNIYPEDFKPDTSMLVSTWLSTDLQHILRK 171
Query: 185 KKYNFDLAEKLVKHLDT-----RNKSVDKNLNTSADVGEDIK--------IGAVTDEDLI 231
+KYNF+ + K+V D +N+ N + + +D + GAVTDED+I
Sbjct: 172 RKYNFNKSTKIVNKFDRLQQEEKNEKAKSNEQENGEAKDDAEQKPEESKPAGAVTDEDVI 231
Query: 232 KLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWA 291
KL ERK I + +KLYLSPLTTVGNLPFRRICKE+G D+TCGEMA ++ G QEWA
Sbjct: 232 KLRSAERKRIVFRDKLYLSPLTTVGNLPFRRICKEYGVDITCGEMACAIPIINGAIQEWA 291
Query: 292 LVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMM 351
L KRH +EDLFG Q+CG+NP ++T AQ++ E ++DFIDLN GCPIDLI+ +GGGS ++
Sbjct: 292 LTKRHSSEDLFGVQLCGHNPKLVTYAAQIIAEKADVDFIDLNTGCPIDLIFNQGGGSALL 351
Query: 352 HRLPALETSVRCASKLLSI---PFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRS 408
R L+ V+ S+LL+ FTVK R G+Y +K I H +VPK +WGASLIT+HGR+
Sbjct: 352 RRQNVLKVMVQSCSRLLADYGKEFTVKTRIGIYNNKLIAHEMVPKFEDWGASLITIHGRT 411
Query: 409 REARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIK 468
+E RYTK +DWEY++ CA A PV+GNGDIF YEDY +R P + GVM+GRGALIK
Sbjct: 412 KEQRYTKRADWEYLQQCATQAQSVPVFGNGDIFGYEDYEHIRTKCPNIAGVMVGRGALIK 471
Query: 469 PWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYV 528
PW+F EIKE+K D SS +RFE+LK+Y NYGLEHWGSDT+GVE+TRRFLLEW SFLYRYV
Sbjct: 472 PWVFQEIKERKTLDPSSGERFEMLKRYVNYGLEHWGSDTKGVETTRRFLLEWQSFLYRYV 531
Query: 529 PVGLLERPPQRINERPPTYFGRDDLETLMASSNCTDWIKISEMLLGPVPDGFQFLPKHKA 588
P GLLERPPQRINERP Y GRDDLETLMAS NC DW+K+SEMLLGPVP+GF F+PKHKA
Sbjct: 532 PYGLLERPPQRINERPDAYRGRDDLETLMASPNCNDWVKLSEMLLGPVPEGFNFVPKHKA 591
Query: 589 NSY 591
N+Y
Sbjct: 592 NAY 594
>UniRef50_A7S213 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 570
Score = 620 bits (1531), Expect = e-176
Identities = 299/540 (55%), Positives = 379/540 (70%), Gaps = 17/540 (3%)
Query: 55 EITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSK 114
E T+ K K RG N+ RP+ + SK C E + C Y HD +
Sbjct: 40 EHTDGPPRKKKKNRGMNRQRPRDQRPDNSSKLCSFAARGEECTRGDSCFYG-----HDPQ 94
Query: 115 QFLNSKPKDIGDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNREKFDQWKDDTKNTL 174
+FL +K DIG +C + GKCP GI+CRY H TAD +I+N E F +K+DT N L
Sbjct: 95 KFLETKEPDIGKECVNFLKSGKCPYGISCRYWKHHTTADLKSIINEEFFSHYKEDTSNNL 154
Query: 175 QPSLQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSADVGEDIKIGAVTDEDLIKLL 234
+Q L+KKKY F + ++ L +N+NT V G VT+EDLIKL
Sbjct: 155 AKDVQISLRKKKYMFPRSNAYLELLSNA-----QNVNTQTGVVRTH--GCVTNEDLIKLR 207
Query: 235 PRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVK 294
+E+K ID+++KLYL+PLTT+GNLPFRRICK++GAD+TCGEMA+C +LL+G + EWALVK
Sbjct: 208 TQEKKRIDFSDKLYLAPLTTIGNLPFRRICKQYGADITCGEMAMCTNLLQGQQSEWALVK 267
Query: 295 RHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRL 354
RH +ED+FG Q+CG P +TK A+LLQ+ T++DFID+N GCPIDL++ KG GS +M R
Sbjct: 268 RHSSEDIFGVQLCGAFPDTMTKCAELLQKETDVDFIDINTGCPIDLVFNKGAGSALMERK 327
Query: 355 PALETSVRCASKLLSIPFTVKMRTGVYQDKKIT---HTIVPKMSNWGASLITVHGRSREA 411
L+ V+ ++ IP TVK+R G++ DKK T H +V + +WG ++T+HGRSRE
Sbjct: 328 GKLQQIVQGMKSVIDIPLTVKIRAGIH-DKKYTWNAHKLVGNLRDWGTDMVTIHGRSREQ 386
Query: 412 RYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWI 471
RYTKS+DW+YI A+ A+P PV+GNGDI S+ED ++ RK A V GVMI RGA+IKPWI
Sbjct: 387 RYTKSADWDYISEVAKLASPMPVFGNGDILSFEDAMQHRKQAG-VAGVMIARGAIIKPWI 445
Query: 472 FNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPVG 531
F EIKEQ+ WDISS +R +IL+++ N GLEHWGSDTQGVE TRRFLLEWLSF RYVPVG
Sbjct: 446 FTEIKEQRHWDISSSERLDILRQFVNAGLEHWGSDTQGVEKTRRFLLEWLSFTCRYVPVG 505
Query: 532 LLERPPQRINERPPTYFGRDDLETLMASSNCTDWIKISEMLLGPVPDGFQFLPKHKANSY 591
LLER PQRIN+RPP YFGR+DLETLMAS NC DW+KISEMLLGPVP F FLPKHKANSY
Sbjct: 506 LLERLPQRINDRPPAYFGRNDLETLMASPNCEDWVKISEMLLGPVPTTFAFLPKHKANSY 565
>UniRef50_Q9VIS4 Cluster: CG10463-PA; n=3; Sophophora|Rep:
CG10463-PA - Drosophila melanogaster (Fruit fly)
Length = 604
Score = 606 bits (1497), Expect = e-172
Identities = 301/617 (48%), Positives = 403/617 (65%), Gaps = 44/617 (7%)
Query: 5 NAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKN-DS 63
++G+C IK EY++ ++ + S D + +D ++E E K D
Sbjct: 2 DSGICYIKPEYLVTEA---DGGSAAANTENSDTNKRKREDGG------EVEAGEKKKWDK 52
Query: 64 KTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSKQFLNSKPKD 123
K +KRGQNK+RP +FKD + S C +++D E C NC+++HD +L +K +D
Sbjct: 53 KERKRGQNKNRP-VFKDERYSHLCHSLIDGTGGEP---CSLANCRYVHDLDAYLAAKGED 108
Query: 124 IGDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNREKFDQWKDDTK-NTLQPSLQTQL 182
+G +C+VY +G C RG++CR+ H G N+ RE +D+ T N + LQ +L
Sbjct: 109 LGPECYVYTTKGYCARGVSCRFAKAHTDEQGRNL-KREDYDENAPPTTCNGVSSELQVRL 167
Query: 183 QKKKYNFDLAEKLVKHL----DTRN--KSVDKNLNTSADVGE----------------DI 220
+K +Y+F +++L+K D R + +K N S + GE D
Sbjct: 168 RKHEYDFSRSKELIKMAEKLRDARKLKEQQEKEKNPSEETGEKQPSETTEILDAEKQTDT 227
Query: 221 K-----IGAVTDEDLIKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGE 275
K G D+ I + +D+ KL LSPLTT+GNLPFRRICKEFGAD+TCGE
Sbjct: 228 KSKPTATGCAIDDSAIGRDADHKPAVDFREKLVLSPLTTLGNLPFRRICKEFGADITCGE 287
Query: 276 MALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIG 335
MA + LLKG+ QEWAL KRH++ED+FG Q+CGNNP ++ + AQ++ E ++DFIDLNIG
Sbjct: 288 MACAQPLLKGMGQEWALTKRHQSEDVFGVQLCGNNPNMLNQAAQVIHETAQVDFIDLNIG 347
Query: 336 CPIDLIYKKGGGSGMMHRLPALETSVR-CASKLLSIPFTVKMRTGVYQDKKITHTIVPKM 394
CPIDLIY++GGGS +M R LE +VR CA+ +PFTVKMRTG+Y DK + H ++P +
Sbjct: 348 CPIDLIYQQGGGSALMRRTNILELTVRSCAALSDRLPFTVKMRTGIYADKSVAHELLPLV 407
Query: 395 SNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAP 454
WGAS +T+HGRSRE RYTK ++W YIE CA A PV GNGDI SYEDY+E R +AP
Sbjct: 408 EEWGASAVTLHGRSREQRYTKHANWAYIEECAAKAKCMPVIGNGDILSYEDYMERRTLAP 467
Query: 455 TVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTR 514
V VMIGRGALIKPWIF EIKE++ W SS R+E+L+K+ NYGLEHWGSDT+GVE+TR
Sbjct: 468 HVCSVMIGRGALIKPWIFQEIKEKQAWSPSSGQRYEMLQKFCNYGLEHWGSDTKGVETTR 527
Query: 515 RFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTDWIKISEMLLG 574
RFLLEW SFLYRY+P L PPQ+IN RP Y GRD++ETLM+S N DW+K+SE LLG
Sbjct: 528 RFLLEWQSFLYRYIPEALQTAPPQKINARPQKYRGRDEMETLMSSGNAADWVKLSESLLG 587
Query: 575 PVPDGFQFLPKHKANSY 591
VP+GF F+PKHKAN++
Sbjct: 588 RVPEGFTFVPKHKANAF 604
>UniRef50_Q96G46 Cluster: tRNA-dihydrouridine synthase 3-like; n=12;
Eutheria|Rep: tRNA-dihydrouridine synthase 3-like - Homo
sapiens (Human)
Length = 650
Score = 586 bits (1446), Expect = e-166
Identities = 282/567 (49%), Positives = 383/567 (67%), Gaps = 36/567 (6%)
Query: 55 EITEDKNDSKTKKR--GQNKSRPKIFKDGKE-SKPCPTILDVESSEQLKICQYNN-CKFI 110
E E +T+KR GQNK RP + + ++ CP+++ +++ C + + C+F+
Sbjct: 89 EAAEPGEQLQTQKRARGQNKGRPHVKPTNYDKNRLCPSLIQESAAK----CFFGDRCRFL 144
Query: 111 HDSKQFLNSKPKDIGDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNREKFDQWKD-- 168
HD ++L +KP D+G +C +++ G+CP G+ CR+ H+ +G N+V E +
Sbjct: 145 HDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAGAHLRPEGQNLVQEELAARGTQPP 204
Query: 169 DTKNTLQPSLQTQLQKKKYNFDLAEKLVKHLD------------TRNKSVDKNLN----- 211
+N L +LQ QL+K++ F+ AE+ ++ T + + N
Sbjct: 205 SIRNGLDKALQQQLRKREVRFERAEQALRRFSQGPTPAAAVPEGTAAEGAPRQENCGAQQ 264
Query: 212 ------TSADVGEDIKI-GAVTDEDLIKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRIC 264
TS ++ G +TDED+++L P E+K +D KLYL+PLTT GNLPFRRIC
Sbjct: 265 VPAGPGTSTPPSSPVRTCGPLTDEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRIC 324
Query: 265 KEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQEN 324
K FGADVTCGEMA+C +LL+G EWAL+KRH+ ED+FG Q+ G P +TK A+LL
Sbjct: 325 KRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRT 384
Query: 325 TELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDK 384
E+DF+D+N+GCPIDL+YKKGGG +M+R + VR +++L +P TVK+RTGV +
Sbjct: 385 VEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERV 444
Query: 385 KITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYE 444
+ H ++P++ +WG +L+T+HGRSRE RYTK +DW+YIE C QAA+P P++GNGDI S+E
Sbjct: 445 NLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQYIEECVQAASPMPLFGNGDILSFE 504
Query: 445 DYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWG 504
D R + V G+MI RGAL+KPW+F EIKEQ+ WDISS +R +IL+ ++NYGLEHWG
Sbjct: 505 D--ANRAMQTGVTGIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWG 562
Query: 505 SDTQGVESTRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTD 564
SDTQGVE TRRFLLEWLSFL RYVPVGLLER PQRINERPP Y GRD LETLMAS D
Sbjct: 563 SDTQGVEKTRRFLLEWLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAAD 622
Query: 565 WIKISEMLLGPVPDGFQFLPKHKANSY 591
WI+ISEMLLGPVP F FLPKHKAN+Y
Sbjct: 623 WIRISEMLLGPVPPSFAFLPKHKANAY 649
>UniRef50_Q91XI1 Cluster: tRNA-dihydrouridine synthase 3-like; n=7;
Euteleostomi|Rep: tRNA-dihydrouridine synthase 3-like -
Mus musculus (Mouse)
Length = 637
Score = 583 bits (1439), Expect = e-165
Identities = 285/575 (49%), Positives = 380/575 (66%), Gaps = 34/575 (5%)
Query: 44 DNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESKP--CPTILDVESSEQLKI 101
++ E KT++ I + + RGQNKSRP + K K CP+ L E
Sbjct: 69 EDGQENGKTEVAIESRERQVPKRARGQNKSRPHV-KPAHYDKDRLCPSFLQ----EPATP 123
Query: 102 CQYNN-CKFIHDSKQFLNSKPKDIGDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNR 160
C + + C+F+HD ++L +KP D+G +C +++ G+CP + CR+ H+ +G N+V
Sbjct: 124 CAFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPFSMTCRFAGAHLGPEGQNLVQE 183
Query: 161 EKFDQWKD--DTKNTLQPSLQTQLQKKKYNFDLAEKLVKHLDT----------------- 201
E + +N L +LQ QL+K++ F+ AE+ + L
Sbjct: 184 EVVARCAQLPSVRNGLDRALQQQLRKRQVCFERAEQALNRLTQSPMPTVVPETTVAMATP 243
Query: 202 RNKSVDKNLNTSADVGEDIK-----IGAVTDEDLIKLLPRERKTIDWNNKLYLSPLTTVG 256
+ S L+T G G +TDED+I+L P E+K +D + KLYL+PLTT G
Sbjct: 244 KQNSCHAQLDTVGGAGTPQSSPVPTCGPLTDEDVIRLRPCEKKRLDISGKLYLAPLTTCG 303
Query: 257 NLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITK 316
NLPFRRICK FGADVTCGEMA+C +LL+G EWAL+KRH ED+FG Q+ G P +TK
Sbjct: 304 NLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTK 363
Query: 317 VAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKM 376
A+LL ++DF+D+N+GCPIDL+YKKGGG +M+R + VR + +L +P TVKM
Sbjct: 364 CAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQIVRGVNGVLDVPLTVKM 423
Query: 377 RTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYG 436
RTGV + + H ++P++ +WG +L+T+HGRSRE RYT+ +DW YIE CA+ A+P P++G
Sbjct: 424 RTGVQERVSLAHRLLPELRDWGVALVTLHGRSREQRYTRLADWPYIEQCAKVASPMPLFG 483
Query: 437 NGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYS 496
NGDI S+ED + V G+M+ RGAL+KPW+F EIKEQ+ WDISS +R +IL+ ++
Sbjct: 484 NGDILSFED--ANCAMQTGVAGIMVARGALLKPWLFTEIKEQRHWDISSSERLDILRDFT 541
Query: 497 NYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETL 556
+YGLEHWGSDTQGVE TRRFLLEWLSFL RYVPVGLLERPPQRINERPP Y GRD LETL
Sbjct: 542 HYGLEHWGSDTQGVERTRRFLLEWLSFLCRYVPVGLLERPPQRINERPPYYLGRDYLETL 601
Query: 557 MASSNCTDWIKISEMLLGPVPDGFQFLPKHKANSY 591
MAS DWI+ISEMLLGPVP GF FLPKHKAN+Y
Sbjct: 602 MASQQAADWIRISEMLLGPVPPGFVFLPKHKANAY 636
>UniRef50_UPI000058804E Cluster: PREDICTED: similar to MGC53781
protein; n=3; Deuterostomia|Rep: PREDICTED: similar to
MGC53781 protein - Strongylocentrotus purpuratus
Length = 655
Score = 549 bits (1356), Expect = e-155
Identities = 283/573 (49%), Positives = 370/573 (64%), Gaps = 52/573 (9%)
Query: 64 KTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNN-CKFIHDSKQFLNSKPK 122
K K +GQNK R + E +PC L C++ + CKF HD ++ + K
Sbjct: 89 KQKGKGQNKKRYREKTVPSEERPCLDFLRGAG------CRFGDKCKFSHDIQKLMAGKAP 142
Query: 123 DIGDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNREKFDQW--KDDTKNTLQPSLQT 180
DI +C + G CP G+ CR+G HI + NIV+ EK + K +N L LQ
Sbjct: 143 DINPRCINFDKFGSCPYGMLCRFGGAHIDDNLKNIVDEEKVKETGGKCVVRNLLSKDLQI 202
Query: 181 QLQKKKYNFDLAEKLVKHLDTRNKSVD---------KNLNTSADV-----GEDIK-IGAV 225
QL+K+ +F +++ ++ LDTR K + K+ N S V G+ G V
Sbjct: 203 QLRKRNVHFKKSDQYMRTLDTRKKESNSKRPEGPGCKDHNESPTVVMPTSGDAHNHAGTV 262
Query: 226 TDEDLIKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKG 285
TD D+IKL P E+K +D +KL L+PLTTVGNLPFR +CK+ GAD+TCGEMA+C +LL+G
Sbjct: 263 TDADVIKLRPEEKKKLDVKDKLLLAPLTTVGNLPFRAVCKKLGADITCGEMAMCTNLLQG 322
Query: 286 LKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKG 345
EWAL++RH +ED+FG Q+CG P +T+ A+LL + ++DFID+N+GCPIDL+Y KG
Sbjct: 323 QSSEWALLRRHPSEDIFGVQLCGGFPDTMTRCAELLNDRLDIDFIDINVGCPIDLVYHKG 382
Query: 346 GGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVH 405
GSG+M+R+ + VR S +L IP TVKMRTGV+ D + H IV ++ +WGAS++TVH
Sbjct: 383 AGSGLMNRMGKFQEIVRGMSSVLDIPLTVKMRTGVHNDNPVAHKIVRRIYDWGASVVTVH 442
Query: 406 GRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGA 465
GR+RE RY+K +DW+Y++ C QAA P P GNGDI SYED R+ + G MI RGA
Sbjct: 443 GRTREQRYSKLADWDYLKDCVQAADPHPFIGNGDILSYEDSNFFREQSGAT-GQMIARGA 501
Query: 466 LIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLY 525
LIKPWIF EIKEQ+ WDISS +RF+IL+ Y N GL HWGSD++GV TRRFLLEWLSFL+
Sbjct: 502 LIKPWIFTEIKEQRHWDISSSERFDILQDYINLGLLHWGSDSEGVRKTRRFLLEWLSFLH 561
Query: 526 RYVPVGLLERPPQRINERPPTYFGRDDLETLMASSN------------------------ 561
RY+PVGLLE PQ+INERPP Y GRDDLETLMAS+N
Sbjct: 562 RYIPVGLLETLPQKINERPPYYVGRDDLETLMASANCADWVKIRPQLFVSHDNLENLMAS 621
Query: 562 --CTD-WIKISEMLLGPVPDGFQFLPKHKANSY 591
C + W+K+ EM LGPVPD FQFL KHKA+SY
Sbjct: 622 ANCAEKWVKLREMFLGPVPDDFQFLAKHKASSY 654
>UniRef50_Q6PEH0 Cluster: Zgc:63779; n=8; Chordata|Rep: Zgc:63779 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 660
Score = 541 bits (1334), Expect = e-152
Identities = 253/438 (57%), Positives = 322/438 (73%), Gaps = 10/438 (2%)
Query: 159 NREKFDQWKDDTKNTLQPSLQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSADVGE 218
+ E+ +Q + +KNT QTQ ++ N ++ K + + KN + SA+ E
Sbjct: 227 HEEQREQTDEQSKNTED---QTQTNNQRENANIQSKNTEDQRQSVEDPSKNGSDSANRRE 283
Query: 219 D----IK-IGAVTDEDLIKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTC 273
IK IG +TD D+IKL P E+K +D+ +KLYL+PLTT GNLPFRR+CK FGAD+TC
Sbjct: 284 TQVPPIKTIGPITDADIIKLRPCEKKQVDFRDKLYLAPLTTCGNLPFRRVCKRFGADITC 343
Query: 274 GEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLN 333
GEMA+C +LL+G EWAL+KRH +EDLFG Q+ G P +T+ A+LL +N ++DF+D+N
Sbjct: 344 GEMAMCTNLLQGQASEWALLKRHASEDLFGVQLEGCFPDTMTRCAELLNQNIDVDFVDIN 403
Query: 334 IGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPK 393
GCPIDL+YKKGGG G+M R E VR + +L +P TVK+RTGV Q+ I H ++P+
Sbjct: 404 SGCPIDLVYKKGGGCGLMTRTSKFEQIVRGMNSVLDVPLTVKIRTGVQQNSNIAHKLIPE 463
Query: 394 MSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIA 453
M WG SLIT+HGRSRE RYTK +DW+YI TCAQ A P P++GNGDI SYED ++ R+
Sbjct: 464 MKKWGVSLITLHGRSREQRYTKLADWDYINTCAQLAAPVPLFGNGDILSYEDAMKARETG 523
Query: 454 PTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVEST 513
V G+M+ RGALIKPW+F EIKE + WDISS +R +IL+ ++++GLEHWGSDTQGVE T
Sbjct: 524 --VSGIMVARGALIKPWLFTEIKESRHWDISSTERLDILRDFTHFGLEHWGSDTQGVEKT 581
Query: 514 RRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTDWIKISEMLL 573
R FLLEWLSFL RY+PVGLLER PQRINERPP Y GRD LETLMAS + DWI+ISEMLL
Sbjct: 582 RNFLLEWLSFLCRYIPVGLLERVPQRINERPPFYMGRDYLETLMASQHVDDWIQISEMLL 641
Query: 574 GPVPDGFQFLPKHKANSY 591
GPVP F FLPKHKAN+Y
Sbjct: 642 GPVPKNFSFLPKHKANAY 659
Score = 120 bits (290), Expect = 8e-26
Identities = 70/200 (35%), Positives = 105/200 (52%), Gaps = 14/200 (7%)
Query: 7 GVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEI---TEDKNDS 63
G AIK +++ K E S +K +E D E KK ++E T ++
Sbjct: 11 GAAAIKSQFLTSKEKFHEFLSSGRSSQKNEEDP---DGGEPEKKKIRLENEGETAEQEKK 67
Query: 64 KTKKRGQNKSRPKIFKDGKESKP-CPTILDVESSEQLKICQYNN-CKFIHDSKQFLNSKP 121
K K RGQNKSRP + E K C +I+ S +C Y C+F+HD ++L++K
Sbjct: 68 KIKMRGQNKSRPHVKPHTYEDKRLCTSIIQERDS----VCPYGEKCRFLHDVSEYLSTKA 123
Query: 122 KDIGDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNREKF--DQWKDDTKNTLQPSLQ 179
D+GDQCH++ GKCP G+ CRY H +AD N+VN E + +++T N L LQ
Sbjct: 124 ADLGDQCHLFNTLGKCPYGLTCRYAKAHTSADLKNMVNTELYRASAGRENTTNLLDKELQ 183
Query: 180 TQLQKKKYNFDLAEKLVKHL 199
+L+KK+ F A+ +K +
Sbjct: 184 KRLRKKQQRFPGADAFLKSI 203
>UniRef50_A4RQU5 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 608
Score = 489 bits (1206), Expect = e-137
Identities = 239/538 (44%), Positives = 336/538 (62%), Gaps = 18/538 (3%)
Query: 69 GQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSKQFLNSKPKDIGDQC 128
G R K + + KP L + + + K + CK+ HD FL +KP D+ C
Sbjct: 60 GAFNKRAKFAEKSRADKPRERGLCNQLTREGKCAFGDACKYSHDVDAFLKTKPPDLPGTC 119
Query: 129 HVYKVRGKCPRGIACRYGSDHITADGFNIVNREKFDQWKDDTK------NTLQPSLQTQL 182
G CP G+ CRY H T +G + + + K N + + +L
Sbjct: 120 TFVNKEGGCPYGVRCRYYGTHATGEGRDGATVAESTTTLEPPKTVEKEMNFVDKDVMVRL 179
Query: 183 QKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSADVGEDIKIGAVTDED------LIKLLPR 236
+KKKY+F A+ +VK + R K+ T A K V +E+ K
Sbjct: 180 RKKKYDFSRADTIVKEV-LRAMETKKDEQTKAGEESAAKRAKVDEENRTDTGAFTKARVE 238
Query: 237 ERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRH 296
E++TID+ +KLYL+PLTTVGNLPFRR+CK GAD+TCGEMALC SLL+GL EWAL++RH
Sbjct: 239 EKRTIDFKDKLYLAPLTTVGNLPFRRVCKTLGADITCGEMALCTSLLQGLPSEWALLRRH 298
Query: 297 ETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPA 356
++ED+FG QICG P +T+ QLL++ ++DFID+N+GCPID + +KG GS M+ +
Sbjct: 299 KSEDIFGVQICGGYPDSVTRCCQLLEDTIDVDFIDINMGCPIDSVCQKGYGSMMLEKPKK 358
Query: 357 LETSVRCASKLL-SIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTK 415
+ET +R AS L T K R ++ HT PK++ WGA+ +T+HGR+R RY
Sbjct: 359 METVIRAASAALGKCSLTFKTRMAYTDKSRVAHTFAPKVAEWGAAAMTLHGRTRAQRYRS 418
Query: 416 SSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
+DWEY + ++++ P+ GNGD++ +DY + +V M+ RGALIKPW+F EI
Sbjct: 419 VADWEYTKLTKESSS-VPLIGNGDVYMQKDYYTHLE-EHSVDTCMLARGALIKPWLFTEI 476
Query: 476 KEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPVGLLER 535
KE++ WDISS++RF+ILK ++++GLEHWGSDT+GVESTR++LLEW+SF YRY P+GLL+
Sbjct: 477 KERRDWDISSRERFDILKSFASFGLEHWGSDTRGVESTRKYLLEWMSFTYRYTPIGLLDH 536
Query: 536 P--PQRINERPPTYFGRDDLETLMASSNCTDWIKISEMLLGPVPDGFQFLPKHKANSY 591
+ +RPP + GRDDLETLMAS +DW+KIS MLLGP P+GF F PKHK+N+Y
Sbjct: 537 SYGAAAMTQRPPAFVGRDDLETLMASEASSDWVKISTMLLGPPPEGFAFQPKHKSNAY 594
>UniRef50_UPI00015B6197 Cluster: PREDICTED: similar to CG10463-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
CG10463-PA - Nasonia vitripennis
Length = 584
Score = 483 bits (1192), Expect = e-135
Identities = 246/494 (49%), Positives = 319/494 (64%), Gaps = 36/494 (7%)
Query: 6 AGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKT 65
+GVC +K EY+++ S E N K K E + + D + + K + E+K D
Sbjct: 23 SGVCLVKPEYIIEDSVRSNENGTN-GKGKDTEKTETDADAAEDGEPPKKKFKENKKD--- 78
Query: 66 KKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSKQFLNSKPKDIG 125
K RGQNK R FK +E CP I D+ E K C NNC FIHD ++L KP DIG
Sbjct: 79 KPRGQNKGRSVPFKTQREHNLCPWIADLTVEEVEKKCSNNNCHFIHDRAEYLKIKPDDIG 138
Query: 126 DQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNREKFDQWKD---DTKNTLQPSLQTQL 182
+C+V+++ GKCPRG ACR GS H T DGFNI+++EKF+ + TKN + L +L
Sbjct: 139 TECYVFELTGKCPRGAACRMGSKHTTPDGFNIIDKEKFEAYTKLPPSTKNQISRELSEKL 198
Query: 183 QK------------KKYNF---DLAEKLVKHLDTRNKSV----DKNLNTSADVGEDI--- 220
+K KK+N+ +L +K T+ DK+ D
Sbjct: 199 KKYKYNFAKAEKIAKKHNWKSNELFDKSKSQNPTKTPETTQIPDKSETPQTPEKSDTLQT 258
Query: 221 -------KIGAVTDEDLIKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTC 273
K+G + D D IKL P E+K IDW +K+ L+PLTTVGNLPFRRICKEFGAD+TC
Sbjct: 259 PEKPKEEKVGPILDTDEIKLHPDEKKKIDWKDKIMLAPLTTVGNLPFRRICKEFGADITC 318
Query: 274 GEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLN 333
GEMAL LLKG+++EWALVKRHE+EDLFG QI GNNP ++T+ QLL + TE+DF+DLN
Sbjct: 319 GEMALAPRLLKGVREEWALVKRHESEDLFGVQIAGNNPGVLTRCCQLLNDETEVDFVDLN 378
Query: 334 IGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPK 393
+GCPIDL+YK+GGG GM++RL LE+ V+ A+++L IPFTVK RTGVY DK I H ++ K
Sbjct: 379 VGCPIDLVYKQGGGCGMLNRLNILESVVKSATEVLDIPFTVKTRTGVYADKPIAHKLMSK 438
Query: 394 MSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIA 453
+WGAS+I +HGRSRE RYTK +DW+YIE CAQ A+P PVYG GDI S++DY +RK
Sbjct: 439 FKDWGASMINIHGRSREQRYTKLADWDYIEKCAQVASPIPVYGTGDILSWDDYQRVRKTY 498
Query: 454 PTVKGVMIGRGALI 467
PTV+GV I RGALI
Sbjct: 499 PTVQGVSIARGALI 512
Score = 121 bits (291), Expect = 6e-26
Identities = 57/84 (67%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
Query: 508 QGVESTRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTDWIK 567
QGV R L+ YVPVG+L PPQR+N RPP Y GRDDLETLMASSNC DWIK
Sbjct: 502 QGVSIARGALIX--XXXXXYVPVGILVEPPQRMNNRPPYYRGRDDLETLMASSNCADWIK 559
Query: 568 ISEMLLGPVPDGFQFLPKHKANSY 591
+SEMLLG VPDGF FLPKHKAN++
Sbjct: 560 LSEMLLGKVPDGFNFLPKHKANAW 583
>UniRef50_Q9TYN2 Cluster: Putative uncharacterized protein
Y37E11B.5; n=2; Caenorhabditis|Rep: Putative
uncharacterized protein Y37E11B.5 - Caenorhabditis
elegans
Length = 554
Score = 455 bits (1121), Expect = e-126
Identities = 238/535 (44%), Positives = 331/535 (61%), Gaps = 25/535 (4%)
Query: 64 KTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNN-CKFIHDSKQFLNSKPK 122
K ++RG NK+R K K + + S Q C++ C HD FL KP
Sbjct: 38 KRERRGMNKTRRKDMKHAETRIRAAAVRLCPSVIQPVACKFGEKCNCEHDISAFLAKKPA 97
Query: 123 DIGDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNREKFDQWKDDTKNTLQPSLQTQL 182
DIG C +Y RG CP ACR+G H+ G + + ++ + T N +Q L
Sbjct: 98 DIGVACPLYDARGACPFSYACRFGGAHLDEAGQQ--SEKSPEKPYEPTTNCHSMKIQVAL 155
Query: 183 QKKKYNFDLAEKLVKHLDTRNKSV-DKNLNTSADVGEDIKIGAVTDEDLIKLLPRERKTI 241
+K++Y+F+ EK ++ + N V + +L+T +GA+ E P ++
Sbjct: 156 RKREYDFEKTEKALEAIKNENFEVLELSLST---------VGAMCREKK----PLNMGSL 202
Query: 242 DWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDL 301
D K YL+PLTTVGNLPFRRIC ++GAD+TCGEMAL S+L G E++L+KRH E +
Sbjct: 203 D--GKKYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGTASEYSLLKRHPCEKI 260
Query: 302 FGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSV 361
FG Q+ G + K +Q++ EN ++DFID+N+GCPID++ +KGGG + R L +
Sbjct: 261 FGVQLAGGFADTMAKASQIVVENFDVDFIDINMGCPIDVVNQKGGGCALPSRPQKLFEVL 320
Query: 362 RCASKLLS--IPFTVKMRTGVYQD--KKITHTIVPKMSNWGA-SLITVHGRSREARYTKS 416
+L P TVK+RTG+ + K + K +W LIT H RS+E RYT+
Sbjct: 321 AATKSVLGGCCPLTVKIRTGMKEGVLKAPEYVEHMKKHSWHTPDLITFHPRSKEQRYTRL 380
Query: 417 SDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
++W++ +A P P++ GDI S+EDY E + P V G+MIGRGALIKPWIF EI
Sbjct: 381 ANWDFTFPVQEATKPVPLWVCGDILSWEDYYERLEQYP-VNGIMIGRGALIKPWIFTEID 439
Query: 477 EQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPVGLLERP 536
E++ WDISS +RF++LKK+ +YGL+HWGSD GVE TRRFLLE+LSF RY+PVG+LER
Sbjct: 440 ERRTWDISSTERFDLLKKFVDYGLDHWGSDDAGVERTRRFLLEFLSFQCRYIPVGILERL 499
Query: 537 PQRINERPPTYFGRDDLETLMASSNCTDWIKISEMLLGPVPDGFQFLPKHKANSY 591
PQRIN+RPP + GR++LETL++S DWI+IS LLGP P+GFQF+PKHKA+SY
Sbjct: 500 PQRINDRPPRFCGRNELETLLSSQKADDWIEISTRLLGPTPEGFQFIPKHKASSY 554
>UniRef50_Q01ML2 Cluster: H0613H07.1 protein; n=10; Eukaryota|Rep:
H0613H07.1 protein - Oryza sativa (Rice)
Length = 685
Score = 451 bits (1111), Expect = e-125
Identities = 209/394 (53%), Positives = 277/394 (70%), Gaps = 3/394 (0%)
Query: 199 LDTRNKSVDKNLNTSADVGEDIKIGAVTDEDLIKLLPRERKTIDWNNKLYLSPLTTVGNL 258
L+T +S D NL+ + + TD L RE+K ID+ KLYL+PLTTVGNL
Sbjct: 288 LNTNTESEDPNLSNGLEPSNNAS-SCRTDLITTPHL-REKKIIDFREKLYLAPLTTVGNL 345
Query: 259 PFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVA 318
PFRR+CK GAD+TCGEMA+C +LL+G EWAL++RH +EDLFG QICG P + +
Sbjct: 346 PFRRLCKTLGADITCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTV 405
Query: 319 QLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRT 378
+L+ +DFID+N+GCPID++ KG GS ++ + +++ V+ AS + P TVK+RT
Sbjct: 406 ELVDNECSVDFIDINMGCPIDIVVNKGAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRT 465
Query: 379 GVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQ-AATPCPVYGN 437
++ + +IV + +WGAS ITVHGRSR+ RY+K +DW+YI CAQ A V GN
Sbjct: 466 AFFEGRNRADSIVSDIYDWGASAITVHGRSRQQRYSKLADWDYIYQCAQKAPDQLHVVGN 525
Query: 438 GDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSN 497
GD+FS+ D+ + + MI RGALIKPWIF E+KEQ+ WDI+S +RF ILK +
Sbjct: 526 GDVFSFTDWNKHVSGCSKISTCMIARGALIKPWIFTEVKEQRHWDITSGERFNILKDFVT 585
Query: 498 YGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLM 557
+GLEHWGSD++GVE+TR FLLEWLS+ RY+PVGLL+ PQR+N RPP+Y GRDDLETLM
Sbjct: 586 FGLEHWGSDSKGVETTRYFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPSYCGRDDLETLM 645
Query: 558 ASSNCTDWIKISEMLLGPVPDGFQFLPKHKANSY 591
S + DWI+ISEMLLG VP+GF F PKHK+N+Y
Sbjct: 646 ISDSAADWIRISEMLLGKVPEGFTFTPKHKSNAY 679
Score = 54.8 bits (126), Expect = 6e-06
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 70 QNKSRPKIFKDGKESKPCPTILDVE--SSEQLKICQY-NNCKFIHDSKQFLNSKPKDIGD 126
+ KS+ ++ ++ K+ + + L +E S + C+Y ++C+F HD +L KP D+
Sbjct: 71 EKKSKRQLKRERKQEQKSSSHLCIEVGKSGNVSSCKYGDSCRFSHDIDAYLAQKPADLEG 130
Query: 127 QCHVYKVRGKCPRGIACRYGSDH--ITADGFNIVNREKFDQWKDDTKNTLQPSLQTQLQK 184
C + CP G+ CR+ H I A N+ + + N L +Q L K
Sbjct: 131 TCPFTNLDQLCPYGLTCRFLGTHKDIHAASGNLSEKHEI--------NALNKDIQKLLWK 182
Query: 185 KKYNFDLAEKLVKHLDTRN--KSVDKNLNTSADVGED 219
KY F A +K L + KS N V D
Sbjct: 183 NKYKFPKASAQIKLLGLKEVIKSKPDAANDDKKVNHD 219
>UniRef50_Q582L4 Cluster: TRNA-dihydrouridine synthase 3, putative;
n=3; Trypanosoma|Rep: TRNA-dihydrouridine synthase 3,
putative - Trypanosoma brucei
Length = 528
Score = 418 bits (1030), Expect = e-115
Identities = 208/437 (47%), Positives = 281/437 (64%), Gaps = 10/437 (2%)
Query: 157 IVNREKFDQWKDDTKNTLQPSLQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSADV 216
+V ++ D +D ++ PS + + K D E+ L N + ++ + V
Sbjct: 85 VVRGKRKDTKRDRREDCQAPSGEAESTAGKVKHDDEERGTPALQQTNTD-ESHITVKSAV 143
Query: 217 GEDIKIGAVTDEDLIKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEM 276
A E+ ++ + K + ++NKL L+PLTTVGNLPFRR+CKE+GAD+T GEM
Sbjct: 144 AR-----ASNTEESMRERSAQHKAL-FSNKLVLAPLTTVGNLPFRRVCKEYGADITVGEM 197
Query: 277 ALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENT-ELDFIDLNIG 335
A+ +L + K EW+L++RH +ED+FG QI + P+ AQ ++E+ DF+D+N G
Sbjct: 198 AIVHNLNRLQKSEWSLLRRHSSEDIFGLQIAVSRPHDAITWAQAVEESGFSYDFVDINCG 257
Query: 336 CPIDLIYKKGGGSGMMHRLP-ALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKM 394
CP+D + G G G+ R L V+ S P T+K R G ++ H +
Sbjct: 258 CPVDKVVLSGCGCGLWERKGNRLRDVVQSLVAHQSKPVTIKCRMGPDEENPELHKHIADY 317
Query: 395 SNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAP 454
WGA+ +T+HGRSR RYTK ++W YI+ CA + T PV GNGDIFS ED VE R +
Sbjct: 318 ETWGAAAVTIHGRSRRQRYTKLANWSYIDNCA-SLTSLPVIGNGDIFSCEDIVEHRAQSK 376
Query: 455 TVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTR 514
V MIGRGAL+KPWIF EIK ++WDISS +RFE+L+++ N+GL HWG+D +GV +TR
Sbjct: 377 NVSSFMIGRGALVKPWIFEEIKTGRVWDISSHERFEMLRRFCNFGLSHWGADERGVLNTR 436
Query: 515 RFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTDWIKISEMLLG 574
RFL EWLSFL RYVPVGLLERPPQRINERPP Y GRD+LETLMAS + DWI+ISEMLLG
Sbjct: 437 RFLCEWLSFLCRYVPVGLLERPPQRINERPPYYEGRDELETLMASDSAVDWIRISEMLLG 496
Query: 575 PVPDGFQFLPKHKANSY 591
P D F+F PKHK+N+Y
Sbjct: 497 PAGDKFRFTPKHKSNAY 513
>UniRef50_Q54CU9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 671
Score = 415 bits (1023), Expect = e-114
Identities = 189/391 (48%), Positives = 266/391 (68%), Gaps = 4/391 (1%)
Query: 202 RNKSVDKNLNTSADVGEDIKIGAVTDEDLIK-LLPRERKTIDWNNKLYLSPLTTVGNLPF 260
+ + +K T E + T+ D++ L E+K I++ N+L L+PLTTVGNLPF
Sbjct: 280 KTEKTEKTETTETKKEEFKQSNENTEIDIMTPLKANEKKRINFENQLILAPLTTVGNLPF 339
Query: 261 RRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQL 320
RRICK GAD+T GEMAL LL+G K E AL+KRH ED FG QICG+ K A+
Sbjct: 340 RRICKRLGADITIGEMALTTKLLEGTKSELALLKRHPCEDKFGVQICGSYVDAAVKCAEF 399
Query: 321 LQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGV 380
++ + DF+D+N GCPIDL+ G G+ +M R +E +R S LS P T+K+R G
Sbjct: 400 IENEIDADFVDINSGCPIDLVCNMGAGAALMERPKKVEQLLRGISSSLSCPTTIKIRIGK 459
Query: 381 YQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDI 440
+D H ++P + WGA +T+HGRSR RY++ ++W+Y++ C++ ++ P+ GNGDI
Sbjct: 460 SEDAPTAHKLIPSLGEWGACAVTLHGRSRAQRYSRLANWDYVKQCSEVSS-IPLIGNGDI 518
Query: 441 FSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGL 500
++Y+D V + + V +MI RGALIKPWIF EIKE++ WDIS+ +R + ++ ++NYGL
Sbjct: 519 YNYQDVVNIYD-SSKVSSIMIARGALIKPWIFTEIKEKREWDISASERLDFIRDFANYGL 577
Query: 501 EHWGSDTQGVESTRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASS 560
+HWGSD GV++TR+FLL WLSF +RY+PVGLL++ +NERPP YFGR DLETL+AS+
Sbjct: 578 DHWGSDRIGVDNTRKFLLNWLSFSHRYIPVGLLDK-VHYMNERPPAYFGRSDLETLLAST 636
Query: 561 NCTDWIKISEMLLGPVPDGFQFLPKHKANSY 591
DWIKI+EM LGPV + F+PKH +NSY
Sbjct: 637 QVKDWIKITEMFLGPVTSDYSFVPKHNSNSY 667
Score = 69.3 bits (162), Expect = 3e-10
Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 47 LEFKKT-KIEITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYN 105
L FKK K+E+ DK K + R Q ++ K CP I S+ L +C++N
Sbjct: 73 LPFKKIEKVEV--DKAAKKKEFRNQ-------LRESMNDKLCPKI-----SKGL-VCEFN 117
Query: 106 N-CKFIHDSKQFLNSKPKDIGDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNREKFD 164
CKF HD +++L SKPK IG C ++ G+C G+ C +G HI D IVN+E
Sbjct: 118 ETCKFSHDVEKYLASKPKSIG-ICQNFQTYGECKYGLNCYFGECHI-VDNKTIVNKELIG 175
Query: 165 QWKD-DTKNTLQPSLQTQLQKKKYNFDLAEKL-------VKHLDTRNKSVDKNLNTSAD 215
+ + T N + +Q QL+ Y F +E V+ + RN + +KN N D
Sbjct: 176 KVEPVKTLNEVSNEIQIQLKTNNYPFPKSEIYFNENGISVRQIKGRNNNNNKNNNKQND 234
>UniRef50_Q010A0 Cluster: tRNA-dihydrouridine synthase; n=1;
Ostreococcus tauri|Rep: tRNA-dihydrouridine synthase -
Ostreococcus tauri
Length = 639
Score = 410 bits (1009), Expect = e-113
Identities = 209/505 (41%), Positives = 312/505 (61%), Gaps = 26/505 (5%)
Query: 98 QLKICQYNN-CKFIHDSKQFLNSKPKDIGDQCHVY--KVRGKCPRGIACRYGSDHITADG 154
Q ++C+ C + HD + SKP D+ V+ CP G+ CR+ S H
Sbjct: 131 QGEVCRLGKRCGYSHDLSAYRASKPSDVERAACVFINAESDSCPFGVRCRFESSH----- 185
Query: 155 FNIVNREKFDQWKDDTKNTLQPSLQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSA 214
+ K D+ + N L ++Q +L + +Y F ++K ++ N V K L+ +
Sbjct: 186 ----RKMKSDKTVEMPMNILDDAMQKRLSRNEYPFPRSDKALRE---GNLEV-KCLSFAQ 237
Query: 215 DVGEDIKIGAVTDEDLIKLLPRERK-TIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTC 273
D + G + + ++ RE++ ++++ K+Y++PLTTVGNLPFRRIC + GAD+T
Sbjct: 238 KHKLDRREGFLGSFEPGRVNAREKRVSLEFKGKIYVAPLTTVGNLPFRRICTDLGADITV 297
Query: 274 GEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLN 333
EMA+ +LLKG ++EWALV+RH E FG QICG P ++T+ A+LL DFID+N
Sbjct: 298 SEMAMASNLLKGDRKEWALVRRHPIEKCFGIQICGGYPDLMTRCAELLDNEVHCDFIDVN 357
Query: 334 IGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQD--KKITHTIV 391
+GCPID + KG G +M L+ VR + + S P T+K+R G + D + + H I+
Sbjct: 358 MGCPIDGVCAKGAGGSLMRDTDRLKRVVRSMTSVSSTPVTIKLRMGYFDDPSRYVAHDII 417
Query: 392 PKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAA--TPCPVYGNGDIFSYEDYVEM 449
K +WGA T+HGR+RE RY++ +DW YI CA A+ P+ GNGD+++Y+D+ E
Sbjct: 418 SKAKSWGAYAATLHGRTREQRYSRLADWSYIHRCADASALNNLPLIGNGDVYTYQDWNE- 476
Query: 450 RKIA-PTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQ 508
+IA + MIGRGA+IKPW+ EIKEQ+ WDIS+ +R ++ K + +YGLEHWGSD+
Sbjct: 477 -QIANEKISTCMIGRGAIIKPWLMTEIKEQRHWDISANERLDLFKDFVHYGLEHWGSDSV 535
Query: 509 GVESTRRFLLEWLSFLYRYVPVGLLER-PPQRINERPPTYFGRDDLETLMASSNCTDWIK 567
GVE TRR+LLEW+S+ +RYVP+GLLE+ +++ RP Y GR DLET +AS DW++
Sbjct: 536 GVEKTRRYLLEWMSYTHRYVPIGLLEQNVVPKLHLRPMRYVGRSDLETKLASDKLEDWLE 595
Query: 568 ISEML-LGPVPDGFQFLPKHKANSY 591
+SE+ LG F+F+PKH +NSY
Sbjct: 596 LSELSGLGKPDPSFRFVPKHASNSY 620
>UniRef50_Q5KC68 Cluster: TRNA dihydrouridine synthase, putative;
n=2; Filobasidiella neoformans|Rep: TRNA dihydrouridine
synthase, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 725
Score = 407 bits (1003), Expect = e-112
Identities = 190/376 (50%), Positives = 259/376 (68%), Gaps = 16/376 (4%)
Query: 231 IKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEW 290
+ L P E++ ++W YL+PLTTVGNLPFRR+C ++GA +T EMAL + L+ G K+EW
Sbjct: 344 VPLRPEEKRRLNWEGGRYLAPLTTVGNLPFRRLCVDYGATITVSEMALAQPLVYGAKEEW 403
Query: 291 ALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTE----LDFIDLNIGCPIDLIYKKGG 346
ALV+RHE+E +FG Q+ G P + A+++ +DF+D+N+GCPIDL++ +G
Sbjct: 404 ALVRRHESEKMFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDLVFNQGA 463
Query: 347 GSGMMHRLPALETSVRCASKLLS-IPFTVKMRTGVYQDKKITHTIVPK-MSNWGASLITV 404
GS +M L + ++ L IP TVK RTGV K H ++P+ ++ WGA +T+
Sbjct: 464 GSALMDSPGRLGKLLVGMNRALGDIPLTVKFRTGVAHGKPNAHKLIPRFVTEWGAGALTI 523
Query: 405 HGRSREARYTKSSDWEYIETCAQAAT---------PCPVYGNGDIFSYEDYVEMRKIAPT 455
HGRSR+ RY+K +DWEYI+TC A P P++GNGD FS Y E +
Sbjct: 524 HGRSRQQRYSKPADWEYIKTCVTALRESVADANLPPVPIFGNGDCFSAASYYEEMDRSG- 582
Query: 456 VKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRR 515
V GVM+ RGALIKPWIF EIKE++ WDIS+ +R E +KK++ +GL HWGSDTQGV +TRR
Sbjct: 583 VDGVMVARGALIKPWIFTEIKERREWDISAVERLEGIKKFAEFGLSHWGSDTQGVNTTRR 642
Query: 516 FLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTDWIKISEMLLGP 575
FL E LSF +RY+P+GLLER P ++NERPP Y GR++LETL+AS DW+KISEM LG
Sbjct: 643 FLCEALSFQHRYIPIGLLERLPAKLNERPPAYRGRNELETLLASPFAGDWVKISEMFLGK 702
Query: 576 VPDGFQFLPKHKANSY 591
V +GF F+PKHK+N+Y
Sbjct: 703 VDEGFSFVPKHKSNAY 718
>UniRef50_Q4QEF9 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 595
Score = 404 bits (994), Expect = e-111
Identities = 193/368 (52%), Positives = 256/368 (69%), Gaps = 3/368 (0%)
Query: 226 TDEDLIKLLPRERKTID-WNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLK 284
T+E L +++ R+ + + KL L+PLTTVGNLPFRRICK FGADVT EMA+ +L +
Sbjct: 215 TEESLREVIARQSSSRGLFAEKLVLAPLTTVGNLPFRRICKSFGADVTLSEMAVVFNLNR 274
Query: 285 GLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENT-ELDFIDLNIGCPIDLIYK 343
K EW+L++RHE+ED+FG Q+ + P AQ L+ + DF+D+N GCP++ I K
Sbjct: 275 LQKSEWSLLRRHESEDIFGIQLAVSRPQEAATFAQALEASGFSYDFLDINCGCPVEKIVK 334
Query: 344 KGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLIT 403
G G G+ R L V + S P +K R G+ +D H + + S WGA+ +T
Sbjct: 335 SGCGCGLWQRTERLRDVVESLAIYQSRPVAIKCRIGLDEDIPTLHQQIHRYSAWGAAAVT 394
Query: 404 VHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGR 463
VHGRSR+ RYTK ++W+Y++ CAQ T PV GNGDI S ED +E R+ P + MIGR
Sbjct: 395 VHGRSRKQRYTKFANWDYVDQCAQL-TSLPVIGNGDIMSLEDVLEHRERQPHIASHMIGR 453
Query: 464 GALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSF 523
GALIKPW+F EIK ++ DISS +R ++LKK+ +G+ HWG+D +GV +TRRFL EWLSF
Sbjct: 454 GALIKPWLFEEIKTGQVKDISSSERLDMLKKFCAHGMAHWGADERGVMTTRRFLCEWLSF 513
Query: 524 LYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTDWIKISEMLLGPVPDGFQFL 583
L+RYVPVGLLER PQRINERPP Y GRD+LETLM+S + DW++ISE+LLGPV F+F
Sbjct: 514 LHRYVPVGLLERLPQRINERPPFYEGRDELETLMSSDSVKDWVRISELLLGPVERQFRFT 573
Query: 584 PKHKANSY 591
PKHK+NSY
Sbjct: 574 PKHKSNSY 581
>UniRef50_A3LUK5 Cluster: Dihydrouridine synthase of tRNA; n=6;
Saccharomycetales|Rep: Dihydrouridine synthase of tRNA -
Pichia stipitis (Yeast)
Length = 613
Score = 399 bits (982), Expect = e-109
Identities = 233/613 (38%), Positives = 357/613 (58%), Gaps = 56/613 (9%)
Query: 7 GVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTK 66
G+ AIK E+++QK I++ SFDD+ E + +E + K K
Sbjct: 25 GMAAIKPEFIVQKDRIVD----------------SFDDDEAEGGERGVEEGKSGKGGKKK 68
Query: 67 KRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYN--NCKFIHDSKQFLNSKPKDI 124
+RGQNK+R + + +E + C ++LD ++ +K C Y C+ H+ +++L SKP DI
Sbjct: 69 RRGQNKNRD-LKQKREEIRLCTSLLDPDN---IKTCAYGPEQCRSTHNVEEYLASKPVDI 124
Query: 125 GDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVN---REKFDQWKDDTK-NTLQPSLQT 180
C V++ G CP G+ CR+ H + ++ R + + + + + N + +
Sbjct: 125 EGICPVFRAIGYCPAGLKCRWLQSHYDKETRKLIKDLGRTEASKIELNYEVNNVSHEARG 184
Query: 181 QLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSADVGEDIKIGAVTDEDLIKLLPRERKT 240
+L+KK+Y+F +A K+++++D+ ++ D+N+ A+ E K T D + E+K
Sbjct: 185 KLRKKQYDFAIAGKVIEYIDSTVQN-DENI---ANAKEQRKNNEATYVDAPYKIA-EKKR 239
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETE- 299
+D+ N +SPLTTVGNLP+RR+ K+ GAD+T EMAL LL+ EWAL K H TE
Sbjct: 240 LDFRNAKIVSPLTTVGNLPYRRLMKKLGADITYSEMALSVPLLQATNAEWALPKAHRTEY 299
Query: 300 DLFGAQICGNNPYIITKVAQLLQENTE-LDFIDLNIGCPIDLIYKKGGGSGMMHRLPALE 358
+G QI + + KVA+++ TE + ++LN GCPIDL+Y++G GS ++ + PA
Sbjct: 300 PGYGVQIATSKHWAAAKVAEIISRETEHVSELNLNCGCPIDLLYRQGQGSALLEQ-PARL 358
Query: 359 TSVRCASKLLS--IPFTVKMRTGVYQDKKITHTIVPK-MSNWGASLITVHGRSREARYTK 415
+ A S IP TVK+RTG ++K T+V + ++ + IT+HGRSR+ RYTK
Sbjct: 359 VRILKAMNASSGDIPVTVKIRTGSKENKNTAKTLVERLLAENDVAAITLHGRSRQQRYTK 418
Query: 416 SSDWEYIETCAQAA-----------------TPCPVYGNGDIFSYEDYVEMRKIAPTVKG 458
+DW YI Q C V GNGD+FS+ D+ +
Sbjct: 419 EADWNYIAEVGQVVQQWNDKKEENKDSRDTQRTCFV-GNGDVFSHVDWYNAVN-TDGIDS 476
Query: 459 VMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLL 518
VM+ RGALIKPWIF E++ Q+ D ++ +R +ILK +S+Y LEHWG+D GV RRF+
Sbjct: 477 VMVARGALIKPWIFEEVEAQQYLDKTATERLDILKTFSDYALEHWGTDEYGVGLARRFMC 536
Query: 519 EWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTDWIKISEMLLGPVPD 578
E+LSF +RY+P+G+LER P +INERPP + GR+++ETL+ S++ DWIKI+EM LG D
Sbjct: 537 EFLSFTHRYIPLGILERLPPKINERPPQWKGRNEMETLLGSTDYKDWIKITEMFLGKSGD 596
Query: 579 GFQFLPKHKANSY 591
F F PKHK+NSY
Sbjct: 597 DFVFTPKHKSNSY 609
>UniRef50_Q6C4K3 Cluster: Similar to DEHA0D12364g Debaryomyces
hansenii; n=1; Yarrowia lipolytica|Rep: Similar to
DEHA0D12364g Debaryomyces hansenii - Yarrowia lipolytica
(Candida lipolytica)
Length = 622
Score = 392 bits (966), Expect = e-107
Identities = 222/560 (39%), Positives = 320/560 (57%), Gaps = 37/560 (6%)
Query: 59 DKNDSKTKKRGQNKSRPKIFKDGKES-KPCPTILDVESSEQLKICQYNN-CKFIHDSKQF 116
+K + K KK GQNK+R K K++ K C + L + + C Y + CKF HD +++
Sbjct: 68 EKPEEK-KKGGQNKNRS--LKQRKDAIKMCSSALQFKEDGSPQECSYGDKCKFEHDLQKY 124
Query: 117 LNSKPKDIGDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNREKFDQWKDDTKNTLQP 176
L SKPKDI C V+ + G+CP+G CR+ S H ++G +V+ EK D+ +
Sbjct: 125 LESKPKDIEGVCPVFDLTGQCPQGYKCRWLSSHRDSEGKLLVDEEKKKANADNKELNHVF 184
Query: 177 SLQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSADVGEDIKIGAVTDEDLIKLLPR 236
LQ+KKY+ +++ +K +D + + + T + E I+I D ++ P
Sbjct: 185 KHLNPLQRKKYDLSKSDEAIKLIDAQIVRDEDDEQTKLEKKETIEI------DTGRIRPS 238
Query: 237 ERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRH 296
E+K +D K +SPLTTVGNLP+RR+ K+ GADVT GEMAL L++G K EWAL + H
Sbjct: 239 EKKKLDLKGKYIVSPLTTVGNLPYRRLMKDLGADVTYGEMALTLPLIQGHKAEWALTRCH 298
Query: 297 ETE----DLFGAQICGNNPYIITKVAQLLQE-NTELDFIDLNIGCPIDLIYKKGGGSGMM 351
+E + FG Q+ + K AQ + E T + I+LN GCPIDL+Y++G GS +M
Sbjct: 299 SSEVTEGNHFGVQVTAPKHWQAIKAAQAVSELCTGISEINLNCGCPIDLVYRQGAGSALM 358
Query: 352 HRLPALETSVRCASKLL-SIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSRE 410
+ VR S + +P TVKMRTG ++ + T+HGRSR
Sbjct: 359 DQQGKTARIVRGMSMVSGDVPITVKMRTGTGSTPTAKKLTARLLAEGQTAAFTLHGRSRA 418
Query: 411 ARYTKSSDWEYIETCAQAAT-------------------PCPVYGNGDIFSYEDYVEMRK 451
RYTK +DW YI A + P V GNGD +++ D+
Sbjct: 419 QRYTKLADWNYIREVADSVVNTRDDVREKSELDDHVISHPTWVVGNGDCYTWSDWHRAVD 478
Query: 452 IAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVE 511
A V VM+ RGALIKPWIF E++ ++ D S+ +R E +K++ YGLEHWGSD GV
Sbjct: 479 EA-HVDSVMVARGALIKPWIFEEVESRQHIDKSATERLEYFQKFAQYGLEHWGSDQYGVN 537
Query: 512 STRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTDWIKISEM 571
TRR+L E++SF +RYVP G+LE P ++N+RP + GRD++ETL+ SS+ DWIK++E
Sbjct: 538 QTRRYLCEFMSFTHRYVPSGILEYLPAKMNDRPDLWKGRDEMETLLGSSDYRDWIKVTER 597
Query: 572 LLGPVPDGFQFLPKHKANSY 591
LGPV D F+F PKHK+N+Y
Sbjct: 598 FLGPVGDEFEFTPKHKSNAY 617
>UniRef50_A4S3Q5 Cluster: Predicted protein; n=2; Eukaryota|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 361
Score = 386 bits (949), Expect = e-105
Identities = 174/360 (48%), Positives = 245/360 (68%), Gaps = 7/360 (1%)
Query: 238 RKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHE 297
RK +D+ KLY++PLTTVGNLPFRR+C + GAD+T EMA+ +LLKG ++EWAL++RH
Sbjct: 1 RKELDFKGKLYVAPLTTVGNLPFRRVCTDLGADITVSEMAMASNLLKGDRKEWALLRRHP 60
Query: 298 TEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPAL 357
+E +G Q+CG P ++ + A+L+ DFID+N+GCPID + KG GS +M L
Sbjct: 61 SEKCYGIQVCGGYPDLMARCAELIDNEVSCDFIDVNMGCPIDGVCAKGAGSSLMRDTDRL 120
Query: 358 ETSVRCASKLLSIPFTVKMRTGVYQD--KKITHTIVPKMSNWGASLITVHGRSREARYTK 415
+ VR + + S P T+K+R G + D K + H I+P+ WGA T+HGR+RE RY++
Sbjct: 121 KNVVRTMAAVSSTPVTIKLRMGYFDDPSKYVAHDIIPRAKAWGAFAATLHGRTREQRYSR 180
Query: 416 SSDWEYIETCAQAA--TPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFN 473
+DW YI CA A + + GNGD+++YEDY + V MIGRGA+IKPW+
Sbjct: 181 LADWSYIHRCADVAAKSEFTLIGNGDVYTYEDY-NAQVADNKVATCMIGRGAIIKPWLMT 239
Query: 474 EIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPVGLL 533
EIKEQ+ WDIS+ +R ++ K + YGLEHWGSD+ GVE TRR+LLEW+S+ +RYVP+GLL
Sbjct: 240 EIKEQRHWDISANERLDLFKDFCQYGLEHWGSDSMGVEKTRRYLLEWMSYTHRYVPIGLL 299
Query: 534 ER-PPQRINERPPTYFGRDDLETLMASSNCTDWIKISEML-LGPVPDGFQFLPKHKANSY 591
E+ +++ RP Y GR DLET +AS DW+++SE+ LG F+F+PKH +NSY
Sbjct: 300 EQNVVPKLHLRPMRYVGRSDLETKLASDRLEDWLELSEICGLGKPDASFKFVPKHASNSY 359
>UniRef50_Q5CRK5 Cluster: Ylr401cp-like protein with 2 CCCH domains
plus Dus1p tRNA dihydrouridine synthase Tim barrel; n=2;
Cryptosporidium|Rep: Ylr401cp-like protein with 2 CCCH
domains plus Dus1p tRNA dihydrouridine synthase Tim
barrel - Cryptosporidium parvum Iowa II
Length = 707
Score = 342 bits (840), Expect = 2e-92
Identities = 187/441 (42%), Positives = 260/441 (58%), Gaps = 51/441 (11%)
Query: 199 LDTRNKSVDKNLNTSADVGEDIKIGAVTDEDLIKLLPRERKTID---WNNKLYLSPLTTV 255
LD + +N ++ ++ T++ LI + E++ + NKL L+PLTTV
Sbjct: 267 LDEKGPKTITEINNQPNIEIQQELKLSTEDMLIGISIHEKEKCKHKIFRNKLILAPLTTV 326
Query: 256 GNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIIT 315
GNLPFRR+C +FGADVT EM LC +L G E AL+K+ E FG Q+ G N I
Sbjct: 327 GNLPFRRLCLKFGADVTVSEMVLCNEILSGKASELALLKKSPEEKYFGIQLAGGNKSTII 386
Query: 316 KVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPF-TV 374
K + + E+ E DFID+N CP+ ++ KG GS ++ R+ LET V+ K++ TV
Sbjct: 387 KTGEFINEHCEFDFIDINAACPLKSLHDKGAGSILVDRVSELETMVKGLKKVMDGKLVTV 446
Query: 375 KMRTG------------------------VYQDKKITHTIVPKMSNWGASLITVHGRSRE 410
K+R +Y + K TH I+ + + G +T+HGR+
Sbjct: 447 KVRMSHGGSPINKNLSEKDYFENFENWPVIYHNMK-THKILNILCDSGIDALTIHGRTSF 505
Query: 411 ARYTKSSDWEYIETCAQAATP------------------CP-VYGNGDIFSYEDYVEMRK 451
RYTK +DW YI+ C+ + CP + G GDI +++DY + +
Sbjct: 506 QRYTKEADWSYIKYCSVLNSKLYSNKVVNNIQNSNHSLICPSIIGCGDIINFQDYQQHIQ 565
Query: 452 IAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVE 511
V VMIGRGAL+KPWIF EIKE + WDIS+ +RF+I+K+Y N GLEHWG+D +G+
Sbjct: 566 -NDLVDSVMIGRGALLKPWIFTEIKENRNWDISASERFDIIKQYVNLGLEHWGTDKRGIA 624
Query: 512 STRRFLLEWLSFLYRYVPVGLLERP--PQRINERPPTYFGRDDLETLMASSNCTDWIKIS 569
TRRFLLE+LSF +RY+P+G+LE+P Q N R P Y GR+DLET++ASSN +DWIKIS
Sbjct: 625 LTRRFLLEFLSFFHRYIPIGILEQPIHTQNFNWRTPKYIGRNDLETMLASSNSSDWIKIS 684
Query: 570 EMLLGPVPDGFQFLPKHKANS 590
EM+LG VP F F+PKHKANS
Sbjct: 685 EMILGKVPSDFVFIPKHKANS 705
>UniRef50_UPI0000499494 Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 515
Score = 332 bits (815), Expect = 2e-89
Identities = 161/357 (45%), Positives = 228/357 (63%), Gaps = 12/357 (3%)
Query: 237 ERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRH 296
E+K +D KL L L T GNLPFR++ K FG DVT EM + ESL++G EWALVKR
Sbjct: 162 EKKILDLKGKLILPSLCTFGNLPFRKVVKRFGCDVTMTEMIMAESLVEGKTSEWALVKRD 221
Query: 297 ETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPA 356
+ED+FG Q+C N + K Q+L + + DF +LN CPID +YKKG G+ ++ R
Sbjct: 222 SSEDIFGIQLCVGNSMLAAKACQVLN-SVDCDFYELNCACPIDYVYKKGMGAQLIERPKR 280
Query: 357 LETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKS 416
+E+ + + P +K+RTG I ++P +++GA+++++HGR+R+ RYTKS
Sbjct: 281 IESLLHAMRSVTERPVAIKVRTGK-SSNTIQDVLLPNCADYGAAMVSIHGRTRDQRYTKS 339
Query: 417 SDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
+DW++I+ A T CPV G GDI+ Y+DY + + V V IGRGALIKPWI+ EIK
Sbjct: 340 ADWDFIKQ-ATTITQCPVIGVGDIYGYKDY--QKALDCGVATVAIGRGALIKPWIYTEIK 396
Query: 477 EQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPVGLLERP 536
E++ WDISS +R +IL++Y+ GL HWGSD QG+ TR F+ L+F+ RYVPV +
Sbjct: 397 EKRDWDISSSERLDILRQYALDGLSHWGSDAQGISKTREFMCHHLTFMTRYVPVHCVIET 456
Query: 537 PQRI-----NERPPTYFGRDDLETLMASSNCTDWIKISEMLLGPVPDGFQFLPKHKA 588
Q I N+R Y RDD+E L+ S D+IKI+EM LGP P F ++PKH++
Sbjct: 457 NQEISIKVRNDRVMCY--RDDMEKLLTSDRLEDYIKITEMFLGPAPKDFVYVPKHQS 511
Score = 60.9 bits (141), Expect = 9e-08
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 102 CQYNNCKFIHDSKQFLNSKPKDIGDQCHVYKVRGKCPRGIACRYGSDHITADGFNIVNRE 161
C+ NCK+ HD K++L+ + + C ++K G CP G C + HI G I N E
Sbjct: 64 CERENCKYSHDLKEYLSKRTDLLEGICPLFKEYGFCPNGYTCEWYKSHINEQGELITNNE 123
Query: 162 --KFDQWKDDTKNTLQPSLQTQLQKKKYNFDLAEKL----VKHLDTRNKSVDKNLNT 212
K +K+ NT +P L+ K++F + E+ K LD + K + +L T
Sbjct: 124 LMKLHPFKEPL-NTQKPETLHVLRTNKFDFKIPEEFPVPEKKILDLKGKLILPSLCT 179
>UniRef50_Q9UTH9 Cluster: tRNA dihydrouridine synthase Dus3; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus3 - Schizosaccharomyces pombe (Fission
yeast)
Length = 617
Score = 324 bits (796), Expect = 4e-87
Identities = 173/427 (40%), Positives = 254/427 (59%), Gaps = 32/427 (7%)
Query: 194 KLVKHLDTRNKSVDKNLNTSADVG-EDIKIGAVTDEDLIKLLPRERKTIDWNNKLYLSPL 252
K + + V KN S +V ++I A ++ L L P+E+ IDW ++ L+PL
Sbjct: 187 KETESVSLEETGVLKNQTVSVNVDLKEISSQARSNIALPTLRPQEKNLIDWRDRKILAPL 246
Query: 253 TTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVK--RHETE-------DLFG 303
TTVGN PFRR+C GAD EMA+C L++G + EWALV+ +E E + G
Sbjct: 247 TTVGNPPFRRLCGSLGADTFYSEMAMCYPLMQGHQPEWALVRGLNYEREMMRGGRRGILG 306
Query: 304 AQICGNNPYIITKVAQLLQENTE-LDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
Q+ + TK AQ++ E + +DF+DLN GCPIDL++++G GS ++ L +++
Sbjct: 307 VQLATGKLWQATKTAQVIAEQCDGVDFLDLNCGCPIDLVFRQGAGSSLLENPGRLLRNLQ 366
Query: 363 CASKLLS-IPFTVKMRTGVYQDKKITHTIVPKMSN-WGASLITVHGRSREARYTKSSDWE 420
+ IP TVK+R G D + ++ ++ N S T+HGRSR+ RY+K+++W+
Sbjct: 367 GMDAVSGQIPVTVKLRMGNKDDHPVVKNLIGRIFNETNTSAATLHGRSRQQRYSKNANWD 426
Query: 421 YIETCAQAAT-----------------PCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGR 463
YI A P + GNGD +S++D+ + + V VMI R
Sbjct: 427 YIGEIASKVKSMNERIDELPEDSLRTQPLSLIGNGDCYSWQDWYD--GVNKGVDTVMIAR 484
Query: 464 GALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSF 523
GAL+KPWIF EI+ ++ D SS R E+L++Y N GLE+WGSD+QGV +TRRF LE++SF
Sbjct: 485 GALVKPWIFEEIEARQFIDKSSTQRLEMLEQYCNNGLEYWGSDSQGVNTTRRFFLEFMSF 544
Query: 524 LYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTDWIKISEMLLGPVPDGFQFL 583
+RY P+ L E R+N+RPP Y RD++ETL+AS+ TDW+K+SE LGP P+ F F
Sbjct: 545 FHRYTPIALYEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGPTPERFTFT 604
Query: 584 PKHKANS 590
PKHK+NS
Sbjct: 605 PKHKSNS 611
Score = 77.8 bits (183), Expect = 8e-13
Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 56 ITEDKNDS-KTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYN-NCKFIHDS 113
+ +D N K K+RGQNK R KI + + CP I + + C Y NCKF HD
Sbjct: 17 VKQDGNKKRKRKERGQNKRREKIHVK-ENNALCPAI-SIGNE-----CPYKENCKFPHDV 69
Query: 114 KQFLNSKPKDIGDQCHVYKVRGKCPRGIACRYGSDH--ITADGFNIVNREKFDQWKDDTK 171
+ +L +K DIGD+C +++ G CP G CR+ + H I ADG + ++ Q+ T
Sbjct: 70 EAYLATKAPDIGDKCPIFERYGVCPAGFKCRWLAGHVVINADGKYELIKKPDGQFTLFTV 129
Query: 172 NTLQPSLQTQLQKKKYNFDLAEKLV 196
NT+ +Q +L+ K+ + AE ++
Sbjct: 130 NTVGKEVQRKLRTKQLDLSKAESII 154
>UniRef50_Q2UL89 Cluster: Uncharacterized conserved protein; n=15;
Pezizomycotina|Rep: Uncharacterized conserved protein -
Aspergillus oryzae
Length = 730
Score = 308 bits (755), Expect = 4e-82
Identities = 226/624 (36%), Positives = 318/624 (50%), Gaps = 102/624 (16%)
Query: 64 KTKKRGQNKSRPKIFKDGKESKP-CPT-ILDVESSEQLKICQYNN-CKFIHDSKQFLNS- 119
K K GQN +R F ++ K CP+ I E S CQ+ C+F HD + +L
Sbjct: 107 KKKPTGQNTNRT--FGSSQDEKGLCPSRIFTPEFSPGA--CQWGEKCRFEHDLRTYLKEY 162
Query: 120 KPKDI---GDQCHVYKVRGKCPRGIACRYGSDHIT----ADGFNIV------NREKFDQ- 165
K D+ C V+ +GKC G CR H+T ADG + R+K Q
Sbjct: 163 KRGDLTTFDGVCPVWDAKGKCLSGWKCRLVGSHMTERETADGRKELVLVEDEERKKKAQP 222
Query: 166 -----WKDDTKNTLQPSLQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSADVGEDI 220
+D T N + L +KK A+ LD ++ ++K ++ + +V E+
Sbjct: 223 LVPFAVEDGTANIAPIEAKIALNRKKVKTPRADAYGSWLDKTSRELEKVIH-NREVHEER 281
Query: 221 KIGAVTDEDLIK------------LLPRERKTIDWNNKL-YLSPLTTVGNLPFRRICKEF 267
+ TD+ + LP E++ I + + L+PLTT GNLPFRR+C E
Sbjct: 282 GAESKTDQAEREKEDNRAQYLEPPFLPSEKRRIYFGPETPVLAPLTTQGNLPFRRLCIEL 341
Query: 268 GADVTCGEMALCESLLKGLKQEWALVKRHETEDL---------------------FGAQI 306
GA T EMAL L++G + EWAL++ HETE L FGAQI
Sbjct: 342 GAQFTYSEMALSMPLIQGQRGEWALMRAHETEMLPPTISPGADVVQGYDHSKDFRFGAQI 401
Query: 307 CGNNPYIITKVAQLLQENT-ELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCAS 365
N + K ++L T L IDLN GCPIDL++++G GS ++ LE +R +
Sbjct: 402 AANKHWQALKATEVLSAYTPNLRVIDLNCGCPIDLLFREGAGSALLEHPSKLERILRGMN 461
Query: 366 KLLS-IPFTVKMRTGVYQDK----KITHTIVPK--------MSNWGASLITVHGRSREAR 412
+ IP T K+R G + K+ ++ + G + +T+HGRSR+ R
Sbjct: 462 AVSQEIPITAKIRMGTRDNSPNALKLAERLILGGYESSTLGLGAPGVAALTLHGRSRQQR 521
Query: 413 YTKSSDWEYIETCAQ---------------AATPCP----------VYGNGDIFSYEDYV 447
YT+ +DW YI CA P P GNGD +S+ DY
Sbjct: 522 YTRQADWGYISECAALIKRLNEKTDQVTDTVREPDPRTQPNGGKTWFLGNGDCYSHLDYD 581
Query: 448 EMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDT 507
+ A V VM+GRGALIKPW+F EI+ + D S+ +R +++K++ YGLE WGSD
Sbjct: 582 DHVNNAG-VDTVMVGRGALIKPWLFEEIQAGQYLDKSASERLSLVEKFAKYGLETWGSDE 640
Query: 508 QGVESTRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTDWIK 567
GV +TRRFLLEWLSF RY+P+GLLE P RI +RPP++ GR++LETLM S N DWIK
Sbjct: 641 HGVGTTRRFLLEWLSFACRYIPIGLLEYLPPRIQDRPPSWRGRNELETLMGSHNYKDWIK 700
Query: 568 ISEMLLGPVPDGFQFLPKHKANSY 591
I+EM LGP F+F PKHK+N++
Sbjct: 701 ITEMFLGPAHKDFRFEPKHKSNAW 724
>UniRef50_Q06053 Cluster: tRNA-dihydrouridine synthase 3; n=6;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 609
Score = 245 bits (600), Expect = 2e-63
Identities = 139/398 (34%), Positives = 221/398 (55%), Gaps = 40/398 (10%)
Query: 161 EKFDQWKDDTKNTLQPS--LQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSADVGE 218
E D ++ + +++++P +++ Q KK + D+ + + ++ RNK + ++ +V
Sbjct: 215 EIIDSFQQECRDSMKPEEEVESTPQLKKQDPDVEQPVAPQVEQRNKELSEHRMKQREVYL 274
Query: 219 DIKIGAVTDEDLIKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMAL 278
K + +E+K +D +K +SPLTTVGNLP+RR+ ++ GADVT EMAL
Sbjct: 275 KYKD--------TRYFAQEKKPLDLYHKKIVSPLTTVGNLPYRRLMRKLGADVTYSEMAL 326
Query: 279 CESLLKGLKQEWALVKRHETE-DLFGAQICGNNPYIITKVAQLLQEN-TELDFIDLNIGC 336
L++G EWAL K H +E FG Q+ + + K A+ L + +E+ I+LN GC
Sbjct: 327 AVPLIQGTNSEWALPKAHTSEFPGFGVQVACSKAWQAAKAAEALANSVSEISEINLNSGC 386
Query: 337 PIDLIYKKGGGSGMMHRLPALETSVRCASKL----LSIPFTVKMRTGVYQDKKITHTIVP 392
PIDL+Y++G GS ++ PA +RC + + IP TVK+RTG + I +V
Sbjct: 387 PIDLLYRQGSGSALLDN-PA--RMIRCLNAMNYVSKDIPITVKIRTGTKEGHPIAEGLVK 443
Query: 393 KMSN-WGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPV----------------- 434
++ N + IT+HGRSR+ RYTKS+DW+Y+ A
Sbjct: 444 RLVNETDVAAITLHGRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGKEGRDSKNR 503
Query: 435 ---YGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEI 491
GNGD+ ++ED+ + VM+ RGALIKPWIF E++ Q+ D +S +R +I
Sbjct: 504 IQFVGNGDVNNFEDWYRYLNGNENIDSVMVARGALIKPWIFEEVESQQYLDKTSTERLDI 563
Query: 492 LKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVP 529
L+ Y+ + +EHWG+D G+ RRF E++SF +RYVP
Sbjct: 564 LRDYAQFSMEHWGTDEYGISQCRRFFCEFMSFFHRYVP 601
Score = 66.1 bits (154), Expect = 2e-09
Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 29/223 (13%)
Query: 7 GVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKN-DSKT 65
G+ IK EY I+ K +K + + S D EF T KN + +
Sbjct: 28 GIAHIKPEY------IVPLKQNENQKVAIYDEEMSSDRMTNEFAGG----TNKKNKNGRG 77
Query: 66 KKRGQNKSRPKIFKDGKESKP-CPTILDVESSEQLKICQY-NNCKFIHDSKQFLNSKPKD 123
KKRGQNK+R + KE CP ++ + S+ C + +NC+F+HD +L++K +
Sbjct: 78 KKRGQNKNRDN--RQVKEQNVLCPRLIHGDISK----CSFGDNCRFVHDINLYLSTKKPE 131
Query: 124 IGDQ----CHVYKVRGKCPRGIACRYGSDHITADGFNIVNREKFDQ-----WK-DDTKNT 173
+ C V+ G CP G CR+ S H+ + ++++++ D W N
Sbjct: 132 VESNIFPSCPVFNSLGFCPMGFKCRFLSSHLNKEDNILISKKEIDPDAQTIWSVKGEVNH 191
Query: 174 LQPSLQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSADV 216
+ P + L K+++ F + ++++ +D+ + ++ +V
Sbjct: 192 ISPERKLDLIKRRFPFTKSNEILEIIDSFQQECRDSMKPEEEV 234
>UniRef50_Q2HDP2 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 641
Score = 244 bits (596), Expect = 7e-63
Identities = 140/328 (42%), Positives = 187/328 (57%), Gaps = 39/328 (11%)
Query: 302 FGAQICGNNPYIITKVAQLLQENT-ELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETS 360
FGAQI N P++ K + L + L +DLN GCP+D ++K G GS ++ LE
Sbjct: 309 FGAQIAANAPWVAVKATEALSQLLPHLRLVDLNCGCPVDAVFKSGSGSALLDSHSKLERM 368
Query: 361 VRCASKLLS-IPFTVKMRTGVYQDKKITHTIVPKMSNW-----------GASLITVHGRS 408
+R + + +P T K+R G K +V +++ G + +T+HGR+
Sbjct: 369 IRGMNAVSGEVPITAKIRMGSRDGKLTAQKLVERLALGSEDLRDMIGAPGCAAVTLHGRT 428
Query: 409 REARYT--------------------KSSDW-EYIETCAQAATPC--PVY--GNGDIFSY 443
R RYT KS+D + I + P +Y GNGD +S+
Sbjct: 429 RLQRYTKAADWGYIAECAALIKQFNEKSNDLADTIREADENTLPNGGKMYFLGNGDCYSH 488
Query: 444 EDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHW 503
+Y + A V VMIGRGAL+KPW+F EI++ + D SS +R ++K+ YG+E W
Sbjct: 489 VEYFDHVDNAK-VDSVMIGRGALVKPWVFEEIEKGQYLDKSSSERLTYIEKFVRYGMEAW 547
Query: 504 GSDTQGVESTRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCT 563
GSD G+ TRRFLLE+LSF RYVP+GLLER P +NERPP Y GRDDLETL AS N
Sbjct: 548 GSDELGLNYTRRFLLEFLSFFCRYVPIGLLERLPPNLNERPPAYRGRDDLETLFASKNYK 607
Query: 564 DWIKISEMLLGPVPDGFQFLPKHKANSY 591
DWIKISEM LGP P GF+F PKHK+NSY
Sbjct: 608 DWIKISEMFLGPAPPGFKFQPKHKSNSY 635
Score = 45.2 bits (102), Expect = 0.005
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 23/156 (14%)
Query: 7 GVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKN----- 61
GV IK EY+L +K K +S A DDN+ + + + T +
Sbjct: 48 GVAPIKAEYLLFPPG---------QKAKPTQSEAEADDNDDDAAEGRTAPTPQETQQAPQ 98
Query: 62 -DSKTK-KRGQNKSRP-KIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSKQFLN 118
D K K +RGQNK R F D + + C TI + C +HD +++L
Sbjct: 99 KDGKRKSQRGQNKEREFGTFSDAQ--RLCNTIAWTPEFSPRPCKHGDRCNALHDLRKYLK 156
Query: 119 S-KPKDI---GDQCHVYKVRGKCPRGIACRYGSDHI 150
+ DI G +C V++ GKCP G C + H+
Sbjct: 157 EGRRPDITTFGGKCPVWEKYGKCPSGWRCLFVHSHM 192
>UniRef50_Q7X346 Cluster: Putative uncharacterized protein; n=1;
uncultured Acidobacteria bacterium|Rep: Putative
uncharacterized protein - uncultured Acidobacteria
bacterium
Length = 355
Score = 200 bits (488), Expect = 8e-50
Identities = 119/326 (36%), Positives = 168/326 (51%), Gaps = 6/326 (1%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICG 308
++P+T NLP+RR+C E GA +T EM L L + E+AL++R E FG Q+ G
Sbjct: 1 MAPMTKGSNLPYRRLCVELGARITVSEMTLARRLKQKRNSEFALIRRFPGEPCFGVQLAG 60
Query: 309 NNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC-ASKL 367
N P T A L E+ DF+D+N GCPID +KG G+ + + + V +
Sbjct: 61 NKP-DETAWAAALVESRGADFVDINFGCPIDYFTRKGLGASIGRQPQRMRRLVEAIKGSV 119
Query: 368 LSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQ 427
+IP T K+R G D + + GA+ + VHGR+R ARY ++DW+ I
Sbjct: 120 TNIPVTAKIRLGWNDDDRNYLQQAQAAVDGGAAALFVHGRTRNARYRFAADWDAIARIV- 178
Query: 428 AATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKD 487
AA P PV GNGD+ + R+ + VM+ R ALIKPWIF E + WDI++++
Sbjct: 179 AAVPVPVIGNGDLLFPHEIAAARERSGCA-AVMVARAALIKPWIFREAVD-GYWDITAEE 236
Query: 488 RFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTY 547
R + ++Y EHWG D G+ R FL L F YRYVP L + + R T
Sbjct: 237 RVGLYRRYVTLAREHWGDDEHGLARIRTFLNWHLEFWYRYVP-RLEDGTFASMQRRVDTV 295
Query: 548 FGRDDLETLMASSNCTDWIKISEMLL 573
R LE L+A + I+E LL
Sbjct: 296 PARSPLEALLARGDAAAKEYIAECLL 321
>UniRef50_A4S604 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 287
Score = 197 bits (480), Expect = 8e-49
Identities = 111/288 (38%), Positives = 157/288 (54%), Gaps = 6/288 (2%)
Query: 246 KLYLSPLTTVGNLPFRRIC-KEFGADVTCGEMALCESLLKGLKQEWALVKRHETE--DLF 302
+L+L+PLT GN PFRR+C EFGA+V EMA L KG + E A V+RHE + D F
Sbjct: 3 QLWLAPLTKGGNAPFRRLCASEFGAEVVVSEMAFARFLAKGARVERARVRRHEGDAGDCF 62
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
GAQI N A + DF+DLN GCPI +K+G G+ ++ + LE V
Sbjct: 63 GAQIATNAIEEGVNAALIASGEFGADFVDLNCGCPIHETWKRGLGAALLKKPAKLERLVE 122
Query: 363 CASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI 422
+ + +P TVK+R G+ + I + N GAS + VHGR++E RYTK++D++ I
Sbjct: 123 GIASRIDVPLTVKIRLGIDSSSQ-ARRIAEGLENAGASAVVVHGRTKEQRYTKAADYDVI 181
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWD 482
+ P+ GNGD+ ++ D + R V +M+GRGALIKPWIF E +E+K W+
Sbjct: 182 RDIVRERN-IPIIGNGDVLTWYDARD-RMEHSGVAAMMVGRGALIKPWIFKEYRERKCWN 239
Query: 483 ISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPV 530
+ + R + NY E +G D G F L F RY P+
Sbjct: 240 PTVEQRVGVYYTLRNYMREGFGDDELGKRRFDEFFPWHLGFFCRYRPL 287
>UniRef50_Q7R3K2 Cluster: GLP_158_4738_3071; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_158_4738_3071 - Giardia lamblia ATCC
50803
Length = 555
Score = 183 bits (445), Expect = 1e-44
Identities = 88/162 (54%), Positives = 116/162 (71%), Gaps = 3/162 (1%)
Query: 430 TPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRF 489
TP + GNGDIF Y D R TV +I RGAL+KPWIF EIKE + D+SS+ R
Sbjct: 391 TPPLLGGNGDIFDYTDL--HRDDHSTVDYYLIARGALVKPWIFQEIKEGRRIDMSSQSRL 448
Query: 490 EILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFG 549
E+LK ++++ LE++GSD GVE R LE SF+ RY+PVG+L+ PQ++N+RPP + G
Sbjct: 449 EMLKLFASFCLEYYGSDAPGVEKARAQFLENWSFMCRYIPVGILDE-PQKLNQRPPMFRG 507
Query: 550 RDDLETLMASSNCTDWIKISEMLLGPVPDGFQFLPKHKANSY 591
RD+LETLMAS + +DW+ ISEML GPVP GF F+PKHK++ Y
Sbjct: 508 RDELETLMASQSASDWVTISEMLFGPVPAGFSFVPKHKSHGY 549
Score = 112 bits (270), Expect = 2e-23
Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQI 306
L L+P+ TVG +PFRR+C +G ++T EM +L G QE +KRH E FG Q+
Sbjct: 176 LMLAPMCTVGTIPFRRLCIHYGCEITLCEMVFARDILHGDAQELRKIKRHPDEKCFGIQL 235
Query: 307 CGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC--- 363
G ++ ++ + + DFIDLN CP D+ KK G+ + L L +SV C
Sbjct: 236 AGRGQELM-EIVNFISQCCSCDFIDLNAACPQDIATKKCCGAALAANLKKLVSSVDCMVR 294
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIE 423
+ +P +K+R G + ++ + G ++VH R+ + RY+K ++W+Y+
Sbjct: 295 GGEHYGVPVFLKIRAGDLRGDWTGDSVAQALRLSGLYGLSVHLRTAKQRYSKLANWDYLV 354
Query: 424 TCAQAATPC 432
+ A C
Sbjct: 355 SMRHALDNC 363
Score = 40.3 bits (90), Expect = 0.14
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 100 KICQYNNCKFIHDSKQF-LNSKPKDIGDQCHVYKVRGKCPRGIACRYGSDH 149
K C+ C HD +F + P CH K GKCP + C Y S H
Sbjct: 54 KQCKNPKCNAYHDLDEFSVYYTPPQTSISCHFLKTYGKCPFSVNCMYASSH 104
>UniRef50_A4XH30 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
Putative TIM-barrel protein, nifR3 family -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 328
Score = 157 bits (381), Expect = 8e-37
Identities = 82/232 (35%), Positives = 126/232 (54%), Gaps = 2/232 (0%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQ 305
KL+L+P+ + FR +C FGADVT EM +++ G ++ L+ E E + G Q
Sbjct: 7 KLFLAPMAGFTDKVFRSLCSRFGADVTVTEMVSAKAITMGSQKTKELISFSEDEKIKGVQ 66
Query: 306 ICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCAS 365
I G++P+++ + +++Q+ E DFID+N+GCP+ + K G GS +M V +
Sbjct: 67 IFGSDPHVMAEAVKIIQDEFEYDFIDINMGCPVPKVVKSGEGSALMKNPSLAAKIVEEVA 126
Query: 366 KLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETC 425
K+ P +VK+R G ++ M GAS ITVHGR+R Y+ +DWE I+
Sbjct: 127 KVSRKPVSVKIRKGFDEENINAPEFACIMQESGASFITVHGRTRTQMYSGKADWEIIK-M 185
Query: 426 AQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
+ PV NGDI +E + +I +MIGR AL PW+F +IKE
Sbjct: 186 VKEKVKIPVVANGDIVDFESAKKAYEIT-EADSIMIGRAALGNPWVFLQIKE 236
>UniRef50_Q899H0 Cluster: Nitrogen regulation protein nifR3; n=24;
Clostridia|Rep: Nitrogen regulation protein nifR3 -
Clostridium tetani
Length = 322
Score = 144 bits (348), Expect = 8e-33
Identities = 88/282 (31%), Positives = 137/282 (48%), Gaps = 8/282 (2%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETED 300
++ ++L+PL V +L FR +CK G + EM ++L + +++ + E
Sbjct: 6 LELKGNVFLAPLAGVTDLAFRGLCKRMGCTLVYTEMVSAKALFYDSDKTKDMLRFSKEEL 65
Query: 301 LFGAQICGNNPYIITKVAQ-LLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALET 359
QI G P I+ V + N + ID+N+GCP I K G GS +M
Sbjct: 66 PIAVQIFGKEPDIMANVVEKYFNSNDNVCLIDINMGCPAPKIVKNGEGSALMKNPKLASD 125
Query: 360 SVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDW 419
V K+ + P TVK R G D M N GA +T+HGR+RE Y +DW
Sbjct: 126 IVESIKKVSTKPVTVKFRKGFDNDNINALEFAKIMENSGADALTIHGRTREQMYQGKADW 185
Query: 420 EYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE-- 477
E I+ + + PV GNGD+F+ ED + M + + GVM+ RGAL PWIFN+I E
Sbjct: 186 EIIKK-VKESVKIPVIGNGDVFTGEDAINMIE-STNCDGVMVARGALGNPWIFNQISEAL 243
Query: 478 --QKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFL 517
Q+I + S + E+ ++ L ++ + + V R+ +
Sbjct: 244 KGQQILEPSPDEILEVCIEHFKRALYYY-DEKKAVREMRKHI 284
>UniRef50_A5BP75 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 940
Score = 140 bits (339), Expect = 1e-31
Identities = 61/87 (70%), Positives = 73/87 (83%)
Query: 505 SDTQGVESTRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTD 564
+D GVE+TR F+LEWLS+ YRYVPVGLL+ PQ++N RPP+YFGRDDLETLMAS + D
Sbjct: 570 ADDGGVETTRHFMLEWLSYTYRYVPVGLLDVIPQQLNWRPPSYFGRDDLETLMASDSAAD 629
Query: 565 WIKISEMLLGPVPDGFQFLPKHKANSY 591
WI+ISEMLLG VP GF F PKHK+N+Y
Sbjct: 630 WIRISEMLLGKVPPGFSFAPKHKSNAY 656
>UniRef50_A6LGT0 Cluster: Putative TIM-barrel enzyme; n=1;
Parabacteroides distasonis ATCC 8503|Rep: Putative
TIM-barrel enzyme - Parabacteroides distasonis (strain
ATCC 8503 / DSM 20701 / NCTC11152)
Length = 329
Score = 138 bits (333), Expect = 5e-31
Identities = 81/277 (29%), Positives = 141/277 (50%), Gaps = 9/277 (3%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQI 306
++L+P+ V ++ FR +CK FGAD+ E ++L++ + + + + E QI
Sbjct: 13 VFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERPVAIQI 72
Query: 307 CGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASK 366
G + + + A++ +E D +D+N GCP+ + KG G+GM+ +P + R K
Sbjct: 73 YGKDVASMVEAARICEE-ARPDILDINFGCPVKKVAGKGAGAGMLRNIPLMLEITREVVK 131
Query: 367 LLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCA 426
++IP TVK R G D ++ + ++ + G + +++HGR+R YT +DW I
Sbjct: 132 AVNIPVTVKTRLGWDADNRVIVDLAEQLQDCGIAALSIHGRTRAQMYTGEADWTLIRAVK 191
Query: 427 -QAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQ-KIWDIS 484
P+ GNGD+ S E + R V VMIGR ++ +PWIF E+K ++
Sbjct: 192 NNPRMQIPIIGNGDVTSAE-ICKQRFEDYGVDAVMIGRASIGRPWIFREVKHYLTTGELL 250
Query: 485 SKDRF----EILKKYSNYGLEHWGSDTQGVESTRRFL 517
++ F +ILKK +E + +G+ RR L
Sbjct: 251 PQEPFSWYLDILKKQVEQSVERL-DERRGILHIRRHL 286
>UniRef50_Q7MXX6 Cluster: TIM-barrel protein, putative, NifR3
family; n=23; Bacteroidetes/Chlorobi group|Rep:
TIM-barrel protein, putative, NifR3 family -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 333
Score = 136 bits (330), Expect = 1e-30
Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 3/231 (1%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQI 306
L L+P+ V ++ FR +CK+FGAD+ E ++L++ + + + E+E QI
Sbjct: 13 LLLAPMEDVTDVAFRIMCKQFGADLVYSEFLSADALIRQVAGTFRKMAIDESERPMAVQI 72
Query: 307 CGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASK 366
G + + + A+L E+ + IDLN GCP+ + KG GSGM+ +P + R K
Sbjct: 73 YGRDVASMVEAARLC-ESAGPNLIDLNFGCPVKRVAGKGAGSGMLRNIPLMIEITREVVK 131
Query: 367 LLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI-ETC 425
+ +P TVK R G D KI + ++ + G + +T+HGR+R YT ++DW I E
Sbjct: 132 AVKLPVTVKTRLGWDNDSKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGTADWTLIGEVK 191
Query: 426 AQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
P+ GNGD+ + ++ + V VM+GR ++ +PWIF ++K
Sbjct: 192 NNPRMQIPIIGNGDVTTPQEARRAFDVY-GVDAVMVGRASIGQPWIFEDMK 241
>UniRef50_Q1IVR5 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=2; Acidobacteria|Rep: Dihydrouridine synthase
TIM-barrel protein nifR3 - Acidobacteria bacterium
(strain Ellin345)
Length = 370
Score = 135 bits (327), Expect = 3e-30
Identities = 91/285 (31%), Positives = 149/285 (52%), Gaps = 22/285 (7%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGL-KQEWALVKRHET----EDLFG 303
L+P+ V + FRR + G CG M + GL + A +R+ T E
Sbjct: 36 LAPMAGVTDTVFRRFIRNLGG---CGLMMTEFTSADGLARMREAKARRYLTFYGNERPIS 92
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC 363
AQ+ G++ + A+++Q+ D +DLN+GCP + K GGSG++ LP ++
Sbjct: 93 AQLFGSDAETLADAAKVVQD-LGFDLVDLNLGCPSKRVVKCNGGSGLLRDLPQIKVIFES 151
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMS-NWGASLITVHGRSREARYTKSSDWEYI 422
K ++IPFTVK R G + +K++ + K++ N G + + +H R+RE Y+ ++W +I
Sbjct: 152 VRKAVTIPFTVKFRAG-WNEKELVFLELAKLAENCGLNAVAMHARTREQGYSGQANWGWI 210
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPT-VKGVMIGRGALIKPWIFNEIKEQKI- 480
Q PV GNGDI + ED M +A T VMIGR A PWIF +I++
Sbjct: 211 ADLKQ-VVKIPVIGNGDIRTPEDAAAM--VAKTGCDAVMIGRSAASNPWIFRQIEQYTAT 267
Query: 481 --WDI-SSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLS 522
+D+ +++DR+E+++ Y +E +DTQG E + W +
Sbjct: 268 GRYDLPTNEDRYEMIRMYFRMLIE---NDTQGAEGKMKQFASWFT 309
>UniRef50_Q0F181 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Mariprofundus ferrooxydans PV-1|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Mariprofundus ferrooxydans PV-1
Length = 341
Score = 135 bits (327), Expect = 3e-30
Identities = 81/245 (33%), Positives = 125/245 (51%), Gaps = 4/245 (1%)
Query: 232 KLLPRERK-TIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEW 290
+LLP R T +N L L+P+ + +LPFRRICK FG + EM ++ G ++
Sbjct: 4 RLLPGFRLGTYMIDNPLVLAPMAGITDLPFRRICKRFGVGLMVTEMIASRAVDMGRERTE 63
Query: 291 ALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGM 350
+ + + E QI G++P +T+ A+ + DF+D+N+GCP+ I K+ GS M
Sbjct: 64 RMAELGDDEHPVSIQIAGSDPEFVTEAARWAVGHGA-DFVDINMGCPVKKICKQVAGSAM 122
Query: 351 MHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSRE 410
+ + + + +P T+K+RTG K I + G L+TVHGR+R
Sbjct: 123 LRDEALVARVLAAVVAAVDVPVTLKIRTGWDDQSKNVQNIARIAEDSGIQLLTVHGRTRA 182
Query: 411 ARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPW 470
+ + WE I A+AA PV GNGDI E EM +++ GVM+GR PW
Sbjct: 183 QMFHGHACWEDI-GLAKAAVSIPVIGNGDIVDAESAREMIRVS-NCDGVMVGRAVQGNPW 240
Query: 471 IFNEI 475
+ E+
Sbjct: 241 VLGEV 245
>UniRef50_Q64MI4 Cluster: Putative TIM-barrel enzyme; n=3;
Bacteroidales|Rep: Putative TIM-barrel enzyme -
Bacteroides fragilis
Length = 324
Score = 133 bits (322), Expect = 1e-29
Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 3/231 (1%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQI 306
++L+P+ V + FR +CK+FGAD+ E ++L++ + + + + E QI
Sbjct: 13 VFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEERPVAIQI 72
Query: 307 CGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASK 366
G + + A++++E + D +D+N GCP+ + KG G+GM+ +P + R
Sbjct: 73 YGKDTEAMVGAARIVEE-AQPDILDINFGCPVKKVAGKGAGAGMLQNIPKMLEITRAVVD 131
Query: 367 LLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI-ETC 425
+ IP TVK R G D KI + ++ + G + + +HGR+R YT +DW I E
Sbjct: 132 AVKIPVTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQMYTGEADWTLIGEVK 191
Query: 426 AQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
P+ GNGD+ + E + V +MIGRG++ +PWIF E+K
Sbjct: 192 NNPRMHIPIIGNGDVTTAAGAKECFE-RYGVDAIMIGRGSIGRPWIFREVK 241
>UniRef50_Q9RDC6 Cluster: Putative uncharacterized protein SCO2497;
n=5; Bacteria|Rep: Putative uncharacterized protein
SCO2497 - Streptomyces coelicolor
Length = 406
Score = 132 bits (319), Expect = 3e-29
Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 6/231 (2%)
Query: 249 LSPLTTVGNLPFRRICKEF--GADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQI 306
L+P+ + N PFR +C+EF G + EM +L++ ++ L+ TE Q+
Sbjct: 29 LAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALVERNEKTMQLIHFDATETPRSIQL 88
Query: 307 CGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR-CAS 365
G +P + K +++ E D IDLN GCP+ + +KGGGS + ++ L VR +
Sbjct: 89 YGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLRAIVREAVT 148
Query: 366 KLLSIPFTVKMRTGVYQDKKITHTIVPKMS-NWGASLITVHGRSREARYTKSSDWEYIET 424
+P T+KMR G+ D +T+ +++ G + I +HGR+ Y ++DW+ I
Sbjct: 149 GAGDLPVTMKMRKGL-DDDHLTYLDAGRIAVEEGVTAIALHGRTTAQHYGGTADWDAIAR 207
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
+ PV GNGDI+S ED + M + GV++GRG L +PW+F ++
Sbjct: 208 LKEHVPEIPVLGNGDIWSAEDALRMVR-ETGCDGVVVGRGCLGRPWLFADL 257
>UniRef50_Q8GQD1 Cluster: NifR; n=5; Leptospira|Rep: NifR -
Leptospira interrogans
Length = 329
Score = 132 bits (319), Expect = 3e-29
Identities = 80/279 (28%), Positives = 146/279 (52%), Gaps = 7/279 (2%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQ 305
K+ LSP+ + + P RRIC++FGA + E + L+ + + + E Q
Sbjct: 12 KISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHRAPKALKMFRYKLEERPITFQ 71
Query: 306 ICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCAS 365
I GN II + A+++QE + D IDLN+GC + +G G+G++ R +
Sbjct: 72 IFGNRLEIIAEAAEIIQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRRPLLAGKIIEAIK 130
Query: 366 KLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETC 425
K ++IP T K+R G + + + G +TVHGR++E YT +DW+ I
Sbjct: 131 KRVNIPVTAKIRIGWDSTSRNYLEVSKILEESGVDALTVHGRTKEMAYTGFADWDAIGE- 189
Query: 426 AQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISS 485
+ P++GNGDI S+++ + + GV+IGR A+ PWIF+ +K++ ++S
Sbjct: 190 IKVNRKIPIFGNGDIKSFQE-ANFKIDKYLLDGVLIGRNAIGNPWIFSGVKKE---ELSW 245
Query: 486 KDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFL 524
+ ++ ++ + +E +G + G+ R+ L+++L+ L
Sbjct: 246 SEVLAVILQHLRWMIEDYGEEF-GLVLFRKHLVKYLNGL 283
>UniRef50_Q6F288 Cluster: TRNA dihydrouridine synthetase; n=3;
Mollicutes|Rep: TRNA dihydrouridine synthetase -
Mesoplasma florum (Acholeplasma florum)
Length = 325
Score = 132 bits (318), Expect = 3e-29
Identities = 81/237 (34%), Positives = 116/237 (48%), Gaps = 5/237 (2%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETED 300
++ KL P+ V N PFR I KE GAD+ C EM E + K+ ++++ + E
Sbjct: 6 VEIKGKLVQGPMAGVSNPPFRLISKEKGADLVCAEMVSVEGMTHNNKKTFSMLAVEKKEH 65
Query: 301 LFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLI-YKKGGGSGMMHRLPALET 359
QI GN+ + + EN + D IDLNIGCP + + GS ++ +
Sbjct: 66 PMSMQIFGNDVESFIVATKWIDENVDCDIIDLNIGCPAPKVAVRSASGSSLLKTPELIYD 125
Query: 360 SVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKM-SNWGASLITVHGRSREARYTKSSD 418
V+ + S P T K+R G + + + V K+ GAS ITVHGR+R Y+ +D
Sbjct: 126 IVKAVVENTSKPVTAKIRLG-WDKESVNAVEVSKLIEKAGASGITVHGRTRSEFYSGHAD 184
Query: 419 WEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
WE I+ +A PV GNGD+ M ++ GVMI RG PWIF EI
Sbjct: 185 WEKIKEVKEAVN-IPVIGNGDVIDGPSAKAMLELT-GCDGVMISRGCQGNPWIFREI 239
>UniRef50_A1IF01 Cluster: Dihydrouridine synthase family protein;
n=1; Candidatus Desulfococcus oleovorans Hxd3|Rep:
Dihydrouridine synthase family protein - Candidatus
Desulfococcus oleovorans Hxd3
Length = 326
Score = 130 bits (314), Expect = 1e-28
Identities = 79/262 (30%), Positives = 124/262 (47%), Gaps = 7/262 (2%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICG 308
L+PL + + PFRR+ K G + EM L ++ A+++ E F QI G
Sbjct: 14 LAPLAGITDAPFRRLAKAAGCALVYSEMVSSHGLFYQSEKTGAMLRTTPEEAPFAVQIFG 73
Query: 309 NNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLL 368
P ++ + A ++Q + ID+N GC + I K G G+ +M LP ++ +
Sbjct: 74 GKPAVMGRAAAMVQASGA-HMIDINFGCSVKKILKSGAGAALMKDLPLAAEVIQAVRDAV 132
Query: 369 SIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQA 428
SIP T+KMR+G D + G + + +H R+ + ++DW I Q
Sbjct: 133 SIPLTIKMRSGWNPDGSDAFHLAEIAEARGVNAVALHPRTATQGFGGTADWSLIAALKQ- 191
Query: 429 ATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE----QKIWDIS 484
T PV GNGDI ED M VM+GR A+ PWIF +I + + + S
Sbjct: 192 RTGLPVIGNGDIVLPEDARRMLD-QTGCDAVMVGRAAIGAPWIFKQINACLAGKPVVEPS 250
Query: 485 SKDRFEILKKYSNYGLEHWGSD 506
+ RFE++ +Y N + H+G D
Sbjct: 251 LEHRFEVMSEYINAMVAHYGED 272
>UniRef50_Q6AJZ5 Cluster: TRNA-dihydrouridine synthase; n=1;
Desulfotalea psychrophila|Rep: TRNA-dihydrouridine
synthase - Desulfotalea psychrophila
Length = 328
Score = 129 bits (312), Expect = 2e-28
Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 5/231 (2%)
Query: 243 WNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLF 302
+++ L+PL +L FR +C +FGAD T EM C L ++ ++ E
Sbjct: 9 FSSPFVLAPLAGYTDLSFRLLCHQFGADYTVSEMISCHGLFYNQQRTLEMLASLPEERPV 68
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
Q+ G P I+ K A L+ + + D ID+N+GCP+ + KKG G+ +M +R
Sbjct: 69 SFQLFGAEPDIMAK-ATLILNDFQPDMIDINMGCPVRKVTKKGAGAALMSTPELAYDVIR 127
Query: 363 CASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI 422
IP TVK R GV + GA+ + VHGR+R ++ +D I
Sbjct: 128 SVVDNTDIPVTVKFRAGVSSTELNGVEFGLMTERAGAAAVAVHGRTRAQAFSGVADRGII 187
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPT-VKGVMIGRGALIKPWIF 472
+ +A + PV GNGDI SY+D ++M +A T GVM+GRGAL PW+F
Sbjct: 188 KEVKEALS-IPVIGNGDILSYQDGLDM--MAETGCDGVMVGRGALGNPWVF 235
>UniRef50_Q1Q3Q8 Cluster: Strongly similar to tRNA-dihydrouridine
synthase; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Strongly similar to tRNA-dihydrouridine synthase -
Candidatus Kuenenia stuttgartiensis
Length = 341
Score = 129 bits (311), Expect = 2e-28
Identities = 79/259 (30%), Positives = 135/259 (52%), Gaps = 6/259 (2%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQ 305
+L L+P+ ++P+R IC+ FG ++ E+ ++ K+ + L+ E E Q
Sbjct: 34 ELILAPMAGFSDMPYRLICRRFGMSMSYTEVVSVSGIVWNNKKTFKLLDFKEEERPVTFQ 93
Query: 306 ICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCAS 365
+ GN+ IT+ + + E D ID+N+GC + I KG G+GM+ + +
Sbjct: 94 VVGNDECQITEACKKI-EQLGPDIIDINMGCSVSDIAGKGAGAGMLKHPSKISKMFNNLT 152
Query: 366 KLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETC 425
LS+P T K+R G + + + GASLI VHGR+R ++ ++DW+ I
Sbjct: 153 GSLSVPVTGKIRLGWDHKTRNYIEVARILEENGASLIAVHGRTRSQYFSGAADWDAIAEV 212
Query: 426 AQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISS 485
Q + PV NGD+ S D E++K GVMIGR A+ PWIF K+++ +IS
Sbjct: 213 KQ-SVKIPVIANGDVRSVADIAEIKK-RTACDGVMIGRAAIGHPWIF-RYKDRE--NISG 267
Query: 486 KDRFEILKKYSNYGLEHWG 504
++ E+++ + + E++G
Sbjct: 268 SEKIEMIRYHLDCMKEYYG 286
>UniRef50_Q8KB61 Cluster: TIM-barrel protein, nifR3 family; n=10;
Chlorobiaceae|Rep: TIM-barrel protein, nifR3 family -
Chlorobium tepidum
Length = 352
Score = 128 bits (310), Expect = 3e-28
Identities = 92/305 (30%), Positives = 145/305 (47%), Gaps = 12/305 (3%)
Query: 240 TIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETE 299
TID + + L+P+ V + FR++CK+ GAD+ E E+L +G+++ + + E
Sbjct: 10 TIDIDRPIILAPMEDVTDRAFRQLCKQHGADIVYTEFISAEALRRGVEKSIRKITVADHE 69
Query: 300 DLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALET 359
QI GN + + A + E E D++D+N GCP+ + +G G+ ++ L
Sbjct: 70 RPVAVQIFGNTVESMVEAAAIA-ETYEPDYLDINFGCPVKKVAGRGAGAALLKEPEKLSE 128
Query: 360 SVRCASKLLSIPFTVKMRTGVYQDK-KITHTIVPKMSNWGASLITVHGRSREARYTKSSD 418
+S+P T K R G D IT T V ++ + G + VHGR+R Y +D
Sbjct: 129 IASAVVNAVSLPVTAKTRIGWDHDSINITDT-VRRLEDAGIRAVAVHGRTRSDMYKGRAD 187
Query: 419 WEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE- 477
W I QA + PV NGD++ ED V M + G+MIGRG++ P+IF + K
Sbjct: 188 WGRIAEAKQACS-IPVIANGDVWLPEDAVAMFE-RTGADGIMIGRGSIGNPFIFEQAKSL 245
Query: 478 ----QKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPV-GL 532
++ S + R + + LE+ G + GV RR +L L V L
Sbjct: 246 VKEGVRLSAPSYRQRIQAAVDHLRLSLEYKG-EKYGVLEMRRHYSTYLKGLPGVSKVRNL 304
Query: 533 LERPP 537
L R P
Sbjct: 305 LVREP 309
>UniRef50_Q6MRF1 Cluster: Transcription regulator homolog yacF; n=1;
Bdellovibrio bacteriovorus|Rep: Transcription regulator
homolog yacF - Bdellovibrio bacteriovorus
Length = 337
Score = 128 bits (310), Expect = 3e-28
Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 3/228 (1%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
N L+P+ + + FR K+ A V E+ + + L+ E++ G
Sbjct: 10 NPFVLAPMAGITDHAFRTFIKKLDASVVVTELVSASGIEYKSDRTLKLMSFDESQRPIGI 69
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G P I+ + AQ+ + + DF+DLN GCP+ + KKG GS ++ A++ V
Sbjct: 70 QLFGEEPEIVARAAQVAEADG-CDFVDLNFGCPVPKVVKKGAGSAILKDPAAVQKMVSTV 128
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
+ IP T+K+RTG + + I N G S + +HGR+R YT +DW++I
Sbjct: 129 KAAIKIPLTIKIRTGWDANSRNATEICNIAYNEGVSWVAIHGRTRAQSYTGLADWDFIAD 188
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
+A T P+ GNGDI + +R GVMIGRG L P+IF
Sbjct: 189 -VKANTKIPILGNGDILTPRQ-ANLRLQQSGCDGVMIGRGCLKNPFIF 234
>UniRef50_Q0YFW9 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=8; Desulfuromonadales|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Geobacter sp. FRC-32
Length = 343
Score = 128 bits (310), Expect = 3e-28
Identities = 77/237 (32%), Positives = 128/237 (54%), Gaps = 8/237 (3%)
Query: 240 TIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETE 299
++ N L L+P+ + NLP R + +E GA +T EM L++ K+ + L++R +
Sbjct: 26 SLQLENNLILAPMAGLTNLPMRILARECGAALTFTEMISVNGLVREGKKTFDLLRRDPMD 85
Query: 300 DLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALET 359
G QI G++P ++ + A+L+++ EL ID+N+GCP+ + G GS ++ +
Sbjct: 86 RPMGIQIFGDDPQLLAEGARLVEQYGEL--IDINMGCPVRKVVGSGAGSALLREPAKVGM 143
Query: 360 SVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSN-WGASLITVHGRSREARYTKSSD 418
++ K S+P T+K+RTG + T + +++ G +T+H RSR + +D
Sbjct: 144 IIKAVRKATSLPLTIKIRTG-WGAADHTFLEIGRIAEAEGVDGVTLHPRSRAQMFEGHAD 202
Query: 419 WEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPT-VKGVMIGRGALIKPWIFNE 474
W I +A + PV G+GDIF+ D V M I T GVM+ RG L PW+F E
Sbjct: 203 WSRIRELKEALS-IPVIGSGDIFTAADVVAM--IDQTGCDGVMVARGGLGNPWLFRE 256
>UniRef50_Q1NXZ7 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3 precursor; n=2; delta proteobacterium MLMS-1|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3
precursor - delta proteobacterium MLMS-1
Length = 313
Score = 128 bits (309), Expect = 4e-28
Identities = 81/235 (34%), Positives = 122/235 (51%), Gaps = 8/235 (3%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQI 306
L +PL +LPFR +C+E+GA + EM C L++ ++ E Q+
Sbjct: 15 LVAAPLAGYSDLPFRLLCREYGAGLCYSEMLSCHGLVRRQPATIEMLATTAAERPLLMQL 74
Query: 307 CGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASK 366
G P ++ + A +L +D ID+N+GCP+ + KKG G+ +M R P L ++ A
Sbjct: 75 FGAEPEVMGEAAAIL-SRLPIDGIDINMGCPVRKVVKKGAGAALM-RDPELAAAITGAVT 132
Query: 367 LLS--IPFTVKMRTGVYQDKKITHTIVPK-MSNWGASLITVHGRSREARYTKSSDWEYIE 423
+ +P TVK+R+G + K+I + + GA+ +T+H R+ +T +DW I
Sbjct: 133 AAAGDLPVTVKIRSG-WNHKQINAPDFARLLVAHGAAAVTIHARTWSDGFTGRADWAVI- 190
Query: 424 TCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQ 478
+ A PV GNGDI SYE + M A GVMIGRGAL PW+F EQ
Sbjct: 191 AAVKRAVSVPVIGNGDIGSYEQALAM-MAATGCDGVMIGRGALGAPWVFTPGAEQ 244
>UniRef50_Q2RZL4 Cluster: NifR3 family enzyme; n=1; Salinibacter
ruber DSM 13855|Rep: NifR3 family enzyme - Salinibacter
ruber (strain DSM 13855)
Length = 443
Score = 128 bits (308), Expect = 5e-28
Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 4/238 (1%)
Query: 241 IDWNNK-LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETE 299
+D++++ L+L+P+ V + PFR +CK +GAD+ E LL+ + E ++ + E
Sbjct: 70 LDFDDRPLFLAPMEDVSDPPFRILCKRYGADMMYTEFVSSAGLLREQEHEHQKLEIFDEE 129
Query: 300 DLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALET 359
G Q+ G + ++ + D ID+N GCP+ I +K GG+G++ L +
Sbjct: 130 RPIGIQVWGGGIDEVRNATPMV-DAAGPDVIDINFGCPVRKIVQKDGGAGVLRNLDKMRN 188
Query: 360 SVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDW 419
+ + P TVK R G D + + + G + +TVH R+RE +Y + W
Sbjct: 189 ITAAVMEEATRPVTVKTRLGWDDDSIHIVDVARMLEDMGVAALTVHARTREQKYKGDARW 248
Query: 420 EYIETCAQAAT-PCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
E++ T + T P GNGD E +E V GVM+GRGAL PWIF K
Sbjct: 249 EWLRTIKEEGTRDMPFIGNGDALDPE-AIEAMFEETGVDGVMLGRGALGNPWIFERAK 305
>UniRef50_Q2IG49 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=2; Anaeromyxobacter|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Anaeromyxobacter
dehalogenans (strain 2CP-C)
Length = 352
Score = 128 bits (308), Expect = 5e-28
Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 3/231 (1%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQ 305
+ +L+PL V + PFR IC+ GA EM L+ G Q + + R ED F Q
Sbjct: 11 RYFLAPLAGVSDRPFRAICRRMGASFAYTEMVSAHGLMHGALQTSSYLDREPDEDPFAVQ 70
Query: 306 ICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCAS 365
I + P ++ + A ++ ID+N+ CP+ + G G+ M +E +VR
Sbjct: 71 IFASEPDVLARGA-VVAVQAGAGMIDVNMACPVKKVCGSGAGAAMGRDPRKVEEAVRAIR 129
Query: 366 KLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETC 425
+ +P TVK+R G + + + GA+ + +HGR+R Y+ + WE +
Sbjct: 130 AAVPVPVTVKIRAGWDEGEVNCVDVARAAEAGGAAAVALHGRTRSQLYSGKARWELVRAV 189
Query: 426 AQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
QA PV G+GD+++ D V MR+ V++ RGA PWIF E+K
Sbjct: 190 KQAVA-IPVLGSGDVWTAGDAVRMRE-ETGCDAVLVARGACGNPWIFRELK 238
>UniRef50_A6CBK4 Cluster: Predicted TIM-barrel enzyme, possibly
dehydrogenase, nifR3 family protein; n=1; Planctomyces
maris DSM 8797|Rep: Predicted TIM-barrel enzyme,
possibly dehydrogenase, nifR3 family protein -
Planctomyces maris DSM 8797
Length = 365
Score = 127 bits (306), Expect = 9e-28
Identities = 85/264 (32%), Positives = 132/264 (50%), Gaps = 10/264 (3%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGA-DVTCGEMALCESLLKGLKQEWALVKRHETEDLFG 303
++ LSPL NLPFRRI +E G + ++ LL+G ++ L + + F
Sbjct: 28 SRYLLSPLAGYTNLPFRRIVRELGGVGLATTDLVNARGLLEGSEKTLQLTQTCPEDSPFA 87
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC 363
QI G+ P + AQLL E+ + ID+N+GCP++ I K G G+ MM R + V+
Sbjct: 88 VQIFGSEPQQMKDAAQLL-ESRGVHSIDINMGCPVNRIVKGGAGASMMCRPSDTVSLVQT 146
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPK-MSNWGASLITVHGRSREARYTKSSDWEYI 422
+ + IP +VKMR G + D +++ + G + +HGR+RE + + + I
Sbjct: 147 VVEAVKIPVSVKMRLG-WDDSELSAPFFSREFEKVGVVAVAIHGRTREQGFRGVVNHDGI 205
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI---KEQK 479
+A PV GNGD+ + + M K GV IGRGAL PWIF ++ ++
Sbjct: 206 RRVVEAVDSIPVIGNGDVTNVAEADFMLKTTGCA-GVSIGRGALANPWIFRQLVQWEQTG 264
Query: 480 IWDISSK--DRFEILKKYSNYGLE 501
+D DR E+L + Y LE
Sbjct: 265 TYDPPGNFDDRLELLLRQFRYLLE 288
>UniRef50_Q9Z7D8 Cluster: Predicted oxidoreductase; n=7;
Chlamydiaceae|Rep: Predicted oxidoreductase - Chlamydia
pneumoniae (Chlamydophila pneumoniae)
Length = 335
Score = 126 bits (304), Expect = 2e-27
Identities = 91/282 (32%), Positives = 134/282 (47%), Gaps = 7/282 (2%)
Query: 239 KTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHET 298
K I + + +PL + P+R + + + EM E +L ++ L+ +E
Sbjct: 8 KNILLRSSIVYAPLAGFSDYPYRCMSALYQPGLMFCEMVKVEGILYAPERTSKLLDYNEN 67
Query: 299 EDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALE 358
GAQ+CG+NP + A++L E D IDLN GCP D I K G GSG++ +
Sbjct: 68 MRPIGAQLCGSNPETSGEAAKIL-EGLGFDLIDLNCGCPTDKITKDGSGSGLLKTPELIG 126
Query: 359 TSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSD 418
+ +SIP TVK+R+G + V + + GAS + VHGR+R Y S
Sbjct: 127 RILDKIINSVSIPVTVKIRSGWDMEHINVEDTVRIIRDAGASAVFVHGRTRAQGYHGPSK 186
Query: 419 WEYIETC-AQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
EYI A A PV+GNGDIFS E M + GV++ RG L PWI +I
Sbjct: 187 QEYISRAKAAAGKEFPVFGNGDIFSPEAAQAM--LTTGCDGVLVARGTLGAPWIGKQI-- 242
Query: 478 QKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLE 519
Q S ++ +K+ + + LEH +S +FL E
Sbjct: 243 QDYLTTGSYEKIPFIKRKAAF-LEHMRLVEDYYQSETKFLSE 283
>UniRef50_Q5M689 Cluster: Possible transcriptional regulator; n=20;
Streptococcus|Rep: Possible transcriptional regulator -
Streptococcus thermophilus (strain ATCC BAA-250 / LMG
18311)
Length = 350
Score = 126 bits (304), Expect = 2e-27
Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 2/231 (0%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
++ L+P+ V N FR I KEF A + EM + LL ++ ++ E E
Sbjct: 42 HRTVLAPMAGVTNSAFRTIAKEFSAGLVVMEMISEKGLLYNNEKTLHMLHIDENEHPMSI 101
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G + + + A +Q NT+ D +D+N+GCP++ + K G+ + + V+
Sbjct: 102 QLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLKDPDKIYHIVKEV 161
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
+ +L IP TVKMRTG + D + + G S + +HGR+RE YT D E +
Sbjct: 162 TSVLDIPLTVKMRTG-WSDSDLAVENALAAESAGVSALAMHGRTREQMYTGHCDHETLAR 220
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
A+A T P GNGD+ + +D ++ V VM+GR A+ P+IF +I
Sbjct: 221 VAKAITKIPFIGNGDVRNVQD-AKLMIEELGVDAVMVGRAAMNNPYIFTQI 270
>UniRef50_Q74EF7 Cluster: Dihydrouridine synthase family protein;
n=2; Deltaproteobacteria|Rep: Dihydrouridine synthase
family protein - Geobacter sulfurreducens
Length = 325
Score = 125 bits (302), Expect = 3e-27
Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 4/230 (1%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
N L L+P+ + NLPFR + +E GA + EM L++ K+ + L++ + G
Sbjct: 14 NNLILAPMAGITNLPFRLLAREQGAGLCFTEMVSVNGLVREGKKSFELLRSVPGDRPLGI 73
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G++P ++ +VA + +L ID+N+GCP+ + G GS +M + VR
Sbjct: 74 QLFGDDPDVMGRVAATVDGYGDL--IDINMGCPVKKVVGTGAGSALMREPDKVRAIVRAV 131
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
+ +P TVK+R+G + I G + +T+H RSR + ++DW +
Sbjct: 132 RRATRLPLTVKIRSGWSCEDANFIQIARIAEEEGCNAVTLHPRSRAQMFEGTADWTKLAE 191
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
QA PV G+GD+FS D M GVMI RGAL PWIF +
Sbjct: 192 LKQAVA-IPVIGSGDLFSAADVAAMLD-RTGCDGVMIARGALGNPWIFRQ 239
>UniRef50_A2FJB5 Cluster: TIM-barrel protein, nifR3 family protein;
n=1; Trichomonas vaginalis G3|Rep: TIM-barrel protein,
nifR3 family protein - Trichomonas vaginalis G3
Length = 301
Score = 125 bits (302), Expect = 3e-27
Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 5/221 (2%)
Query: 257 NLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITK 316
++ FR + E GAD+T EM +L+ K+ L+ E QI G++P ++ +
Sbjct: 6 DIAFREVATEKGADITVTEMVSAMALVYENKKTIDLLDISPKEKKVAVQIFGSDPDVMGE 65
Query: 317 VAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKM 376
A++L + + ++D+N+GCP I K GS ++ + V+ K + P T K+
Sbjct: 66 AARILNDY-DFSYVDINMGCPAPKIVKNNSGSHLLSNPSLVYDIVKSVVKNSNKPVTAKV 124
Query: 377 RTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYG 436
R G+ + + + GAS +TVHGR+RE YT +DW++I+ + PV G
Sbjct: 125 RKGIGGVSSMK--AIKNIEAAGASFVTVHGRTREEYYTGKADWDFIKE-VKENVKIPVIG 181
Query: 437 NGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
NGD+ S ED +E + V G+ IGRGA+ P+IFN+I+E
Sbjct: 182 NGDVDSPEDAIEKINYS-KVDGLAIGRGAIGNPYIFNQIEE 221
>UniRef50_A5D5Q0 Cluster: TRNA-dihydrouridine synthase; n=5;
Firmicutes|Rep: TRNA-dihydrouridine synthase -
Pelotomaculum thermopropionicum SI
Length = 324
Score = 125 bits (301), Expect = 4e-27
Identities = 74/228 (32%), Positives = 113/228 (49%), Gaps = 3/228 (1%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
N + +P+ + + FR + +EFG + C EM ++LL G + +L+
Sbjct: 10 NPVIAAPMAGITDKAFRILAREFGCGLVCTEMVSDQALLHGNPKTCSLLDVAGEAGPVSV 69
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
QI G+N + + A + E+ ID+N+GCP I K G G+ +M VR
Sbjct: 70 QIFGSNAACMAEAAGIA-ESRGAGIIDINMGCPTPKIVKNGEGAALMREPEKAARIVRAV 128
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
+ + +P TVKMR G + + + GA+ +TVHGR+R Y +DWE I
Sbjct: 129 VERVKVPVTVKMRKGWDDNSPNAVELARLAAEAGAAAVTVHGRTRSQLYAGKADWEII-A 187
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
+ A PV GNGD+++ +D + M + GVMIGR AL PWIF
Sbjct: 188 AVKRAVDVPVIGNGDVWTPQDALAMLE-QTGCDGVMIGRAALGNPWIF 234
>UniRef50_O25427 Cluster: Probable tRNA-dihydrouridine synthase;
n=9; Epsilonproteobacteria|Rep: Probable
tRNA-dihydrouridine synthase - Helicobacter pylori
(Campylobacter pylori)
Length = 328
Score = 124 bits (298), Expect = 9e-27
Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 8/240 (3%)
Query: 241 IDWNNK--LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHET 298
+D+ NK L+L+PL +LPFR + K+FG DVT EM SL+ + ++++
Sbjct: 1 MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAFDKTSKMLEKSPL 60
Query: 299 EDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALE 358
ED F AQI G+ ++ + + + ++ ID N GCP + G GSG++ L L
Sbjct: 61 EDHFMAQISGSKESVVKEAVEKINALEHVNGIDFNCGCPAPKVANHGNGSGLLKDLNHLV 120
Query: 359 TSVRCASKLLSIPFT-VKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSS 417
++ + S T VK+R G +KKI I +++ + VHGR+R +Y K
Sbjct: 121 KLLKTIRENTSKKITSVKVRLGF--EKKIPKEIAHALNDAPVDYVVVHGRTRSDKYQKDK 178
Query: 418 -DWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
D+E I + PV NG+I S + E+ +I G+MIGR AL PWIF +I+
Sbjct: 179 IDYESIALMKKILKK-PVIANGEIDSVKKAFEVLQIT-QADGLMIGRAALRAPWIFWQIR 236
>UniRef50_Q1VN28 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Psychroflexus torquis ATCC 700755|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Psychroflexus torquis ATCC 700755
Length = 338
Score = 123 bits (296), Expect = 2e-26
Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 4/235 (1%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQI 306
++L+P+ V +L +R + KE GAD T E L + W V+ E F QI
Sbjct: 14 IFLAPMAGVTDLAYRLLAKECGADFTVTEFTAASGLTRKNTNSWLKVETDPREKPFIPQI 73
Query: 307 CGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASK 366
G + + K +L++ + D ID+N GCP + + G+ ++ + + VR +
Sbjct: 74 FGGDISEMAKTVGMLEDRS--DVIDINFGCPAPKVCRNDAGAALLRDPDKVVSMVRRCIE 131
Query: 367 LLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCA 426
++P TVKMR G I ++++ G I VHGR+ RY+ +DW+ I+ +
Sbjct: 132 STNVPITVKMRLGTGSGPNTALEISKRLADEGVMRICVHGRTLRQRYSGIADWDQIKEIS 191
Query: 427 QAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIW 481
+ PV NGD+ + E+ A G+MIGRGA+ +P IF+EIK W
Sbjct: 192 N-SVDIPVIANGDVVDTKS-AELCLEATNAGGLMIGRGAIGRPTIFHEIKHGMGW 244
>UniRef50_Q9ZED2 Cluster: Probable tRNA-dihydrouridine synthase;
n=39; Proteobacteria|Rep: Probable tRNA-dihydrouridine
synthase - Rickettsia prowazekii
Length = 327
Score = 123 bits (296), Expect = 2e-26
Identities = 81/290 (27%), Positives = 143/290 (49%), Gaps = 15/290 (5%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVK-RHETE 299
I+ ++ + L+P++ V +L FR++ K FGA + EM +++ +Q H+
Sbjct: 7 IELSSNVILAPMSDVTDLEFRKLVKRFGAGLVVSEMIASRAMIMKSRQSMQKCAIMHDDP 66
Query: 300 DLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALET 359
Q+ G P +I + A++ E+ IDLN GCP + GS +M
Sbjct: 67 TSACVQLAGCEPDVIAEAAKM-NEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDEQLAAK 125
Query: 360 SVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDW 419
K + IP TVKMR G + + T+ +N G ++TVHGR+R Y+ +++W
Sbjct: 126 IFEATVKAVKIPVTVKMRIGWDDNTRNAPTLAKIAANSGVQMVTVHGRTRCQFYSGNANW 185
Query: 420 EYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI---- 475
++I T + A PV NGDI ++ E + G+M+GRG KPW+ ++I
Sbjct: 186 DFIRT-VKEAVKIPVIANGDITNFAKAKEALQ-RSGADGIMVGRGVYGKPWLISQIAYYL 243
Query: 476 ---KEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLS 522
KE+ I+ ++ +I+ K+ + ++++G GV R+ ++ W S
Sbjct: 244 KTGKEKPAPSIA--EQLDIITKHYDAIIDYYGKSV-GVPIARKHII-WYS 289
>UniRef50_A6EDJ3 Cluster: Probable TIM-barrel protein, NifR3 family;
n=1; Pedobacter sp. BAL39|Rep: Probable TIM-barrel
protein, NifR3 family - Pedobacter sp. BAL39
Length = 335
Score = 122 bits (294), Expect = 3e-26
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 3/231 (1%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQI 306
L L+P+ V + PFR +CK+ G D+ E E L++ + A + E E G QI
Sbjct: 15 LLLAPMEDVSDPPFRFVCKQSGVDMMYTEFISSEGLIRDAAKSRAKLDIFEYERPIGIQI 74
Query: 307 CGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASK 366
G+ + + ++ D +D+N GCP+ + +G GS ++ + + +
Sbjct: 75 FGSEIDHMREATEIASMAGP-DLMDINYGCPVKQVACRGAGSALLQDIDKMVEMTKAVVN 133
Query: 367 LLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI-ETC 425
+P TVK R G + K + ++ + G +T+HGR+R Y +DW I E
Sbjct: 134 ATHLPVTVKTRLGWDDNTKNVEEVAERLQDIGIQGLTIHGRTRAQMYKGEADWTLIREIK 193
Query: 426 AQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
P++GNGD+ S + + R + V G+MIGR A+ PWIF EIK
Sbjct: 194 RNPRIKIPIFGNGDVDSIQKAADWR-LEYEVDGIMIGRAAIGYPWIFREIK 243
>UniRef50_P37567 Cluster: Probable tRNA-dihydrouridine synthase 1;
n=31; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
1 - Bacillus subtilis
Length = 333
Score = 122 bits (293), Expect = 4e-26
Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 2/231 (0%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETED 300
I N++ L+P+ V N FR KEFGA + C EM +++L + ++ E E
Sbjct: 7 IQLKNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGMLYIDEREK 66
Query: 301 LFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETS 360
QI G + + A+ + +NT D ID+N+GCP+ I K G+ + +
Sbjct: 67 PLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDPDKIYEM 126
Query: 361 VRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWE 420
V ++ P TVKMR G +D + G + +HGR+R Y +++W+
Sbjct: 127 VSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQMYEGTANWD 186
Query: 421 YIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWI 471
I+ Q+ + PV GNGD+ + +D M V GVMIGR AL PW+
Sbjct: 187 IIKEVKQSVS-IPVIGNGDVKTPQDAKRMLD-ETGVDGVMIGRAALGNPWM 235
>UniRef50_A4TZK1 Cluster: Dihydrouridine synthase, DuS; n=4;
Proteobacteria|Rep: Dihydrouridine synthase, DuS -
Magnetospirillum gryphiswaldense
Length = 335
Score = 121 bits (291), Expect = 6e-26
Identities = 76/285 (26%), Positives = 142/285 (49%), Gaps = 13/285 (4%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
N + L+P++ V ++P RR+ K GA + EM +++++ +Q + E
Sbjct: 18 NPVILAPMSGVTDMPCRRLVKRMGAGLVVSEMIASQAMIRANRQTMKMASNCAEEHPMSV 77
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKG-GGSGMMHRLPALETSVRC 363
Q+ G P ++ + A+ + + ID+N+GCP+ + KG GS +M +
Sbjct: 78 QLAGCEPEVMAEAAR-MNADRGAAIIDINMGCPVKKVAVKGEAGSALMKDEILAGQLMEA 136
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIE 423
+ + +P T+K R G ++ + G ++T+HGR+R+ YT ++DW+++
Sbjct: 137 TVRAVDVPVTLKCRMGWDHNRLNAPRLARIAQESGIKMVTIHGRTRQQFYTGTADWKFVR 196
Query: 424 TCAQAATPCPVYGNGDIFSYEDYVEMRKIAPT-VKGVMIGRGALIKPWIFNEIKE----- 477
+ A PV NGDI + +D + R +A + GVMIGRG+ +PW ++
Sbjct: 197 Q-VKDAVDIPVIVNGDIETIDDAI--RALAESGADGVMIGRGSYGRPWFPGQVAHYLATG 253
Query: 478 QKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLS 522
++ D + + IL ++ + L H+G+DT GV R+ + W S
Sbjct: 254 ERPADPALDQQLAILLEHFDDMLSHYGTDT-GVRMARKH-IAWYS 296
>UniRef50_A4EC62 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 347
Score = 120 bits (289), Expect = 1e-25
Identities = 68/230 (29%), Positives = 103/230 (44%), Gaps = 4/230 (1%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICG 308
++P+ V + +R +C+ GA++ EM L + W LV + E Q+ G
Sbjct: 21 MAPMAGVTDPAYRIMCRRRGANLAYSEMVSVAGLAYASNKTWRLVLPADEEQQICVQLFG 80
Query: 309 NNPYIITKVAQLLQENT--ELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASK 366
+ P ++E L ID+N+ CP + KG GS +M E V A
Sbjct: 81 SKPEQFASAVAAVEERVGDRLSLIDINMACPARKVVTKGEGSALMRTPDLAEKIVEAAVG 140
Query: 367 LLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCA 426
+P TVK+R G Y + + T + GA+ + VHGR YT +DW ++ A
Sbjct: 141 AAHVPVTVKIRKGFYAEDRNAATFAQMLEGAGAAAVAVHGRCATQLYTGQADWSVVDEVA 200
Query: 427 QAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
A PV G+GD+FS ED E + V I RG PW+F + +
Sbjct: 201 D-AVEIPVIGSGDVFSAEDAAEHLQ-GSGASAVFIARGIYGNPWVFGDAR 248
>UniRef50_O67533 Cluster: Probable tRNA-dihydrouridine synthase;
n=1; Aquifex aeolicus|Rep: Probable tRNA-dihydrouridine
synthase - Aquifex aeolicus
Length = 316
Score = 120 bits (289), Expect = 1e-25
Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 10/251 (3%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLK-GLKQEWALVKRHETEDLFGA 304
++ L+P+ + + FRR+C+ GAD T E+ +L+ G+ + A E E
Sbjct: 7 EVILAPMASYTHSAFRRLCRRLGADRTYTELISAVGVLRNGIPMKLAYFT--EEERPIHI 64
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC- 363
Q+ G+NP I + + ++ + + DFID+N GC + + + M+ P + V+
Sbjct: 65 QVFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPLMGEVVKET 124
Query: 364 --ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEY 421
A K IP + K+R G +D+ IV ++ G SLI +H R+ + ++ + W
Sbjct: 125 VEALKPYGIPVSAKIRLGFEKDE--VERIVEELQKAGVSLIAIHARTAKQGFSGKALWHR 182
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIW 481
I+ + A+ P+ G+GD+ S+ D M + GVM+GR AL PWIF E KE++
Sbjct: 183 IKEAKKVAS-VPIIGSGDVKSWRDIERMFE-ETECDGVMVGRAALSNPWIFKEFKEKRDI 240
Query: 482 DISSKDRFEIL 492
++ K+R + +
Sbjct: 241 EVGLKERMDFI 251
>UniRef50_Q8G7W8 Cluster: Possible NifR3-like protein; n=4;
Bifidobacterium|Rep: Possible NifR3-like protein -
Bifidobacterium longum
Length = 414
Score = 119 bits (287), Expect = 2e-25
Identities = 76/250 (30%), Positives = 118/250 (47%), Gaps = 6/250 (2%)
Query: 231 IKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGAD-VTCGEMALCESLLKGLKQE 289
+ + P + I + LSP+ V N PFR IC+E+G D + EM +L+ +
Sbjct: 33 VHIAPVQLGNITVPTPVVLSPMAGVTNWPFRVICEEYGPDGLYVAEMITARALVAHNPKA 92
Query: 290 WALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSG 349
L ++E + Q+ G NP I + A+++ + D +DLN GCP+ + ++GGGS
Sbjct: 93 LRLCHFAKSEKIRSLQLYGVNPSITEQAAKIVVDGNMADHVDLNFGCPVPKVTRRGGGSA 152
Query: 350 MMHR---LPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHG 406
+ + L V + IP T K+R G+ + + G +T+H
Sbjct: 153 LPWKTDIFTELLQRVVAVCEPAGIPVTAKIRVGIDHNHETFLEAGHIAQEEGCKAVTLHA 212
Query: 407 RSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGAL 466
R+ Y SDW I + PV+GNGDI+ ED +EM + GV IGRG
Sbjct: 213 RTTAEYYGGHSDWSRIGELKEHLN-IPVFGNGDIWGAEDALEMVR-ETGCDGVAIGRGCQ 270
Query: 467 IKPWIFNEIK 476
+PW+F IK
Sbjct: 271 GRPWLFANIK 280
>UniRef50_A5EVV4 Cluster: Dihydrouridine synthase; n=1;
Dichelobacter nodosus VCS1703A|Rep: Dihydrouridine
synthase - Dichelobacter nodosus (strain VCS1703A)
Length = 318
Score = 117 bits (282), Expect = 8e-25
Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 6/230 (2%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFG--AQI 306
L+P+ + +LP+R +C+ FG+ T EM + + L + + + F Q+
Sbjct: 16 LAPMAGISDLPYRSLCQRFGSHYTIAEMVDARPQFLAMPES-QLRLQFDDDARFPKIVQL 74
Query: 307 CGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASK 366
G +PY++ + AQ++Q D ID+N+GCP + K+ GS ++ LP +E + ++
Sbjct: 75 VGGDPYLMAETAQVMQA-LGCDVIDINMGCPAKKVGKQNAGSALLSDLPQVEKILAQVTR 133
Query: 367 LLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCA 426
++SIP T+K R G + T+ N G + +TVHGR+R R+ ++ ++ I
Sbjct: 134 VVSIPVTLKTRLGFNEQTMTIETVAKIAENTGVAALTVHGRTRAQRFNGTAHYDEIGR-V 192
Query: 427 QAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
+A T P+ NGDI + ++ + GVMIGR A PW+ ++
Sbjct: 193 KAQTSLPIIVNGDITTTAQAQDLIQ-QFGFDGVMIGRAACGNPWLLAHMR 241
>UniRef50_Q6A959 Cluster: TIM-barrel enzyme, NifR3 family; n=1;
Propionibacterium acnes|Rep: TIM-barrel enzyme, NifR3
family - Propionibacterium acnes
Length = 411
Score = 116 bits (279), Expect = 2e-24
Identities = 73/254 (28%), Positives = 127/254 (50%), Gaps = 9/254 (3%)
Query: 229 DLIKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQ 288
D + L+ T+ + + L+P+ V N FR++C E GA + EM L+ G +
Sbjct: 34 DPLTLIAPSGGTVSVDTPVVLAPMAGVTNAAFRQLCAEQGAGLYVCEMITSRGLVYGDHK 93
Query: 289 EWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGS 348
++ E ED+ Q+ G +P ++ + +L E ++ +DLN GCP+ + +KGGG
Sbjct: 94 THGMLAFAECEDVRSVQLYGVDPGMVGEATSILCEKYGVNHVDLNFGCPVPKVTRKGGGG 153
Query: 349 GM---MHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMS-NWGASLITV 404
+ + R A+ ++ A +P TVK R G+ + IT+ + + + GA+ + +
Sbjct: 154 VLPWKLDRFAAVVSAAVQAGDAHGVPVTVKTRIGI-DPEHITYIDSARAAVDSGAAAVCL 212
Query: 405 HGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPT-VKGVMIGR 463
H R+ Y S W+ I + PV GNGDI+ D + M + T GV +GR
Sbjct: 213 HARTVAEAYAGHSHWDAIGELVK-TVDVPVIGNGDIWEASDAMAM--VGQTGCAGVEVGR 269
Query: 464 GALIKPWIFNEIKE 477
G L +PW+F ++ +
Sbjct: 270 GCLGRPWLFRDLAD 283
>UniRef50_A4M5I1 Cluster: Dihydrouridine synthase, DuS; n=1;
Petrotoga mobilis SJ95|Rep: Dihydrouridine synthase, DuS
- Petrotoga mobilis SJ95
Length = 301
Score = 115 bits (277), Expect = 3e-24
Identities = 75/278 (26%), Positives = 139/278 (50%), Gaps = 11/278 (3%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
N++ L+P+ + PFR IC+ FGA T EM +S+++ ++ ++ + + ED G
Sbjct: 4 NQIGLAPMADYTDYPFREICRRFGAKFTFTEMISVDSIIRENEKVEKMLPQ-KGEDNIGV 62
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ GN + A+ +Q +ID+N CP++ + KKG G+ ++ L V
Sbjct: 63 QLFGNETTKFIEAAKSIQHLAS--WIDINAACPVNKVVKKGSGAALLKNPKLLGDIVFNL 120
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
K + +P VK+R G D+ + + GA I VHGR+R Y+ ++ E ++
Sbjct: 121 KKSIDLPVGVKVRLG--YDQINIEEVAETVEKAGADYIIVHGRTRSQMYSGIANREILKK 178
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDIS 484
+A P+ +GD+FS +D ++ + V++ RGA+ PWIF + D
Sbjct: 179 -LKAKITIPLGASGDVFSKKD-IDDYLLNYGADFVLVARGAIGNPWIFTKNNYNPTID-- 234
Query: 485 SKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLS 522
+R + ++ +E +GS+ V+ R+ L+++ S
Sbjct: 235 --ERIDTCLEHLKLMIEFYGSEVYAVKKFRKVLMKYFS 270
>UniRef50_A6PPM6 Cluster: Dihydrouridine synthase, DuS; n=1;
Victivallis vadensis ATCC BAA-548|Rep: Dihydrouridine
synthase, DuS - Victivallis vadensis ATCC BAA-548
Length = 343
Score = 115 bits (276), Expect = 4e-24
Identities = 75/278 (26%), Positives = 131/278 (47%), Gaps = 4/278 (1%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
N L ++PL+ +LP+RR + G EM SL ++ +++R E+ G
Sbjct: 16 NALLMAPLSGFTDLPYRRAARAGGCRFAFTEMVDVASLTYARERSAGMLRRGPEEEFLGV 75
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G + I + A ++ E E +D N+GCP+ + KKG G+ + L A
Sbjct: 76 QLVGADHEFIRRAADVVNEY-EFSVVDFNLGCPVPKVAKKGAGAELGRHLDAALACFAII 134
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
++ P T K+R +D T + ++ GA ITVHGR +EA Y+ ++ I
Sbjct: 135 AERSRHPVTAKIRIVDAEDPAPTLALAKGLAELGAQAITVHGRIKEAFYSGPVNFGMIRA 194
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDIS 484
+A V NG + Y E+R+ VM+ RGA+ PW+FNE+ +
Sbjct: 195 VREALPGVQVIANGGVTGRVKYQEIRR-ETGCSLVMLARGAMGNPWLFNELSLGDAYVPP 253
Query: 485 SKDR-FEILKKYSNYGLEHWGSDTQGVESTRRFLLEWL 521
D F +++++ +E +G ++ + R+ L ++L
Sbjct: 254 DIDEWFGVIREHVEGMIELYGEES-AMRMARKILHDYL 290
>UniRef50_Q9CLW3 Cluster: tRNA-dihydrouridine synthase B; n=17;
Pasteurellaceae|Rep: tRNA-dihydrouridine synthase B -
Pasteurella multocida
Length = 332
Score = 115 bits (276), Expect = 4e-24
Identities = 64/228 (28%), Positives = 115/228 (50%), Gaps = 3/228 (1%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
N+++L+P+ + + PFRRIC +GA +T EM + ++ + H+ +
Sbjct: 10 NRIFLAPMAGITDQPFRRICTHYGAGLTFSEMMSTNPQVWHTEKSKLRLAHHQEAGINAV 69
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
QI G +P + K AQ+ E + ID+N+GCP + +K GS ++ ++ +
Sbjct: 70 QIAGCDPDEMAKAAQINVEYGA-EIIDINMGCPAKKVNRKMAGSALLQYPDLVKQILNKV 128
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
K +++P T+K+RTG +D + I G +T+HGR+R + ++++ I+
Sbjct: 129 VKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRTRSCMFEGEAEYDNIKA 188
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
+ + P+ NGDI S E + +MIGRG+L PW+F
Sbjct: 189 VKEQLS-IPIIANGDITSAEKAKYVLDYT-NADAIMIGRGSLGNPWLF 234
>UniRef50_A0LJ96 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Syntrophobacter fumaroxidans MPOB|Rep: Putative
TIM-barrel protein, nifR3 family - Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB)
Length = 352
Score = 113 bits (273), Expect = 9e-24
Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 6/234 (2%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKR-HETEDLFGAQ 305
L L+P+ V + +R + +FGA + EM + L++ + L ++ H Q
Sbjct: 24 LVLAPMAGVTDSAYRALMADFGAAMVTTEMVSIQGLVRNQRATLDLCRQQHPVGVPLAVQ 83
Query: 306 ICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCAS 365
+ G +P ++ + A+L+++ ID+N GCP+ + ++G G+ ++ L V
Sbjct: 84 VFGRDPAVMAEAARLVEQGGAA-LIDINAGCPVRKVVRQGAGAILLKDPDRLAAMVEAVK 142
Query: 366 KLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETC 425
+ +S+P TVK+R G + ++ + G ITVHGR+ Y+ +DW I
Sbjct: 143 RAVSVPVTVKIRVGWDNAANGVAGLARQLVSAGVDAITVHGRTAAQMYSGRADWSRIAE- 201
Query: 426 AQAATPCPVYGNGDIFSYEDYVEMRKIAPT-VKGVMIGRGALIKPWIFNEIKEQ 478
+AA PV GNGD+ S E + R I T GVMIGR +L PW+F I +
Sbjct: 202 VKAAVAVPVIGNGDVTSPE--LAERMIHETGCDGVMIGRASLGNPWLFAVISRR 253
>UniRef50_Q2RM54 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Moorella thermoacetica ATCC 39073|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Moorella thermoacetica (strain ATCC 39073)
Length = 334
Score = 113 bits (272), Expect = 1e-23
Identities = 74/232 (31%), Positives = 108/232 (46%), Gaps = 6/232 (2%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQI 306
L ++P+ + FR + +E GA +T EM + L+ K AL+ Q+
Sbjct: 16 LIMAPMAGYTDRVFRLLAREAGAALTYTEMISAQGLIYNNKNTHALLDLKGEPGPVAVQL 75
Query: 307 CGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASK 366
G P I+ ++ IDLN+GCP I K G GS +M LP V +
Sbjct: 76 FGREPEIMAAATRIAVA-AGAAIIDLNMGCPTPKIVKNGEGSALMRDLPRAAAIVAAMVR 134
Query: 367 LLS-IPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETC 425
+P TVKMR G +D + GA+ + +HGR+R Y+ +DW Y
Sbjct: 135 AAGPVPVTVKMRLGWDEDSINVVEAARAVVYAGAAAVAIHGRTRSQFYSGRADWSYFRR- 193
Query: 426 AQAATPCPVYGNGDIFSYEDYVEMRKIAPT-VKGVMIGRGALIKPWIFNEIK 476
+ A PV GNGD+ + D V M +A T GVM+GRGA+ PW+ I+
Sbjct: 194 VKEAVDVPVIGNGDVRTARDAVTM--LAETGCDGVMVGRGAVGNPWLLTAIR 243
>UniRef50_A6NW05 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 307
Score = 113 bits (272), Expect = 1e-23
Identities = 72/226 (31%), Positives = 109/226 (48%), Gaps = 9/226 (3%)
Query: 255 VGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYII 314
V ++ FR IC+E GA T EM ++L K+ L+K E E AQI G++ +
Sbjct: 4 VTDMAFRTICRELGAGYTITEMVSAKALCYQDKKSIPLLKLGEGEHPCAAQIFGSDEKCM 63
Query: 315 TKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLL----SI 370
+ A + E + D ID+N+GCP+ + G GSG+M ++ +VR A ++
Sbjct: 64 EEAAAIAGEVSGADIIDINMGCPVPKVANSGDGSGLMR---DVDKAVRVAEAVVRGAGER 120
Query: 371 PFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAAT 430
P TVK R G + M G S + VHGR+R Y +++W+YI QA +
Sbjct: 121 PVTVKFRLGWDKGSINCVEFAKAMEAAGVSAVAVHGRTRTQMYAGTANWDYIREVKQAVS 180
Query: 431 PCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
PV NGD+F + + MIGRG PW+F + +
Sbjct: 181 -IPVIANGDVFDGPAAAHILRYT-GADMAMIGRGCFGNPWVFQQAR 224
>UniRef50_Q3E0H8 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=5; Chloroflexi (class)|Rep: Dihydrouridine
synthase TIM-barrel protein nifR3 - Chloroflexus
aurantiacus J-10-fl
Length = 407
Score = 113 bits (271), Expect = 2e-23
Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 6/233 (2%)
Query: 247 LYLSPLTTVGNLPFRR-ICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQ 305
+ L+P+ V + FRR I + G + EM S+ + L+ E Q
Sbjct: 85 IILAPMAGVTDSIFRRMILRLGGCGLVSTEMTNAASVSPKALRRHRLLDYLPEERPLTMQ 144
Query: 306 ICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCAS 365
I GN+P ++ A+++ E D ID+N GCP + G GS ++ LP +E +R
Sbjct: 145 ISGNDPDLVANAARVV-EQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKMERLLRAVR 203
Query: 366 KLLSIPFTVKMRTGVYQDKKITHTIVPKMSN-WGASLITVHGRSREARYTKSSDWEYIET 424
+ + IP T+K R G + ++ + K + G S + +H R+RE Y +DW +
Sbjct: 204 EAVQIPVTLKFRAG-WDEQSLNFIEAGKRAEAAGVSALALHPRTREQGYKGQADWSRVAA 262
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
QA + PV G+GD+ S D + +R GVMIGRGA+ PWIF +I +
Sbjct: 263 LKQAVS-IPVIGSGDVTSAHDAL-IRLRDSGADGVMIGRGAMANPWIFRQIAD 313
>UniRef50_Q0B0N8 Cluster: Putative TIM-barrel protein, NifR3 family;
n=2; Clostridiales|Rep: Putative TIM-barrel protein,
NifR3 family - Syntrophomonas wolfei subsp. wolfei
(strain Goettingen)
Length = 318
Score = 113 bits (271), Expect = 2e-23
Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 3/233 (1%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
N++ +P+ V + +R + ++FG + C EM + L+ G + + +
Sbjct: 11 NRVCAAPMAGVSDKAYRVLARDFGCGLVCSEMVSDKGLVYGQGRTSKIADSSGEKRPVAV 70
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
QI G+ + A++++E D ID+N+GCP I K G G+ +M + VR
Sbjct: 71 QIFGSEAESMATAARIVEE-MGADIIDINMGCPTPKIVKNGEGAALMLDITKSRGIVREV 129
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
+++ +P TVKMR G ++ + K+ G + I +H RSR+ ++ S+DW I+
Sbjct: 130 LRVVKVPVTVKMRKGWDENSINCLELAQKLEEEGVAAICLHPRSRQQFFSGSADWNLIKE 189
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
+ PV GNGDI+S +D M VMIGR AL P+IF E E
Sbjct: 190 -MKKELKIPVIGNGDIWSADDAQRMIDFT-GCDAVMIGRAALGNPFIFRETFE 240
>UniRef50_Q489F6 Cluster: NifR3/Smm1 family protein; n=2;
Proteobacteria|Rep: NifR3/Smm1 family protein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 338
Score = 112 bits (270), Expect = 2e-23
Identities = 68/236 (28%), Positives = 118/236 (50%), Gaps = 3/236 (1%)
Query: 240 TIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETE 299
T N+++ L+P+ + + PFR++C + GA + EM + ++ + +
Sbjct: 5 TYQLNSQVMLAPMAGITDQPFRQLCCQLGAGLAVSEMLSSNPKVWNTEKSKLRMLHGDAA 64
Query: 300 DLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALET 359
+ QI G+ P + A++ +N ID+N+GCP + KK GS ++ +E
Sbjct: 65 GIRSVQIAGSCPDELAFAAKVNADNGA-QIIDINMGCPAKKVNKKLAGSALLREPAQVER 123
Query: 360 SVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDW 419
V+ + IP T+K+RTG +D + I N G + + VHGR+R Y ++++
Sbjct: 124 IVQSVVNAVDIPVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAVHGRTRNDFYKGNAEY 183
Query: 420 EYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
+ I+ + A PV NGDI S E +++ +M+GRGA +PWIF EI
Sbjct: 184 DTIK-AIKLAISIPVVANGDITSPEKALQVLD-HTGADAIMVGRGAQGRPWIFREI 237
>UniRef50_A6BZR9 Cluster: Predicted TIM-barrel enzyme, possibly
dehydrogenase, nifR3 family protein; n=1; Planctomyces
maris DSM 8797|Rep: Predicted TIM-barrel enzyme,
possibly dehydrogenase, nifR3 family protein -
Planctomyces maris DSM 8797
Length = 355
Score = 112 bits (270), Expect = 2e-23
Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 3/234 (1%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCG-EMALCESLLKGLKQEWALVKRHETEDLFG 303
++ +L+PL FR +E G C ++ L LL G ++ AL+ +
Sbjct: 23 SRYFLAPLAGYTQHAFRVAIRELGGVGLCTTDLVLASHLLSGSRKSKALLTTSPADRPLT 82
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC 363
QI G + A+ L+++ +DLN+GCP+ I GGG+ +M A V
Sbjct: 83 IQIFGGITAELVAAARWLEQHGYAA-VDLNMGCPMAKINGNGGGARIMCAPDAACQLVAE 141
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIE 423
+SIP TVKMR G +D + + G + ITVHGR+R + + D + I
Sbjct: 142 VVDAVSIPVTVKMRLGWDRDSITAPLLAREFEQAGVAAITVHGRTRNQGFGGTVDLQGIR 201
Query: 424 TCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
+A PV GNGD+ + ED MR+ + V IGRGA++ PWIF +I +
Sbjct: 202 QTVEAVQQIPVIGNGDVCTVEDAFRMRE-QTGCEAVSIGRGAMLDPWIFRKISQ 254
>UniRef50_A6DCX2 Cluster: tRNA-dihydrouridine synthase B; n=1;
Caminibacter mediatlanticus TB-2|Rep:
tRNA-dihydrouridine synthase B - Caminibacter
mediatlanticus TB-2
Length = 311
Score = 112 bits (269), Expect = 3e-23
Identities = 72/259 (27%), Positives = 128/259 (49%), Gaps = 8/259 (3%)
Query: 248 YLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQIC 307
+L+PL +LPFR + KEFG D+T EM ++ ++ ++++ E + QI
Sbjct: 14 FLAPLAGYTDLPFRSVVKEFGCDMTFSEMINANAIAFNNEKTKKMMQKSSKETPYFIQIA 73
Query: 308 GNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMM--HRLPALETSVRCAS 365
NN K +++ E +D ID+N+GCP++ + G G ++ L+ V
Sbjct: 74 ANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLKDENKEKLKEIVSAII 133
Query: 366 KLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETC 425
K + KMR G ++ + + + G +TVHGR+ + Y +++++ I+
Sbjct: 134 KTSKKIVSAKMRLG--YNEVVAVDRAKMLEDLGIKFLTVHGRTVKQMYKGNANYKEIKKV 191
Query: 426 AQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISS 485
+ PV NGDI Y+ E+ + GV IGRG + KPWIF E+K+Q +I+
Sbjct: 192 VKEVN-IPVIANGDITDYKKAKEVLEYT-EANGVAIGRGVIGKPWIFLEMKQQ--GEITP 247
Query: 486 KDRFEILKKYSNYGLEHWG 504
+ E++ + +E +G
Sbjct: 248 YQKKEVILTHFKAMIEWYG 266
>UniRef50_Q8PX79 Cluster: NifR3-like protein; n=5; Archaea|Rep:
NifR3-like protein - Methanosarcina mazei
(Methanosarcina frisia)
Length = 323
Score = 111 bits (268), Expect = 4e-23
Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 4/233 (1%)
Query: 244 NNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFG 303
+ L L+P+ V NL FR +C+ +GAD+T EM ++LL ++ + E + FG
Sbjct: 14 SGNLLLAPMADVTNLAFRLLCRRYGADLTYTEMINVDALLNESRKSFIKGLSSEEDRPFG 73
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC 363
Q+ G P + + A ++E + ID+N+GCP I G GS +++ + + +
Sbjct: 74 VQLVGGCPDKLKRAALFIEEEYRPEIIDVNMGCPARCITGAGCGSALLNSPELVYSIILE 133
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIE 423
++ L P + K+R ++K T I + GAS +TVHGR+ Y+ +S+ E I
Sbjct: 134 LTESLDTPVSAKIRLLGREEK--TLEIARLIEKAGASAVTVHGRTAAQMYSGNSNLEGIR 191
Query: 424 TCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
+ PV NGD+ E+ E G+MIGR A+ P+IF +I+
Sbjct: 192 AVKNELS-IPVIANGDV-KDEESAERTLELTGCDGLMIGRAAMGNPFIFKKIR 242
>UniRef50_Q6M9N8 Cluster: Putative uncharacterized protein; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative uncharacterized protein - Protochlamydia
amoebophila (strain UWE25)
Length = 297
Score = 111 bits (267), Expect = 5e-23
Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 4/174 (2%)
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
G Q+CG+ P I + A++++E D +DLN GCP+D I K G GSG++ + P L +
Sbjct: 28 GGQLCGSKPSIAGQAAKIIEE-LGFDIVDLNCGCPVDKITKDGSGSGLL-KTPELIGEIV 85
Query: 363 CAS-KLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEY 421
C + IP TVK+R G + + IV + GA I +HGR+R+ Y ++WEY
Sbjct: 86 CNMVSAVKIPVTVKIRAGWDEQQIQVENIVQIVEQAGAQAICIHGRTRQQGYRGPANWEY 145
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
I+ AA + GNGD+ +M V++ RG L +PWI +I
Sbjct: 146 IKRGKLAAKSIKIIGNGDVLDGPSAAKM-FCETGCDAVLVARGTLGQPWIVQDI 198
>UniRef50_Q6SFW7 Cluster: NifR3/Smm1 family protein; n=1; uncultured
bacterium 578|Rep: NifR3/Smm1 family protein -
uncultured bacterium 578
Length = 322
Score = 111 bits (267), Expect = 5e-23
Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 5/233 (2%)
Query: 244 NNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCES-LLKGLKQEWALVKRHETEDLF 302
++K+ L+P+ + PFR IC+E GA +T EM + + LL K + L R E +
Sbjct: 9 SSKVLLAPMAGTSDKPFRMICREQGAALTTSEMVVMQKHLLNTNKSKHRLDFRSEQSPI- 67
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
QI G+ + + A+ E D ID+N+GCP + K GS +M +E ++
Sbjct: 68 SIQIAGSESQELAESAKQALE-FGADIIDINMGCPAKKVCNKAAGSALMKNEKLVEDIIK 126
Query: 363 CASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI 422
++IP T+KMRTG ++ K TI + G ++ +HGR+R +Y ++++ +
Sbjct: 127 AVVNAVNIPVTLKMRTGWNEENKNAPTIAKIAEDNGIKMLAIHGRTRAQKYNGDAEYDTV 186
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
+ + PV NGDI S + ++ VM+GR PW+ +I
Sbjct: 187 KK-IKGIVSIPVVANGDITSAQKAKKVLDYT-GADAVMLGRATQGNPWLVGQI 237
>UniRef50_Q6MAU6 Cluster: Putative uncharacterized protein yohI;
n=1; Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative uncharacterized protein yohI - Protochlamydia
amoebophila (strain UWE25)
Length = 326
Score = 109 bits (261), Expect = 3e-22
Identities = 83/268 (30%), Positives = 132/268 (49%), Gaps = 23/268 (8%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGA-DVTCGEMALCESLLKGLKQEWALVKRHETEDLF--- 302
L L+P+ VG+ FR+ G D C E S +L R+E + F
Sbjct: 14 LILAPMEGVGDRSFRKAMASVGGFDEACTEFMRVPSNA----HVPSLANRYEANETFPIP 69
Query: 303 -GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSV 361
AQ+ G++P ++ ++A+ + E IDLN GCP + + +G GS ++ L
Sbjct: 70 QAAQLMGSDPELMAEMARAV-ERRGAQRIDLNCGCPSNTVTGRGAGSSLLKEPDHLYKVA 128
Query: 362 RCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEY 421
+ + +++P T K+R+G + D + H + G +T+H R++ Y + WE
Sbjct: 129 KSMVEAVNVPVTAKLRSG-FTDTSLFHDNLLAAQASGIKYLTLHPRTKVDGYGPPAKWEL 187
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE---- 477
I A+ PV GNGDI + +D + M K G+MIGRG++I P+IF+EIK
Sbjct: 188 IAQ-AKQLLKIPVVGNGDILTVQDALNMLK-QTKCDGLMIGRGSVINPFIFHEIKSHFSA 245
Query: 478 ---QKIWDISSK--DRF-EILKKYSNYG 499
+K WD+ S+ D F E LK+ S G
Sbjct: 246 QPFEKKWDVFSRYIDVFTEDLKEMSVKG 273
>UniRef50_Q251N6 Cluster: Putative uncharacterized protein; n=2;
Desulfitobacterium hafniense|Rep: Putative
uncharacterized protein - Desulfitobacterium hafniense
(strain Y51)
Length = 326
Score = 107 bits (258), Expect = 6e-22
Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 3/228 (1%)
Query: 248 YLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQIC 307
+L+P+ V + FR + G EM ++L + ++ Q+
Sbjct: 18 FLAPMAGVTDKAFRETVRSVGGLHVWTEMISDKALTYMNSRTLEMLDLSGEASPRIVQLF 77
Query: 308 GNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKL 367
G+ P ++ K A L E + + ID+N+GCP I K G GS ++ LP + K
Sbjct: 78 GSEPEVMAKAAALAVER-DAEIIDINMGCPTPKIVKNGEGSALLQDLPLAQRIAEAVVKA 136
Query: 368 LSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQ 427
+ +P TVKMR G ++ + + ++ G +++VHGR+RE Y +++ + I+ +
Sbjct: 137 VEVPVTVKMRLGWTAERIVAPELAKRVEAVGVQMVSVHGRTREQFYAGTANRDGIKK-VK 195
Query: 428 AATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
PV NGDIFS ++ + + A GVM+GRG+L PW+ +I
Sbjct: 196 GGVSIPVIANGDIFSPQEAKTVLE-ATGCDGVMVGRGSLGNPWLIPQI 242
>UniRef50_Q31II6 Cluster: Dihydrouridine synthase; n=1;
Thiomicrospira crunogena XCL-2|Rep: Dihydrouridine
synthase - Thiomicrospira crunogena (strain XCL-2)
Length = 320
Score = 107 bits (257), Expect = 8e-22
Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 5/228 (2%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLK-GLKQEWALVKRHETEDLFGAQIC 307
L+P+ + + +R IC+E GA EM + L+ K + ET Q+
Sbjct: 14 LAPMAGITDRVYRDICRESGASYAVSEMVASKKQLRESAKSSTRHADKTETSPRI-VQLL 72
Query: 308 GNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKL 367
G +P + A L Q++ D IDLN+GCP + GS +M + + + ++
Sbjct: 73 GTHPEELVDAA-LWQQSQGADIIDLNMGCPAKKVCDVAAGSALMGQPERVADIFKSLTEA 131
Query: 368 LSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQ 427
+ +P TVK+RTG D I G IT+HGR+R ++ ++++ I+ Q
Sbjct: 132 IDLPVTVKIRTGTDVDNINAVEIAKLAQELGLKAITIHGRTRADKFNGQAEYDTIKAVKQ 191
Query: 428 AATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
A PV NGDI S ++ + K + G+MIGR A PWIF EI
Sbjct: 192 -AVDIPVIANGDICSPKEAQFVLKYTGS-DGIMIGRAAQGYPWIFREI 237
>UniRef50_A4YUQ6 Cluster: Putative tRNA-dihydrouridine synthase;
n=4; Rhizobiales|Rep: Putative tRNA-dihydrouridine
synthase - Bradyrhizobium sp. (strain ORS278)
Length = 317
Score = 107 bits (257), Expect = 8e-22
Identities = 71/226 (31%), Positives = 107/226 (47%), Gaps = 8/226 (3%)
Query: 252 LTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDL--FGAQICGN 309
++ + + PFRR+ E GA + EM + L++G W R E + Q+ G
Sbjct: 1 MSGITDAPFRRLAAELGAGLVVSEMTASDDLVRG---RWISRLRCEAGGIGPHVVQLAGC 57
Query: 310 NPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLS 369
+ + + A++ + D ID+N+GCP + GS +M L T + + +
Sbjct: 58 EAHWMAEGAKVAADGGA-DIIDINMGCPARHVTGGQSGSALMRDLDHALTLIEATVEAVD 116
Query: 370 IPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAA 429
+P T+KMR G + + + G LITVHGR+R+ Y +DW + Q A
Sbjct: 117 VPVTLKMRLGWDERSLNAPELARRAEAAGVQLITVHGRTRQQFYKGEADWSAVRAVKQ-A 175
Query: 430 TPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
PV NGDI SYED E A VMIGRGA +PW+ +I
Sbjct: 176 VDLPVVVNGDITSYEDAREALD-ASGADAVMIGRGAQGQPWLPGQI 220
>UniRef50_Q0G7A4 Cluster: Nitrogen regulation protein nifr3; n=2;
Aurantimonadaceae|Rep: Nitrogen regulation protein nifr3
- Fulvimarina pelagi HTCC2506
Length = 344
Score = 107 bits (256), Expect = 1e-21
Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 13/278 (4%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
N+++ +PL+ + ++PFRR+ + FGA + EM +KG +E L + +
Sbjct: 18 NRVFAAPLSGISDVPFRRLSRRFGAGLVVSEMVASGEFVKG-AEEGKLRALRDGPGVHTV 76
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHR----LPALETS 360
Q+ G +P + + A+ L + D ID+N+GCP + GS +M +E +
Sbjct: 77 QLAGRDPIWMEEAARRLADE-GADLIDINMGCPAKKVVGGLSGSALMREPDLAFSIVEAT 135
Query: 361 VRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWE 420
VR A + P ++KMR G +D I + G ++ITVHGR+R Y ++DW
Sbjct: 136 VRGAG---ATPVSLKMRLGWCRDSMNAAEIAVRAEAAGVTMITVHGRTRAEFYEGTADWR 192
Query: 421 YIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKI 480
I + + PV NGD+ + + + A VM GRG +PW + +
Sbjct: 193 AI-CSVKRSVGVPVVANGDL-TEANQLSAILAASGADAVMTGRGMQGRPWFAGLLAGRVT 250
Query: 481 WD-ISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFL 517
+ +S+ D + + + L H+G T GV R+ L
Sbjct: 251 MERLSAIDAADFVGGHYEAMLSHYGV-TTGVRHARKHL 287
>UniRef50_A7HK00 Cluster: Dihydrouridine synthase DuS; n=4;
Thermotogaceae|Rep: Dihydrouridine synthase DuS -
Fervidobacterium nodosum Rt17-B1
Length = 322
Score = 107 bits (256), Expect = 1e-21
Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 15/231 (6%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICG 308
L+P+ V + PFR++C + GA EM +S++ +K R + +D G Q+ G
Sbjct: 13 LAPMAGVTDYPFRKLCLQHGAYFAFTEMISAKSVIINVKINEIYFPRQDEKDRVGVQLFG 72
Query: 309 NNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLL 368
++ +++ A ++QE ++DLN GCP+ + KKG GS ++ L VR +L
Sbjct: 73 SDYAELSEAAAIVQEKGL--WVDLNAGCPVSKVIKKGAGSALLKDLGEFRKVVRAMRSVL 130
Query: 369 SIPFTVKMRTGVYQD--KKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCA 426
FTVK R G +D +KI + ++ + + VHGR+ + Y+ + W+
Sbjct: 131 K-RFTVKTRIGWEKDEFEKIYNILLEE----NVDAVFVHGRTAKQMYSGKATWKIYNPGF 185
Query: 427 QAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
P+Y +GDI++ ED ++ GV++ RG++ PWIF+EI E
Sbjct: 186 -----VPLYISGDIYTKED-IKNAMEQSGATGVIVARGSIGNPWIFSEIGE 230
>UniRef50_O53835 Cluster: Probable tRNA-dihydrouridine synthase;
n=35; Actinobacteria (class)|Rep: Probable
tRNA-dihydrouridine synthase - Mycobacterium
tuberculosis
Length = 389
Score = 107 bits (256), Expect = 1e-21
Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 15/247 (6%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADV--TCGEMALCESLLKGLKQEWALVKRHET 298
I+ + + L+P+ V N+ FR +C++ T + +CE + E V H T
Sbjct: 18 IELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMT 77
Query: 299 -----EDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGM--M 351
E Q+ +P A+++ D ID+N GCP+ + K+GGG+ +
Sbjct: 78 TFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFK 137
Query: 352 HRL--PALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNW-GASLITVHGRS 408
RL + +VR A++ IP TVK R G+ D TH +++ GA+ + +H R+
Sbjct: 138 RRLFGQIVAAAVR-ATEGTDIPVTVKFRIGI-DDAHHTHLDAGRIAEAEGAAAVALHART 195
Query: 409 REARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIK 468
RY+ ++DWE I Q PV GNGDI+ D + M GV+IGRG L +
Sbjct: 196 AAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMS-TTGCDGVVIGRGCLGR 254
Query: 469 PWIFNEI 475
PW+F E+
Sbjct: 255 PWLFAEL 261
>UniRef50_Q0FAI7 Cluster: tRNA-dihydrouridine synthase, putative;
n=1; alpha proteobacterium HTCC2255|Rep:
tRNA-dihydrouridine synthase, putative - alpha
proteobacterium HTCC2255
Length = 324
Score = 106 bits (255), Expect = 1e-21
Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 5/231 (2%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICG 308
LSPL + +LP+R + FGA + EM +++ K A + + QI G
Sbjct: 13 LSPLAGITDLPYRNLVSSFGAGLVVSEMVASHEIMQKGKDARARAELGFNVEGTSVQIAG 72
Query: 309 NNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETS-VRCASKL 367
+ + +++ A+L++ N ID+N+GCP + GS +M R P L +
Sbjct: 73 RDAFWMSECAKLIEGN-GAKIIDINMGCPAKSVVNGASGSALM-RTPDLALKLIEAVVNA 130
Query: 368 LSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQ 427
+ IP T+K R G + + G +IT+HGR+R Y +DW I +
Sbjct: 131 VDIPVTLKTRLGWDHNDLNAADLSSSAEKIGIQMITIHGRTRCQFYKGDADWRKIREVKE 190
Query: 428 AATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQ 478
A PV NGDI ++ GVMIGRGA KPW+ ++I +
Sbjct: 191 AVN-IPVIANGDIID-TPTAKLAMKQSKADGVMIGRGAQGKPWLLSQIASE 239
>UniRef50_Q8YAB9 Cluster: Lmo0227 protein; n=55; Bacteria|Rep:
Lmo0227 protein - Listeria monocytogenes
Length = 331
Score = 106 bits (254), Expect = 2e-21
Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 3/237 (1%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETED 300
++ N++ ++P+ + N FR KEFGA + C EM + + + ++ E E
Sbjct: 7 VEIKNQVVVAPMAGISNSAFRLTVKEFGAGLVCCEMISDKGIAYRNAKTLDMLYIDEKEK 66
Query: 301 LFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETS 360
QI G + + A+ + ENT D ID+N+GCP++ I K G+ + +
Sbjct: 67 PLSLQIFGGEKETLVEAAKFVAENTTADIIDINMGCPVNKIIKCEAGAKWLLDPNKVYDM 126
Query: 361 VRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWE 420
V + P TVKMR G ++ GA+ + +HGR+R Y S++W+
Sbjct: 127 VAAVVDAVDKPVTVKMRIGWDEEHVFAIENALAAERAGAAAVAMHGRTRVQMYEGSANWD 186
Query: 421 YIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPW-IFNEIK 476
+ + P NGD+ + ED + + GVMIGR AL PW I+ +K
Sbjct: 187 VLRD-VKRELKIPFMANGDVRTPEDAKRILE-HTGADGVMIGRAALGNPWMIYRTVK 241
>UniRef50_Q14SX5 Cluster: Putative dihydrouridine synthase; n=1;
Ruminococcus flavefaciens|Rep: Putative dihydrouridine
synthase - Ruminococcus flavefaciens
Length = 332
Score = 106 bits (254), Expect = 2e-21
Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 6/229 (2%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICG 308
L+P+ V + +R +CK +GA EM + + ++ L E E Q+ G
Sbjct: 18 LAPMAGVADRAYRLMCKRYGAAYVVSEMVSAKGICYSDRKTAELCTVTEEERPMAVQLFG 77
Query: 309 NNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLL 368
+ P + + +++ + D ID+N+GCP+ + G GS +M + PAL ++ A+
Sbjct: 78 SEPDFMAEAVKIVLDYRP-DIIDINMGCPVPKVVGTGAGSALM-KDPALAAAITEAAVKA 135
Query: 369 S--IPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCA 426
+ P TVK+R+G D + + G + I VHGR+R+ Y+ SD I+
Sbjct: 136 AGDTPVTVKIRSGWSSDSINAPEMARALEASGTAAIAVHGRTRDMFYSGQSDMNVIKAVK 195
Query: 427 QAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
+A + PV GNGDI E EM VMIGRG+ P+IF EI
Sbjct: 196 EAVS-VPVIGNGDITDAESCAEMYG-RTGCDLVMIGRGSYGNPFIFREI 242
>UniRef50_Q9RRP8 Cluster: NifR3 protein; n=2; Deinococcus|Rep: NifR3
protein - Deinococcus radiodurans
Length = 406
Score = 105 bits (252), Expect = 3e-21
Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 6/228 (2%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQE-WALVKRHETEDLFGAQIC 307
L+P+ + P R++ E GA T EM L+ G +QE +L + + E Q+
Sbjct: 96 LAPMAGYSDAPMRQLAAEQGALWTVSEMISARGLVLGSEQESLSLGRPYPGEQGRAVQLF 155
Query: 308 GNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKL 367
G +P ++ + IDLN+GCP+ + KGG + A E VR +
Sbjct: 156 GADPDVLADAVGKAEAWFAPAAIDLNLGCPVPKVRGKGGACLLQTPEVAYEL-VRAMRQA 214
Query: 368 LSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQ 427
+ + K+R G +++ + I + GA+++TVHGR+ RYT ++DW+ I AQ
Sbjct: 215 TGLDVSAKIRLGWDENRSVE--IAQGLEAAGAAVVTVHGRTSAQRYTGNADWDAIGRVAQ 272
Query: 428 AATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
A PV G+GD+ S E R V VMIGRGA+ PW+F I
Sbjct: 273 AVR-IPVIGSGDVLSPVQARE-RMQQSGVAAVMIGRGAVGNPWMFRAI 318
>UniRef50_Q3AZ67 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=20; Cyanobacteria|Rep: Dihydrouridine synthase
TIM-barrel protein nifR3 - Synechococcus sp. (strain
CC9902)
Length = 356
Score = 105 bits (252), Expect = 3e-21
Identities = 75/235 (31%), Positives = 115/235 (48%), Gaps = 7/235 (2%)
Query: 244 NNKLYLSPLTTVGNLPFRRICKEFGAD-VTCGEMALCESLLKGLKQEWALVKRHETEDLF 302
++++ SPL V + FR + + + D + EM SL G + E
Sbjct: 36 HSRVLQSPLAGVTDKIFRGLVRRWSRDSLLFTEMVNATSLELG-HGYGKMDDLKAEEGPI 94
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSV- 361
Q+ + P+ + A+ ++ ID+N+GCP+ I KKGGGSG++ R P L T +
Sbjct: 95 AVQLFDHRPHAMAHAARRAEQAGAF-LIDINMGCPVRKIAKKGGGSGLI-RDPNLATQIL 152
Query: 362 RCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEY 421
+SIP TVK R G T ++ N GA ++T+HGR+RE + ++W
Sbjct: 153 EAVVDAVSIPVTVKTRLGWCGSSSDPITWCRQLQNAGAQMLTLHGRTREQGFKGQANWNA 212
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
I QA T PV NGDI S D + +I GVM+GRG + PW+ +I+
Sbjct: 213 IAEVKQALT-IPVIANGDINSPTDALRCLEIT-GADGVMVGRGTMGSPWLVGQIE 265
>UniRef50_Q5FTP7 Cluster: Nitrogen assimilation regulatory protein
NifR3; n=3; Acetobacteraceae|Rep: Nitrogen assimilation
regulatory protein NifR3 - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 371
Score = 104 bits (250), Expect = 6e-21
Identities = 72/280 (25%), Positives = 133/280 (47%), Gaps = 12/280 (4%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICG 308
L+PL+ V +LPFR++ ++ GA + EM ++++ + + + E Q+ G
Sbjct: 39 LAPLSGVTDLPFRQLARDLGAGLVVSEMIASWAMIRENENTMRMARMAERGPN-AVQLAG 97
Query: 309 NNPYIITKVAQLLQENTELDFIDLNIGCPIDLI-YKKGGGSGMMHRLPALETSVRCASKL 367
+P + + A++ + + ID+N GCP+ + + GS +M + ++
Sbjct: 98 CDPKAMAQAAKISVDGGA-NLIDINFGCPVKKVAIGQMAGSALMRDEVLAGKLLEATARA 156
Query: 368 LSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQ 427
+++P T+KMR G + + G L+TVHGR+R+ Y ++DW +++T
Sbjct: 157 VNVPVTLKMRMGWDHNSLNAPRLAKIAEESGIRLVTVHGRTRQMFYNGTADWRFVKTVKD 216
Query: 428 AATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE-----QKIWD 482
A + PV NGDI + D E GVMIGRG +PW ++ + + + D
Sbjct: 217 AVS-LPVIVNGDINTIRDAREALH-QSQADGVMIGRGCYGRPWFTAQVAQSLRTGEDVPD 274
Query: 483 ISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLS 522
EI ++ L+H+G + G+ R+ + W S
Sbjct: 275 PDLATEKEIALRHYRMMLDHFG-ERPGLRLARKH-VSWYS 312
>UniRef50_Q2RTR9 Cluster: Dihydrouridine synthase TIM-barrel protein
nifR3; n=1; Rhodospirillum rubrum ATCC 11170|Rep:
Dihydrouridine synthase TIM-barrel protein nifR3 -
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
Length = 362
Score = 104 bits (250), Expect = 6e-21
Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 7/229 (3%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLK----GLKQEWALVKRHETEDLF 302
+ L+P+ V + PFRR+ ++G ++ EM LL+ G+ F
Sbjct: 14 IMLAPMAGVTDSPFRRLAHDYGCPLSWTEMVASRELLRERARGVDPRLGGGAEAGRAGPF 73
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
Q+ G +P I+ + A+ + E + ID+N+GCP+ + GGS +M LP +
Sbjct: 74 AVQLAGCDPLIMAEAARRV-EGAGAELIDINMGCPVRKVVGGLGGSALMRDLPLAARILE 132
Query: 363 CASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI 422
+++P ++KMR G + + + G S +TVHGR+R Y +DW I
Sbjct: 133 AVVGAVTLPVSLKMRLGWDDASRNAVELARLAESAGISRLTVHGRTRAQMYDGRADWPAI 192
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWI 471
+A + PV NGD+ + + E+ + GVMIGR AL PW+
Sbjct: 193 GLVKRAVS-LPVIANGDVTNLSEAREILAVT-GADGVMIGRAALGAPWL 239
>UniRef50_Q55724 Cluster: Probable tRNA-dihydrouridine synthase 1;
n=15; Cyanobacteria|Rep: Probable tRNA-dihydrouridine
synthase 1 - Synechocystis sp. (strain PCC 6803)
Length = 355
Score = 104 bits (250), Expect = 6e-21
Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 5/243 (2%)
Query: 235 PRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVK 294
P + ++ ++++ SPL+ V +L FRR+ + + + + + L+ +++
Sbjct: 32 PLQIGSLTLHSRVLQSPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEIHHLRTLPQVME 91
Query: 295 RHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRL 354
E+ Q+ P + + AQ +D+N+GCP++ I KKGGGS ++ +
Sbjct: 92 IDPRENPISIQLFDCRPDFMAEAAQKAVAQGAQS-VDINMGCPVNKITKKGGGSSLLRQP 150
Query: 355 PALETSVRCASKLLSIPFTVKMRTGVYQDKKITHT-IVPKMSNWGASLITVHGRSREARY 413
E V+ + +P TVK R G + D +I ++ + GA ++T+HGR+R Y
Sbjct: 151 AVAEAIVKTVVAAVDVPVTVKTRLG-WDDGEINIVEFAQRLQDAGAQMLTLHGRTRAQGY 209
Query: 414 TKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFN 473
+ W++I QA T PV NGDIFS E + + GVM RG+L P++
Sbjct: 210 NGRARWQWIAKVKQALT-IPVIANGDIFSVEAAIACLE-ETGADGVMCSRGSLGYPFLVG 267
Query: 474 EIK 476
EI+
Sbjct: 268 EIE 270
>UniRef50_O83945 Cluster: Probable tRNA-dihydrouridine synthase;
n=2; Treponema|Rep: Probable tRNA-dihydrouridine
synthase - Treponema pallidum
Length = 340
Score = 104 bits (249), Expect = 8e-21
Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 11/240 (4%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQI 306
++ +P+ + FR I E+ A T EM E++++ L++R E + QI
Sbjct: 21 VFFAPVAGYSDSAFRSIAIEWEASFTYTEMVSSEAMVRDSLNTKRLIRRASNETHYAIQI 80
Query: 307 CGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASK 366
G+NP ++ + A+L+ ++ + ID+N GCP+ I K G G+ + L V+ +
Sbjct: 81 FGSNPAVMAETAKLIVDSAQPSCIDINAGCPMPKITKTGAGAALTREPTRLYEVVKAVAD 140
Query: 367 LL-----SIPFTVKMRTGVYQDKKITHTIVPKMS-NWGASLITVHGRSREARYTKSSDWE 420
+ IP TVK+R G +++ +T + + + GA + +H R+ Y ++W+
Sbjct: 141 AVYAQDARIPVTVKIRAG-WEEAHLTWKEAARAAVDAGAQALALHPRTCAQCYAGEANWD 199
Query: 421 YIE---TCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
I CA+ PV+G+GD+ + ED M + GVM RGA+ P+IF + ++
Sbjct: 200 IIADLVQCARGWGEVPVFGSGDLHAPEDARAMLE-HTACAGVMFARGAMGNPFIFRQTRQ 258
>UniRef50_Q00XL7 Cluster: TRNA-dihydrouridine synthase; n=1;
Ostreococcus tauri|Rep: TRNA-dihydrouridine synthase -
Ostreococcus tauri
Length = 295
Score = 103 bits (247), Expect = 1e-20
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 371 PFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAAT 430
P TVK+R G+ T I ++ N GA+ I VHGR++E RYTKS+D++ I
Sbjct: 36 PLTVKIRLGIESSSPATK-IAERLENAGAAAIIVHGRTKEQRYTKSADYDVIRQIVSERA 94
Query: 431 PCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDR 488
PV GNGD+ ++ D + R G+M+GRGALIKPWIF E +E+K W+ +++DR
Sbjct: 95 -IPVIGNGDVLTWYD-AQQRLDYSGCAGIMVGRGALIKPWIFKEFREKKEWEPTAEDR 150
>UniRef50_Q090Q9 Cluster: TRNA-dihydrouridine synthase B; n=2;
Cystobacterineae|Rep: TRNA-dihydrouridine synthase B -
Stigmatella aurantiaca DW4/3-1
Length = 369
Score = 102 bits (245), Expect = 2e-20
Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 3/232 (1%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVK-RHETEDLFG 303
N L+P+ V PFR I ++GA + E+ + L++ ++ ++ E E +
Sbjct: 43 NPYILAPMAGVSERPFRVIAFKWGAALCPTELVSAQGLMRANQRTLKYLRFSPEVERPYS 102
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC 363
QI G P + + A L+ + ID+N+GCP+ + K G GS +M V+
Sbjct: 103 LQIFGGEPEAMAQAA-LVGKAHGAQIIDINMGCPVKKVTKNGAGSALMCEPLRAARIVQA 161
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIE 423
++ +P T K+R+G + + ++ + G + + +H R+R+ Y+ +DW I
Sbjct: 162 IAEATGLPVTCKIRSGWDAHHRNYLQMAGELFSAGCAALAIHPRTRDQGYSGFADWSVIA 221
Query: 424 TCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
+ + GNGD+ + D MR+ VMIGRGAL PWIF E+
Sbjct: 222 DLKRHFPDRTLIGNGDVKTPADARRMRE-TTGCDFVMIGRGALGNPWIFREL 272
>UniRef50_A7BE39 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 411
Score = 102 bits (245), Expect = 2e-20
Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 11/210 (5%)
Query: 275 EMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNI 334
EM +L++ ++ +V+ E + Q+ G NP ++ K A +L E D IDLN
Sbjct: 74 EMVTSRALVEENERTLEMVRPDPAERVRSLQLYGVNPAVMAKAATMLVERDLTDHIDLNF 133
Query: 335 GCPIDLIYKKGGGSGMMHRLPALETSVRCASKLL---------SIPFTVKMRTGVYQDKK 385
GCP+ + KKGGG+ + + V + IP TVK+R G+ + +
Sbjct: 134 GCPVPKVTKKGGGAALPWKRDLFSDLVGAVVRACDEAGERAGREIPVTVKIRIGIDSEHE 193
Query: 386 ITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYED 445
GA+ +T+H R++ Y + W+ I + PV+GNGD+F D
Sbjct: 194 TATDAALNAQKLGAAALTLHARTQNQHYAGHAHWDEIAR-LKDLLDIPVFGNGDVFEAAD 252
Query: 446 YVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
+ M + G+ +GRGA +PWIF +I
Sbjct: 253 ALAMLE-QTGCDGISVGRGAQGRPWIFRDI 281
>UniRef50_Q607L4 Cluster: TIM-barrel protein, yjbN family; n=10;
Proteobacteria|Rep: TIM-barrel protein, yjbN family -
Methylococcus capsulatus
Length = 327
Score = 102 bits (244), Expect = 3e-20
Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 5/233 (2%)
Query: 244 NNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETE-DLF 302
++ + L+P+ V +LPFRR+C++FGA + EM L+ ++ L + H E
Sbjct: 9 SSPVILAPMAGVTDLPFRRLCRQFGAGLAVSEMISASPALQATRKS-RLRQDHRGEPGPI 67
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
QI G +P + + A+ + D ID+N+GCP + GS ++ + +
Sbjct: 68 SVQIVGADPREMAEAARRTVD-LGADIIDINMGCPAKKVCNVAAGSALLRDEKLVANILE 126
Query: 363 CASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI 422
+ + +P T+K+RTG + +I + G +TVHGR+R + ++++ I
Sbjct: 127 AVVQAVPVPVTLKIRTGWDSASRNAVSIGKIAESAGIRALTVHGRTRACGFAGAAEYSTI 186
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
T + A PV NGDI S E + VMIGRGA +PW+ EI
Sbjct: 187 -TEVKKAIGIPVIANGDIDS-PGKAEAVLRSTGADAVMIGRGAWGRPWLLREI 237
>UniRef50_A7CWF1 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Opitutaceae bacterium TAV2|Rep: Putative TIM-barrel
protein, nifR3 family - Opitutaceae bacterium TAV2
Length = 389
Score = 101 bits (241), Expect = 7e-20
Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 9/234 (3%)
Query: 244 NNKLYLSPLTTVGNLPFRRICKEFGA-DVTCGEMALCESLLKGLKQEWALVKRHETEDLF 302
++ L+LSPL NLP R +E G ++ SL++ K LV+ +
Sbjct: 9 SSNLFLSPLAGYTNLPMRLTVRELGGLGWATTDLVNARSLIERSKGAMKLVETAPGDQPL 68
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
Q+ G+ P + A + +E +D+N+GCP+ + GGG+ MM L VR
Sbjct: 69 AIQLFGSVPEEMRDAAVICKE-LGAQSVDVNMGCPVKKVVGIGGGAAMMTELNKTAALVR 127
Query: 363 CASKLLS--IPFTVKMRTGVYQDKKITHTIVPK-MSNWGASLITVHGRSREARYTKSSDW 419
+ + IP T KMR G + D IT + + +++ G + I VHGR+R ++ + +
Sbjct: 128 GMVEAVGNKIPVTAKMRLG-WDDANITAPDLARVLADVGVAAIFVHGRTRAQGFSGTVNL 186
Query: 420 EYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPT-VKGVMIGRGALIKPWIF 472
I +A PV GNGD+ + E M IA T GV +GRGA PWIF
Sbjct: 187 AGIRAVVEAVPGLPVIGNGDVTTPESARHM--IAETGCAGVSVGRGAFYDPWIF 238
>UniRef50_Q5ZRM0 Cluster: Nitrogen regulation protein; n=4;
Legionella pneumophila|Rep: Nitrogen regulation protein
- Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 329
Score = 100 bits (239), Expect = 1e-19
Identities = 72/251 (28%), Positives = 117/251 (46%), Gaps = 13/251 (5%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTC-GEMALCESLLKGLKQEWALVKRHETEDLFG 303
++L PL PFR + + C EM +L + + R TE
Sbjct: 19 HRLIQGPLAGYSCAPFRDLFNIYTPPAYCVSEMCSAIDILHKHSSQSRYIYRAPTEKFLA 78
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMM---HRLPALETS 360
QI GN P+++ + A LQ + D ID+N GCP I KKG GS ++ +L A+ +
Sbjct: 79 YQISGNEPHVLAEAAAKLQ-SLGADLIDINCGCPKSKIRKKGAGSALLEDPQKLIAIISR 137
Query: 361 VRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWE 420
VR A +SIP T+K+R Q+ + T+ ++ + GA + VHGR Y +W+
Sbjct: 138 VRAA---ISIPLTIKIR---IQNNEKDLTLAKQIEDAGAHALIVHGRRWTEDYDIPCNWQ 191
Query: 421 YIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKI 480
I A PV NGDI + + +I+ G MI R KPW++ ++ +
Sbjct: 192 QIANIKNAVN-IPVIVNGDINNIFSLRKALEIS-ACDGFMISRAGTGKPWLYRDLLNLET 249
Query: 481 WDISSKDRFEI 491
D++ ++ ++
Sbjct: 250 NDVAFDEKLKL 260
>UniRef50_A6DPY9 Cluster: Putative uncharacterized protein; n=1;
Lentisphaera araneosa HTCC2155|Rep: Putative
uncharacterized protein - Lentisphaera araneosa HTCC2155
Length = 330
Score = 99 bits (238), Expect = 2e-19
Identities = 80/233 (34%), Positives = 117/233 (50%), Gaps = 16/233 (6%)
Query: 246 KLYLSPLTTVGNLPFR-RICKEFGADVTCGEMALCES---LLKGLKQEWALVKRHETEDL 301
KL L+P+ V + R +I + G D+ C E S ++ LK++ +VK +
Sbjct: 8 KLSLAPMEGVTHPLMRHQIAQHGGLDLLCTEFIRISSHKPSMRSLKKQ--IVKSGDIP-- 63
Query: 302 FGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSV 361
QI GNN ++ + A+L+ + D +D+N+GCP K G GS M+ + P L V
Sbjct: 64 LSVQIMGNNAELMAESAKLVVD-CGADAVDVNMGCPTKRAVKGGVGSAML-KDPKLCYQV 121
Query: 362 RCASKLLSIP--FTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDW 419
AS +P + K+R G + +K+ I+ + + GA + VH R R Y SDW
Sbjct: 122 -LASMREQVPCALSAKIRAG-FDNKEGVFEILQAIVDSGADYLAVHPRRRVDHYEGHSDW 179
Query: 420 EYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
I + + P PV GNGD+ + D V M K GVMIGRGAL PWIF
Sbjct: 180 RIISALKEKS-PIPVIGNGDVRTAADAVRMFK-ETQCDGVMIGRGALSNPWIF 230
>UniRef50_Q8RFK3 Cluster: Nitrogen regulation protein NIFR3; n=3;
Fusobacterium nucleatum|Rep: Nitrogen regulation protein
NIFR3 - Fusobacterium nucleatum subsp. nucleatum
Length = 307
Score = 99.1 bits (236), Expect = 3e-19
Identities = 70/234 (29%), Positives = 116/234 (49%), Gaps = 8/234 (3%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQ 305
K+Y++P+ V + FR I ++F D+ EM +L + + + K + + Q
Sbjct: 3 KIYIAPIAGVTDYTFRGILEDFKPDLIFTEMVSVNAL--SVLNDKTISKILKLREGNAVQ 60
Query: 306 ICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCAS 365
I G + I + + EN + I+LN GCP+ I G G+ ++ ++ +
Sbjct: 61 IFGEDIEKIKASVKYI-ENLGVKHINLNCGCPMKKIVNCGYGAALVKEPEKIKKILSEIK 119
Query: 366 KLLS--IPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIE 423
+L+ +VK+R G Y++ + I G ITVHGR+RE Y+ +DW+YI+
Sbjct: 120 SVLNNDTKLSVKIRIG-YKEPENYIQIGKIAEELGCDHITVHGRTREQLYSGKADWKYIK 178
Query: 424 TCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
+ PV GNGDIF+ ED +E + V GVM+ RG PW+ +I+E
Sbjct: 179 EVKDNIS-IPVIGNGDIFTGEDALE-KIFYSNVDGVMLARGIFGNPWLIRDIRE 230
>UniRef50_Q0C0N1 Cluster: Putative tRNA-dihydrouridine synthase;
n=1; Hyphomonas neptunium ATCC 15444|Rep: Putative
tRNA-dihydrouridine synthase - Hyphomonas neptunium
(strain ATCC 15444)
Length = 345
Score = 99.1 bits (236), Expect = 3e-19
Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 10/234 (4%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQ 305
+++L+P++ + P RR FGA EM E L K RHE + Q
Sbjct: 22 RVWLAPMSGATDAPMRRQAVHFGAPAVVSEMVAGEMLAKARADVVRRTCRHEGAGYWIVQ 81
Query: 306 ICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCAS 365
+ P + A L+ E +D ID+N+GCP + GS +M LP + A
Sbjct: 82 LAARRPEDMLAGAVLMAE-AGVDVIDINMGCPSKQVTGGQSGSALMRDLPLAGEIIDAAL 140
Query: 366 K-LLSIPFTVKMRTGVYQDKKITHTIVPKMS-NWGASLITVHGRSREARYTKSSDWEYIE 423
+ P T+KMR G + D+ + + M+ + G ++TVHGR+R YT ++W +
Sbjct: 141 QGAAGRPVTLKMRLG-WDDENLNAPELAVMAQDRGVQMLTVHGRTRCQFYTGGANWAAVR 199
Query: 424 TCAQAATPCPVYGNGDIFSYEDYVEMRK-IAPT-VKGVMIGRGALIKPWIFNEI 475
A + PV NGDI D R+ +A + GVM+GR A+ +PW+ E+
Sbjct: 200 ATVDAVS-LPVIVNGDI---SDTASAREALAQSGAYGVMLGRAAMGRPWLVGEV 249
>UniRef50_Q5CSA9 Cluster: Dus1p, tRNA dihydrouridine synthase; n=2;
Cryptosporidium|Rep: Dus1p, tRNA dihydrouridine synthase
- Cryptosporidium parvum Iowa II
Length = 409
Score = 98.7 bits (235), Expect = 4e-19
Identities = 73/275 (26%), Positives = 132/275 (48%), Gaps = 13/275 (4%)
Query: 230 LIKLLPRER-KTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEM--ALCESLLKGL 286
+ KL P E K + + K L+P+ L FR ICK++G D+ M + S L+G
Sbjct: 3 MTKLSPWENWKNVLKSPKTVLAPMVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGY 62
Query: 287 KQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGG 346
++ + E +D Q CGN+P + K ++ + + + ID+N GCP ++ +
Sbjct: 63 RE--TNFQTCEEDDPMIVQFCGNDPETLVKASKFIDDKVK--GIDINFGCPQNIAKRGNY 118
Query: 347 GSGMMHRLPALETSVRCASKL-LSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVH 405
G+ ++ +E + S+ L P + K+R + D + T ++ ++ + GA +I VH
Sbjct: 119 GAFLLSNPDLMERIISTLSESDLKCPVSCKIRILDHHDLQPTINLIKRLESAGACMIAVH 178
Query: 406 GRSREAR--YTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGR 463
GR+ +R T ++WE ++ ++ P NG I +YED + VM
Sbjct: 179 GRTMTSRGVLTGPANWEALK-ILKSRCSIPFIANGGISNYEDIQKCLNYT-GADAVMSAE 236
Query: 464 GALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNY 498
G L PW+F K + + + +F+I +Y +Y
Sbjct: 237 GILENPWLFQGFKTPEAIN-NKPSQFQIALEYLDY 270
>UniRef50_Q08111 Cluster: Probable tRNA-dihydrouridine synthase;
n=21; Alphaproteobacteria|Rep: Probable
tRNA-dihydrouridine synthase - Rhodobacter capsulatus
(Rhodopseudomonas capsulata)
Length = 324
Score = 98.3 bits (234), Expect = 5e-19
Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 8/230 (3%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDL-FGAQIC 307
L+P+ + +LPFRR+ FGA + EM +L A + T L Q+
Sbjct: 16 LAPMAGITDLPFRRMVARFGAGLVVSEMVASGEMLTAKPSVRAKAQAELTAGLPTSVQLA 75
Query: 308 GNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKL 367
G + + A+++ + + ID+N+GCP + G+ +M +
Sbjct: 76 GREAAPMAEAAKIVAD-MGAEIIDINMGCPAKKVTGGLSGAALMRNPDHALRLIEAVVGA 134
Query: 368 LSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQ 427
+ +P T+KMR G +D+ I + G +I +HGR+R YT ++DW I +
Sbjct: 135 VDLPVTLKMRLGWDEDQLNAAEIAARAEAAGVKMIVIHGRTRMQFYTGAADWRAI-AAVR 193
Query: 428 AATPCPVYGNGDIFSYEDYVEMRKIAPT--VKGVMIGRGALIKPWIFNEI 475
AA PV NGDI D R+ GVM+GRGA PW +I
Sbjct: 194 AAVSVPVVANGDI---TDAASARRALDQSGAAGVMVGRGAQGAPWRLAQI 240
>UniRef50_Q89LQ7 Cluster: Nitrogen regulation protein; n=22;
Alphaproteobacteria|Rep: Nitrogen regulation protein -
Bradyrhizobium japonicum
Length = 371
Score = 97.9 bits (233), Expect = 7e-19
Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 8/231 (3%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDL--FGA 304
++L+P++ V + P RR+ E GA + EM + L G + R E +
Sbjct: 50 VFLAPMSGVTDSPVRRLVAELGAGLVVSEMTASDELANGHRMSRL---RCEATGIGPHVV 106
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G + + + A++ E D ID+N+GCP + GS +M L +
Sbjct: 107 QLAGCEAHWMAEGARIA-EAEGADIIDINMGCPARHVTGGQSGSALMRDLDHAVGLIDAT 165
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
+ +P T+KMR G + + + G L+TVHGR+R Y +DW+ I T
Sbjct: 166 IAAVKVPVTLKMRLGWDDRSRNAPELARRAEAAGIKLVTVHGRTRCQFYKGEADWDAIRT 225
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
+A + P+ NGDI SYE + + + VMIGRGA +PW+ +I
Sbjct: 226 VREAIS-IPLIVNGDITSYEKALAALE-SSGADAVMIGRGAQGQPWLPGQI 274
>UniRef50_Q9A7I4 Cluster: Nitrogen regulation protein Nifr3; n=2;
Caulobacter|Rep: Nitrogen regulation protein Nifr3 -
Caulobacter crescentus (Caulobacter vibrioides)
Length = 315
Score = 97.5 bits (232), Expect = 9e-19
Identities = 72/226 (31%), Positives = 96/226 (42%), Gaps = 4/226 (1%)
Query: 252 LTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNP 311
+T V +LPFR GA EM KG E L Q+ G +
Sbjct: 1 MTGVSDLPFRETASALGAPYVATEMVASAEFAKGRPDVVRRAAVGEGLPLTVIQLVGRDV 60
Query: 312 YIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGG-GSGMMHRLPALETSVRCASKLLSI 370
+ + A++ QE + IDLN GCP + GS +M E V A + + +
Sbjct: 61 DFMAQGARMAQE-AGAEIIDLNFGCPAKEVAAGAACGSALMREPDLAEALVAAAVEAVDV 119
Query: 371 PFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAAT 430
P TVKMR G D I + GA +TVHGR+R Y +DW + QA +
Sbjct: 120 PVTVKMRLGWDIDCLNAPDIARRAEAAGAKAVTVHGRTRNQFYKGVADWTAVAAVKQAVS 179
Query: 431 PCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
PV NGDI E + + GVMIGRG +PWI I+
Sbjct: 180 -VPVLVNGDIVDGETARQALE-QSGADGVMIGRGVYGRPWIAGAIE 223
>UniRef50_A7DPL5 Cluster: Putative TIM-barrel protein, nifR3 family;
n=1; Candidatus Nitrosopumilus maritimus SCM1|Rep:
Putative TIM-barrel protein, nifR3 family - Candidatus
Nitrosopumilus maritimus SCM1
Length = 320
Score = 97.5 bits (232), Expect = 9e-19
Identities = 72/265 (27%), Positives = 126/265 (47%), Gaps = 16/265 (6%)
Query: 243 WNNKLYLSPLTTVGNLPFRRICKEFGADVTCGE-------MALCESLLKGLKQEWALVKR 295
++++ +L+P+ V + R CK+ GA + E +A E L + +K ++
Sbjct: 5 FSSRAFLAPMAGVSDPALRLQCKKMGAGLVVTEFTSIHSIIAKEEQLKENMKTIQEFIEF 64
Query: 296 HETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLP 355
E E Q+ G++ Y + K A +++ D ID N+GCP I ++ G ++ +
Sbjct: 65 SEQERPISVQLFGSDLYALEKAATIVEPY--FDIIDYNMGCPAPHITQQMAGGALLQEVN 122
Query: 356 ALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMS-NWGASLITVHGRSREARYT 414
+ + P T+K+R+GV K + +++ + G +IT H R+ Y+
Sbjct: 123 LTQQIFETLVNAVKKPVTLKIRSGVTDASKFLFRDIAEIAEDQGIQMITFHPRTVSQGYS 182
Query: 415 KSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
S+DW+ I+ + + PV GNGDI + ED +M VMIGRGA+ P++F +
Sbjct: 183 GSADWKLIKELKEISN-IPVVGNGDITTPED-AKMMLDETGCDYVMIGRGAMGNPFLFEQ 240
Query: 475 I----KEQKIWDISSKDRFEILKKY 495
I K + S KDR + Y
Sbjct: 241 INDYLKTGSYKEYSFKDRLDSFFDY 265
>UniRef50_A0EG06 Cluster: Chromosome undetermined scaffold_94, whole
genome shotgun sequence; n=4; Intramacronucleata|Rep:
Chromosome undetermined scaffold_94, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 360
Score = 95.9 bits (228), Expect = 3e-18
Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 13/237 (5%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLL--KGLKQEWALVKRHETEDLFG 303
K +P+ L FR + +++G + M + K K E+ E LF
Sbjct: 19 KFICAPMVDQSELAFRMLTRKYGTTLAYTPMLHSRIMTESKSYKDEF-FTTCPEDRPLF- 76
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC 363
AQ+CG++P ++ K A ++Q+ + D ID+N+GCP + K G+ ++ + + T V+
Sbjct: 77 AQLCGHDPQVLIKAALMIQD--QCDAIDINLGCPQGIARKGLYGAYLLEKREQVLTIVKE 134
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREAR--YTKSSDWEY 421
+ +++P T K+R +++D+K T + + G S++TVHGR++E + DW
Sbjct: 135 LKQNINVPVTCKIR--MFKDRKRTLDLTKDIQEAGCSILTVHGRTKEQNKDFVGQCDWTI 192
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFN-EIKE 477
I Q PV+ NG I+++ D VE V VM L P +F+ EIK+
Sbjct: 193 IAEIKQ-ILQIPVFANGGIYTWSD-VERCLQETKVDAVMSSEALLENPALFSGEIKD 247
>UniRef50_Q8ZAX7 Cluster: tRNA-dihydrouridine synthase B; n=214;
Proteobacteria|Rep: tRNA-dihydrouridine synthase B -
Yersinia pestis
Length = 321
Score = 94.7 bits (225), Expect = 6e-18
Identities = 61/234 (26%), Positives = 106/234 (45%), Gaps = 7/234 (2%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
N L +P+ + + PFR +C GA + EM + + + + +
Sbjct: 10 NCLIAAPMAGITDRPFRALCHGMGAGMAVSEMLSSNPEVWRTDKSRLRMVHVDEPGIRNV 69
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
QI GN+P + A++ + ID+N+GCP + +K GS ++ ++ +
Sbjct: 70 QIAGNDPDEMAAAARI-NVASGAQIIDINMGCPAKKVNRKLAGSALLQHPDLVKQILSAV 128
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
+ +P T+K+RTG + + I N G +T+HGR+R + ++++ I
Sbjct: 129 VNAVDVPVTLKIRTGWSPEHRNCIEIAQLAENCGIQALTIHGRTRSCLFNGEAEYDSIRA 188
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIA--PTVKGVMIGRGALIKPWIFNEIK 476
Q + PV NGDI D + R + +MIGR A +PWIF EI+
Sbjct: 189 VKQTVS-IPVIANGDI---TDPHKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238
>UniRef50_Q54ES7 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 344
Score = 92.3 bits (219), Expect = 3e-17
Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 11/253 (4%)
Query: 250 SPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGN 309
+P+ LPFR + K++G D+T M + + + ++ ++ Q N
Sbjct: 60 APMVRFSRLPFRMLVKKWGCDITYTPMIMAAEFNRSEAARDSDFTINKLDEPLIVQFGVN 119
Query: 310 NPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLS 369
N + A+ +++ + ID+N GCP + K+G G+ ++ + V+ + +
Sbjct: 120 NAEELVSAAEKVKDYCQ--GIDINCGCPQRWVMKEGFGANLLLHPERIYDMVKQINNRVP 177
Query: 370 IPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAA 429
IP ++K+R V D K T + + G S ITVHGR+ + + D++ I+
Sbjct: 178 IPISIKIR--VQSDLKDTIELAKRAERIGVSWITVHGRTSAMKSSHPVDYDAIKLVKDNV 235
Query: 430 TPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRF 489
T PV+ NGD+F+ E+R+ V GVM RG L P +F + I I KD
Sbjct: 236 T-LPVFANGDVFTLSQSNEIRE-KTGVNGVMSARGLLTNPALFQGYDKTPIECI--KDFI 291
Query: 490 EILKKYSNYGLEH 502
I YS YG H
Sbjct: 292 NI---YSEYGGLH 301
>UniRef50_Q1QZQ6 Cluster: Dihydrouridine synthase, DuS; n=1;
Chromohalobacter salexigens DSM 3043|Rep: Dihydrouridine
synthase, DuS - Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB13768)
Length = 340
Score = 91.9 bits (218), Expect = 4e-17
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 6/150 (4%)
Query: 330 IDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLS---IPFTVKMRTGVYQDKKI 386
+DLN GCP + + GG+ ++ + + T VR ++ L+ I T K+R G + DK +
Sbjct: 99 VDLNFGCPAKTVNRHDGGASLLRQPERVHTVVRAVAEALAPLGIAVTAKIRLG-FDDKHV 157
Query: 387 THTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDY 446
+ GA+ + VH R+R Y + WE+I QA PV NGDI++ EDY
Sbjct: 158 ALACAEAAESGGAAHLVVHARTRREGYRPPAHWEWIGR-IQARLSIPVIANGDIWTLEDY 216
Query: 447 VEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
+ R ++ VM+GRG L PW+ IK
Sbjct: 217 WKARTLSGCA-DVMLGRGMLADPWLARRIK 245
>UniRef50_Q8SUV4 Cluster: Putative uncharacterized protein
ECU07_1610; n=1; Encephalitozoon cuniculi|Rep: Putative
uncharacterized protein ECU07_1610 - Encephalitozoon
cuniculi
Length = 341
Score = 91.9 bits (218), Expect = 4e-17
Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 16/233 (6%)
Query: 248 YLSPLTTVGNLP--FRRICKEFGADVTCGEMALCESLLKG----LKQEWALVKRHETEDL 301
Y + VGN +RR+ K GA++ EM C+S L+G +K W E +
Sbjct: 12 YFAVAPMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSRNPVKNRWYTTS--EGDRP 69
Query: 302 FGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSV 361
QICGN+P ++ + A ++Q++ D ID+N GCP + K G G+ + V
Sbjct: 70 LVVQICGNSPEVMLEAALIIQDHC--DAIDVNFGCPQKVARKGGYGAYLQENWKLTGEIV 127
Query: 362 RCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKS--SDW 419
+ S L++P K+R V+ + T + G SL+ VHGR+R+ R + W
Sbjct: 128 KVLSSGLNVPVFCKIR--VFGSIEKTVEYAKMIEEAGCSLLAVHGRTRDQRGAAMGFASW 185
Query: 420 EYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
++I + PV NG+I ++ D + GVM+G L P IF
Sbjct: 186 KHIRAIKENLR-IPVLSNGNIMTHHDVWRCLEYT-GCDGVMVGEAHLHNPLIF 236
>UniRef50_A4RVX6 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 371
Score = 91.1 bits (216), Expect = 8e-17
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 6/176 (3%)
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMM---HRLPALET 359
GAQI G+ P+++ A+ L IDLN GCP +++ KG GS ++ + A
Sbjct: 68 GAQIMGSEPWLLELAARHLATEKSAPRIDLNCGCPANVVTGKGAGSSLLRDPEYVYACVK 127
Query: 360 SVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDW 419
+V ++ T+K+R+G Y D + + GA +++H R+R Y+ ++W
Sbjct: 128 AVADGARGSGAHVTMKLRSG-YDDSSLLRENLLAAREAGARFVSLHARTRAQGYSGRANW 186
Query: 420 EYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
E I A+ PV GNGD+ S + E+ +++ G+M+GRGA+ P IF I
Sbjct: 187 EEI-AFAKDVLDIPVLGNGDVTSPQRAAELLRVS-DADGIMLGRGAVQDPLIFRRI 240
>UniRef50_A3VNG3 Cluster: Dihydrouridine synthase TIM-barrel
protein; n=5; Alphaproteobacteria|Rep: Dihydrouridine
synthase TIM-barrel protein - Parvularcula bermudensis
HTCC2503
Length = 368
Score = 90.6 bits (215), Expect = 1e-16
Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 7/225 (3%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA-QIC 307
L+P++ + +LPFRR GA + EM E ++ + + AL T D Q+
Sbjct: 32 LAPMSGITDLPFRRAALRAGAPLVVSEMVASEEWVRE-RPDVALRAALPTGDSLNVIQLA 90
Query: 308 GNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKL 367
G + + A E D ID+N+GCP + GS +M + + ++
Sbjct: 91 GREARWMREGAAKA-EALGADIIDINMGCPARKVTGLLSGSALMRDVDHALSLIKATLSG 149
Query: 368 LSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQ 427
S P T+KMR G I ++ G ++ITVHGR+R+ Y ++DW + +
Sbjct: 150 TSRPVTLKMRLGWDHGHLNAPEIAKGAADAGVAVITVHGRTRQQFYKGTADWRAVRATVE 209
Query: 428 AATPCPVYGNGDIFSYEDYVEMRKIAPT-VKGVMIGRGALIKPWI 471
A + PV NGDI +D +A + GVMIGR A +PW+
Sbjct: 210 AVS-VPVIVNGDI--VDDVTARAALAQSGAAGVMIGRAAEGRPWL 251
>UniRef50_A4S141 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 307
Score = 90.6 bits (215), Expect = 1e-16
Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 8/233 (3%)
Query: 244 NNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFG 303
N + +++P+ L FR +CK +GA + M ++ K + +
Sbjct: 15 NPRYHVAPMVDQSELAFRELCKRYGATLGYTPMIHARLFVESPKYRREIFSTSTRDRPLL 74
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC 363
AQ C N+P I+ + A ++ D +D+N GCP + + G+ +M +E +R
Sbjct: 75 AQFCANDPEILLRAATMIAPYC--DGVDINFGCPQRIAKRGNYGAFLMDDWKTVEALIRK 132
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKS--SDWEY 421
+ L +P T K+R VY D + T + GA ++ VHGR+RE + ++W Y
Sbjct: 133 LDEELPVPVTAKIR--VYDDLETTLKYAKMVEAAGAQIVAVHGRTREQKRCADIRANWAY 190
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
I + A PV NGDI S + + A GV+ L P +F++
Sbjct: 191 IR-AIKDALKVPVLANGDIRSLAEARACLE-ATGADGVLSAEPLLSNPALFSD 241
>UniRef50_A5K1E0 Cluster: tRNA-dihydrouridine synthase, putative;
n=5; Plasmodium|Rep: tRNA-dihydrouridine synthase,
putative - Plasmodium vivax
Length = 340
Score = 89.4 bits (212), Expect = 2e-16
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 7/230 (3%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQ 305
K L+P+ + L FR +C+ + +T M ++ ++ K + + E ++ AQ
Sbjct: 27 KHILAPMVDLSELAFRLLCRNYNCHLTFTPMLHAKNFVEHEKYRKSYFQSCEKDEPVIAQ 86
Query: 306 ICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCAS 365
CGNN II + ++ E++ +DLN+GCP + K G+ ++ + + V +
Sbjct: 87 FCGNNSKIILNAIEYIK--NEVNAVDLNLGCPQQIAKKGNYGAFLLQKHDEVVNLVSDIT 144
Query: 366 KLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYT--KSSDWEYIE 423
+IP T K+R + QD + T + + + +ITVHGR++E + T K D+E I+
Sbjct: 145 NNCNIPITCKIRK-IDQDYQKTLNLCYDLQSRNVKMITVHGRTKEEKGTNIKQCDYEIIK 203
Query: 424 TCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFN 473
+ P+ NG I +ED + VM L KP+ F+
Sbjct: 204 IIKERLN-IPIIANGSIEHFEDIQKCLNYT-KADAVMCAEILLEKPYFFS 251
>UniRef50_Q9JUP6 Cluster: tRNA-dihydrouridine synthase C; n=4;
Neisseria|Rep: tRNA-dihydrouridine synthase C -
Neisseria meningitidis serogroup A
Length = 333
Score = 89.0 bits (211), Expect = 3e-16
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 5/152 (3%)
Query: 328 DFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLS--IPFTVKMRTGVYQDKK 385
D IDLN GCP + + GG+ ++ + V+ + L IP T KMR G Y+DK
Sbjct: 102 DKIDLNFGCPAPTVNRHKGGAILLKEPELIFHIVKTLRERLPAHIPLTAKMRLG-YEDKS 160
Query: 386 ITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYED 445
++ GA +TVH R++ Y + WE+I + + PV NGD+FS +D
Sbjct: 161 PALECACAIAEGGACGLTVHARTKAEGYEPPAHWEWIRK-IRDSVDIPVTANGDVFSLQD 219
Query: 446 YVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
Y+ ++ I+ VM+GRGA+I+P + +IK+
Sbjct: 220 YIGIKTIS-GCNSVMLGRGAVIRPDLARQIKQ 250
>UniRef50_O52532 Cluster: tRNA-dihydrouridine synthase B; n=6;
Gammaproteobacteria|Rep: tRNA-dihydrouridine synthase B
- Serratia marcescens
Length = 334
Score = 89.0 bits (211), Expect = 3e-16
Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 7/234 (2%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
N L +P+ + + PFR +C GA + EM + + + + +
Sbjct: 10 NCLIAAPMAGITDRPFRTLCHAMGAGMAVSEMLSSNPEVWRTDKSRLRMVHSDEPGIRSV 69
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
QI G +P + A++ + ID+N+GCP + +K GS ++ ++ +
Sbjct: 70 QIAGCDPDDMAAAARI-NVASGAQLIDINMGCPAKKVNRKLAGSALLQYPDLVKRILHAV 128
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
+ +P T+K+RTG + + I + G +T+HGR+R + ++++ I
Sbjct: 129 VDAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGDAEYDSIRA 188
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIA--PTVKGVMIGRGALIKPWIFNEIK 476
Q+ + P+ NGDI D + R + +MIGR A +PWIF EI+
Sbjct: 189 VKQSVS-IPIIANGDI---TDPHKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238
>UniRef50_O74553 Cluster: tRNA dihydrouridine synthase Dus4; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus4 - Schizosaccharomyces pombe (Fission
yeast)
Length = 326
Score = 88.6 bits (210), Expect = 4e-16
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 5/228 (2%)
Query: 250 SPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGN 309
+P+ LPFR++ +++ D+ M L + L K + ++ + Q +
Sbjct: 25 APMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHP-KGRYFDFSTNDADASLILQFGVD 83
Query: 310 NPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLS 369
+P I+ K AQL+ +D I +N GCP ++G GS ++ + VR L
Sbjct: 84 DPVILEKAAQLV--GPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAVKSTLG 141
Query: 370 IPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAA 429
F +++ + +D T ++ + GA +ITVHGR+R+ R + + + I +
Sbjct: 142 ESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTRQDRSSFPVNLDAIRE-VRPC 200
Query: 430 TPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
PV NGD+ S +E+ K T +G+M RG L P +F +E
Sbjct: 201 VQIPVVANGDVKSLRKGLEIAKYTET-QGIMSARGLLENPALFAGYEE 247
>UniRef50_Q6P1R4 Cluster: tRNA-dihydrouridine synthase 1-like; n=20;
Euteleostomi|Rep: tRNA-dihydrouridine synthase 1-like -
Homo sapiens (Human)
Length = 473
Score = 87.8 bits (208), Expect = 7e-16
Identities = 60/194 (30%), Positives = 104/194 (53%), Gaps = 12/194 (6%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGG-GSGMMHRLPALETSVRC 363
Q C N+P + + A L Q+ D IDLN+GCP +I K+G G+ + L+ +
Sbjct: 79 QFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQDEWDLLQRMILL 135
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREAR--YTKSSDWEY 421
A + LS+P T K+R DK + + + G L+TVHGR++E + + ++ WE+
Sbjct: 136 AHEKLSVPVTCKIRVFPEIDKTVRY--AQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIW 481
I+ + A PV+ NG+I +D VE V+GVM G L P +F E + +W
Sbjct: 194 IK-AVRKAVAIPVFANGNIQCLQD-VERCLRDTGVQGVMSAEGNLHNPALF-EGRSPAVW 250
Query: 482 DISSKDRFEILKKY 495
++ +++ +I++++
Sbjct: 251 EL-AEEYLDIVREH 263
>UniRef50_Q7UXK8 Cluster: Putative uncharacterized protein; n=3;
Planctomycetaceae|Rep: Putative uncharacterized protein
- Rhodopirellula baltica
Length = 374
Score = 86.6 bits (205), Expect = 2e-15
Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 10/231 (4%)
Query: 252 LTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWA--LVKRHETEDLFGAQICGN 309
L+ +LP R I + A T E+ L + LL K+E + + E G Q+ G
Sbjct: 45 LSGYSDLPMRVIARRHSASYTICEVMLDQFLLSLTKREKTRHFLDIADEEHPVGGQLMGA 104
Query: 310 NPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKK-GGGSGMMHRLPALETSVRCASKLL 368
P + A L E D ID+N GCP+ + + GG + A+E R +
Sbjct: 105 EPEQFSAGALKLVE-AGFDVIDVNFGCPVKKVLGRCRGGFHLSQPAVAIEILRRTRDVVP 163
Query: 369 S-IPFTVKMRTGVY---QDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
IP TVKMR G+ + ++ I+ + G + +TVHGR+ RY S W +++
Sbjct: 164 DHIPVTVKMRRGMDDTPESREQFFEILDGAIDAGLAGVTVHGRTVMQRYIGPSRWAFLKE 223
Query: 425 CAQ-AATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
Q + G+GD+F+ D +EM + + GV I RGA+ PWIF +
Sbjct: 224 VKQHVGDRLKILGSGDLFAAVDGLEMMR-QTGIDGVTIARGAIGNPWIFQQ 273
>UniRef50_Q7UKE8 Cluster: Putative uncharacterized protein; n=2;
Planctomycetaceae|Rep: Putative uncharacterized protein
- Rhodopirellula baltica
Length = 364
Score = 86.6 bits (205), Expect = 2e-15
Identities = 66/233 (28%), Positives = 102/233 (43%), Gaps = 14/233 (6%)
Query: 250 SPLTTVGNLPFRRICKEFG-ADVTCGEMA-------LCESLLKGLKQEWALVKRHETEDL 301
+P+ N FR I ++FG A + EM L E+ + + W + E L
Sbjct: 33 APMAGFTNAAFRHIVRQFGGAGLLATEMVNARGFVWLDENEAEHPDRLWGVAD--EPRPL 90
Query: 302 FGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSV 361
QI N+P + KV + L E + +D+N GCP+ + +K + R P ++
Sbjct: 91 -AVQIWDNDPETMAKVGRRLAEEYRVSVVDINFGCPVRQVTEKAHSGSYLLREPNRMHAI 149
Query: 362 --RCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDW 419
R P T K+R G ++ + I + GA+ +TVHGR+ + ++DW
Sbjct: 150 ISRLVQVCAPTPVTAKIRLGCSRENINCNEIARVVEEAGAAALTVHGRTAADMFRGNADW 209
Query: 420 EYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
E I P+ GNGD+ S E V V VMI R L +PW+F
Sbjct: 210 ERISEIKSHLRNIPLIGNGDLDSAEKVVAAFD-QYDVDAVMIARACLGRPWLF 261
>UniRef50_Q30WR3 Cluster: Dihydrouridine synthase family protein;
n=3; Desulfovibrio|Rep: Dihydrouridine synthase family
protein - Desulfovibrio desulfuricans (strain G20)
Length = 376
Score = 86.6 bits (205), Expect = 2e-15
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 11/234 (4%)
Query: 244 NNKLYLSPLTTVGNLPFRRICKEFGADVTCGEM--ALCESLL---KGLKQEWALVKRHET 298
N +L+L+P+ +G++ +R++ + FG CG + +C + + + R E
Sbjct: 56 NGRLFLAPMAGLGHIAYRQVLESFGG---CGLVFTGMCSARAVPTENPARSPVFSWRPEE 112
Query: 299 EDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALE 358
Q+ G +P + A+ + E+ +D+N+GC + I KKG G+ ++
Sbjct: 113 LPALVCQLFGADPQDMAAAARRV-ESEGFFGVDINMGCSVAPIVKKGCGADLLRDPERAV 171
Query: 359 TSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSD 418
V + +S+P VKMRTG D + + ++ + GA + H R R T
Sbjct: 172 RMVDAVRRAVSVPVFVKMRTGWSPDPEPAVNLARRLQDAGADALVFHPRVAPDRRTHRPR 231
Query: 419 WEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
+I + A PV GNGD+F D M + GV +GR A+ +PWIF
Sbjct: 232 TAHI-GLVKDAVDIPVIGNGDVFDAADCAAMLE-RTGCDGVSLGRLAIARPWIF 283
>UniRef50_Q9FH91 Cluster: Gb|AAF51525.1; n=6; Magnoliophyta|Rep:
Gb|AAF51525.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 423
Score = 86.6 bits (205), Expect = 2e-15
Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 14/232 (6%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMA---LCESLLKGLKQEWALVKRHETEDLF 302
K ++P+ LPFR +C+++GA M + K QE+ K E LF
Sbjct: 89 KYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTCK--EDRPLF 146
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
Q C N+P + + A+ ++ D++D+N+GCP + + G+ +M LP +++ V
Sbjct: 147 -VQFCANDPDTLLEAAKRVEPYC--DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 203
Query: 363 CASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKS--SDWE 420
++ L++P + K+R ++ + + T + + G SL+ VHGR+R+ + K +DW
Sbjct: 204 KLAQNLNVPVSCKIR--IFPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWS 261
Query: 421 YIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
I+ + A PV NG++ ED K V+GV+ L P F
Sbjct: 262 AIKE-VKNAMRIPVLANGNVRCIEDVDNCIK-ETGVEGVLSAETLLENPAAF 311
>UniRef50_Q9VPM1 Cluster: CG3645-PA, isoform A; n=2; Diptera|Rep:
CG3645-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 505
Score = 86.2 bits (204), Expect = 2e-15
Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 13/240 (5%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLK-QEWALVKRHETEDLFGAQIC 307
++P+ L +R +C+ +GA++ M K ++ AL E L Q C
Sbjct: 32 VAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRPLI-IQFC 90
Query: 308 GNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGG-GSGMMHRLPALETSVRCASK 366
GN+ I A L Q++ D +D+N+GCP I K+G GS + L V
Sbjct: 91 GNDAQQILDAALLAQDHC--DAVDINLGCP-QAIAKRGHYGSFLQDEWELLTEIVSTLHA 147
Query: 367 LLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREAR--YTKSSDWEYIET 424
L++P T K+R +++D + T + G L+TVHGR+RE + T ++W YI+
Sbjct: 148 KLAVPVTCKIR--IFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWNYIKN 205
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDIS 484
Q P+ NG+I + +D V V GVM G L P IF + +W ++
Sbjct: 206 VRQ-HIKIPMLANGNILALDD-VHRCLTETGVDGVMSAEGNLHNPAIFKGV-SPPVWQMA 262
>UniRef50_Q9HGN6 Cluster: tRNA dihydrouridine synthase Dus1; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 399
Score = 86.2 bits (204), Expect = 2e-15
Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 14/234 (5%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWA----LVKRHETEDL 301
K L+P+ LP+R + + GAD+ M S L G +++ + E
Sbjct: 19 KRILAPMVDQSELPWRILARRSGADLCYSPMF--HSRLFGESEDYRNKVFSTRTIPEERP 76
Query: 302 FGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSV 361
Q CGN+P I+ K A++ D +D+N+GCP + K GS + +E+ +
Sbjct: 77 LIIQFCGNDPEIMLKAAKIAAPYC--DAVDVNLGCPQGIAKKGKYGSFLQENWNLIESII 134
Query: 362 RCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREAR--YTKSSDW 419
LSIP T K+R ++ D + T + GAS++ VHGR RE + +T +DW
Sbjct: 135 TKLHTELSIPVTAKIR--IFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIADW 192
Query: 420 EYIETCAQ-AATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
E I+ + + ++ NG+I +D K V GV+ G+L P IF
Sbjct: 193 EQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYT-GVDGVLSAEGSLYNPRIF 245
>UniRef50_A6DU09 Cluster: Dihydrouridine synthase family protein;
n=1; Lentisphaera araneosa HTCC2155|Rep: Dihydrouridine
synthase family protein - Lentisphaera araneosa HTCC2155
Length = 334
Score = 85.8 bits (203), Expect = 3e-15
Identities = 58/218 (26%), Positives = 105/218 (48%), Gaps = 11/218 (5%)
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC 363
AQ+ G NP ++ + D +D+N+GCP+ I K+GG S +++ + V
Sbjct: 84 AQVWGKNPDKFSEAISKYVDPEVFDGVDINMGCPVAKIVKQGGCSALINTPEIAKELVLA 143
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIE 423
A +P +VK RTG+ K T + + + I +HGR+++ + + W+ I
Sbjct: 144 AKAATKLPVSVKTRTGITAHK--TEEWMTHLLEVEPAAIILHGRTQKQQSEGLASWDEIA 201
Query: 424 TCAQA----ATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFN-EIKEQ 478
A+ P +GNGD+ S E ++ + + G MIGRG PWIFN ++
Sbjct: 202 KGARVRDRLKPHIPFWGNGDVRSIEQAHQLCQ-EHKLDGAMIGRGVFHNPWIFNTDLLGD 260
Query: 479 KIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRF 516
+ + +++ +L ++++ WGS + + RRF
Sbjct: 261 NV--LPPEEKIALLWRHASLYTSFWGSQ-KNFLTLRRF 295
>UniRef50_Q00RI1 Cluster: OSIGBa0125M19.5 protein; n=9;
Magnoliophyta|Rep: OSIGBa0125M19.5 protein - Oryza
sativa (Rice)
Length = 319
Score = 84.6 bits (200), Expect = 7e-15
Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 22/248 (8%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLK-------GLKQEWALV 293
+++ +KL L+P+ VG LPFR + E+GAD+T GE + LK L L
Sbjct: 1 MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLE 60
Query: 294 KRHET---------EDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKK 344
+ +T D Q+ ++ K AQL+ + ID+N+GCP
Sbjct: 61 RGTDTVVFRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAA--IDINMGCPKSFSLSG 118
Query: 345 GGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITV 404
G G+ ++ + + + + L T K+R + ++ T + ++ G + V
Sbjct: 119 GMGAALLSKPELIHDILTTLRRNLDTTVTCKIR--LLNTRQDTVELARRVEKIGVPALAV 176
Query: 405 HGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRG 464
HGR + R + W+ I A + PV NGD+F YED+ + K A VM+ RG
Sbjct: 177 HGRKVKDRPRDPAKWDEIADVVSALS-IPVIANGDVFEYEDFKRI-KDATGAASVMVARG 234
Query: 465 ALIKPWIF 472
A+ IF
Sbjct: 235 AMWNASIF 242
>UniRef50_Q5LRN6 Cluster: TRNA-dihydrouridine synthase, putative;
n=10; Rhodobacterales|Rep: TRNA-dihydrouridine synthase,
putative - Silicibacter pomeroyi
Length = 327
Score = 84.2 bits (199), Expect = 9e-15
Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 3/227 (1%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICG 308
L+P+ + + PFR + EFGA + EM + +++ + + Q+ G
Sbjct: 16 LAPMAGITDRPFRDLVMEFGAGMVVSEMVASQEMVQAKPGVRERAELSADVENTAVQLAG 75
Query: 309 NNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLL 368
+ + I + A+ + + ID+N+GCP + GS ++ + +
Sbjct: 76 RDTHWIAEAARQVADR-GARVIDINMGCPAKKVTNGYSGSALLKTPDHALRLIEAVVAAV 134
Query: 369 SIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQA 428
+P T+K R G + + + G ++T+HGR+R Y +DW I +
Sbjct: 135 DVPVTLKTRLGWDDTLMNAPDVARRAAEAGVRMVTIHGRTRCQFYKGRADWAAI-AAVRE 193
Query: 429 ATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
A P+ NGDI + GVM+GRGA +PW+ +I
Sbjct: 194 AVDVPLIANGDI-TCAHTARQALDRSGADGVMVGRGAQGRPWLLAQI 239
>UniRef50_Q54XQ6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 435
Score = 84.2 bits (199), Expect = 9e-15
Identities = 64/236 (27%), Positives = 113/236 (47%), Gaps = 14/236 (5%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLL--KGLKQE-WALVKRHETEDLF 302
K ++P+ L FR +C+++GAD+ M ++ K +++ W+ E L
Sbjct: 53 KKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRRDYWSTCP--EDRPLV 110
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
Q CGN P + K A+ ++++ D IDLN+GCP + + GS ++ + + V+
Sbjct: 111 -VQFCGNEPEWVVKAAKYIEDHC--DAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVQ 167
Query: 363 CASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKS--SDWE 420
K + +P K+R D I + ++ G L+T+HGR++E + S ++W+
Sbjct: 168 ELHKHIKVPIFCKIRLLPNLDDTI--KLALQLQEAGCQLLTIHGRTKEQKGHNSGIANWK 225
Query: 421 YIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
I T + + PV NG + YED ++ GVM G L P F+ +K
Sbjct: 226 AIRTIREQLS-IPVIANGSVVQYED-IDRCLEETGADGVMSAEGILANPSFFSGLK 279
>UniRef50_Q8YMN5 Cluster: Transcriptional regulator; n=5;
Bacteria|Rep: Transcriptional regulator - Anabaena sp.
(strain PCC 7120)
Length = 349
Score = 83.8 bits (198), Expect = 1e-14
Identities = 61/232 (26%), Positives = 115/232 (49%), Gaps = 8/232 (3%)
Query: 249 LSPLTTVGNLPFRRICKEFGA-DVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQIC 307
L+P+ V NL F ++ +G+ D E + + + + ++T AQ+
Sbjct: 29 LAPMQDVTNLWFMKVIAHYGSPDYFFTEYFRVNDTSRLNRGILSAITENDTGRPVFAQMI 88
Query: 308 GNN-PYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASK 366
G + P ++ +L N + +DLN+GCP IY+K G G++ +E + +
Sbjct: 89 GESIPDLVRTAKELCGYN--IAGVDLNMGCPAPRIYRKNVGGGLLLSPAKVEQILEELRQ 146
Query: 367 LLSI-PFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETC 425
++ P TVKMR G +++ + I+ ++ L+++HGR+ + Y + ++ I
Sbjct: 147 AVNDRPLTVKMRVG-FENTDTFYEILDIVNRHNIDLLSLHGRTVKDMYHGAVKYDLIAEA 205
Query: 426 AQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
+ CPV NG+I S +E+ + GVM+GR A+ PW+FN+I++
Sbjct: 206 VRRVD-CPVLANGNIHSATTALEVLERTGAA-GVMVGRWAIGNPWLFNQIRQ 255
>UniRef50_A3RPJ2 Cluster: TRNA-dihydrouridine synthase; n=2;
Proteobacteria|Rep: TRNA-dihydrouridine synthase -
Ralstonia solanacearum UW551
Length = 369
Score = 83.4 bits (197), Expect = 2e-14
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 7/202 (3%)
Query: 330 IDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC--ASKLLSIPFTVKMRTGVYQDKKIT 387
IDLN GCP ++ + GGG+ ++ L T V A+ +I T KMR GV D +
Sbjct: 136 IDLNFGCPAKVVNRHGGGAMLLSTPELLHTIVSAVRAAVPANIAVTAKMRLGV-SDTSLA 194
Query: 388 HTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYV 447
++ GA+ + VH R+R+ Y + W++I A A PV NG++++ D+
Sbjct: 195 IDCATALAEGGAASLVVHARTRDHGYRPPAHWDWIARIAD-AVEVPVIANGEVWTVADWE 253
Query: 448 EMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDT 507
R ++ VMIGRGA+ P++ I+ Q S+ + +L+ +Y L+ +
Sbjct: 254 RCRAVS-GCDDVMIGRGAVSDPFLAQRIRGQMERTPSNAEWPLVLRYLVDY-LKMLHARI 311
Query: 508 QGVESTRRFLLEWLSFLYRYVP 529
R L WLS+L R P
Sbjct: 312 AACHEHGRVKL-WLSYLKRTWP 332
>UniRef50_Q4PG83 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 527
Score = 83.0 bits (196), Expect = 2e-14
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 8/177 (4%)
Query: 297 ETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPA 356
+T+ Q C N+P + K A+++++ D +DLN+GCP + + GS +M
Sbjct: 130 DTDRPLFVQFCSNDPETLLKAAKVVEDRC--DAVDLNLGCPQHIARRGHYGSYLMEDWSL 187
Query: 357 LETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSR--EARYT 414
+ + + L +P T KMR VY+ + T T + GA +ITVHGR+R + T
Sbjct: 188 IFSLINILHVNLKVPVTAKMR--VYESVEKTITYARLLERAGAQIITVHGRTRNMKGHLT 245
Query: 415 KSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWI 471
+DW I +A PV+ NG++ +D+ + A GVM G L P I
Sbjct: 246 GLADWAKIRAVKEAVN-VPVFANGNVLYPQDFYD-ALAATGADGVMSAEGNLYNPAI 300
>UniRef50_Q4AHG7 Cluster: Dihydrouridine synthase, DuS; n=1;
Chlorobium phaeobacteroides BS1|Rep: Dihydrouridine
synthase, DuS - Chlorobium phaeobacteroides BS1
Length = 337
Score = 82.2 bits (194), Expect = 4e-14
Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 330 IDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHT 389
I+ N+GCP + K GSGM+ +E+ ++ + L + +VK R G Y+D
Sbjct: 93 INWNMGCPFPRVANKQRGSGMLPHPDLVESILQKITPQLPLNLSVKCRLG-YEDASEIDA 151
Query: 390 IVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEM 449
++P + S +TVH R + Y+ +W I+ P NGDIFS EDY +
Sbjct: 152 LIPIFNEHRISELTVHARLGKQMYSGEVNWSAIQKLLNNLK-IPFAYNGDIFSVEDYQKF 210
Query: 450 RKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSK 486
+ P + +MIGRG L P++ ++K ++ D+S +
Sbjct: 211 KITFPQINTLMIGRGLLTDPFLPAKLKGLELPDLSQQ 247
>UniRef50_UPI0000D5693C Cluster: PREDICTED: similar to
dihydrouridine synthase 4-like; n=3; Coelomata|Rep:
PREDICTED: similar to dihydrouridine synthase 4-like -
Tribolium castaneum
Length = 451
Score = 81.8 bits (193), Expect = 5e-14
Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 5/225 (2%)
Query: 250 SPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGN 309
+P+ L FR + K + D+ M L +S K K + + Q N
Sbjct: 29 APMVRYSKLQFRNLVKSYNCDLCYTPMILADSFCKSGKARANEFTTNMNDTPLITQFAAN 88
Query: 310 NPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLS 369
Y A ++ + D +DLN GCP +G G M+ + + V+ ++
Sbjct: 89 KVYDFVGAAYMV--SPFCDGVDLNCGCPQRWAKLQGLGCIMLEKPEVIYDLVKQCRNVIP 146
Query: 370 IPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAA 429
PFTV ++ + +D + + I ++ + G S +TVHGR+ + + T + E + +
Sbjct: 147 KPFTVSVKLRLQKDLRRSVEICRQLEHCGVSFLTVHGRTPD-QLTGEVNKEALNLIV-GS 204
Query: 430 TPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
PV NG + S ED +E+++ KGVM+ G L P +F E
Sbjct: 205 VNVPVVANGGVKSLEDCLELQE-KTNCKGVMVANGLLTNPTLFTE 248
>UniRef50_Q47C15 Cluster: Dihydrouridine synthase, DuS; n=2;
Betaproteobacteria|Rep: Dihydrouridine synthase, DuS -
Dechloromonas aromatica (strain RCB)
Length = 319
Score = 81.8 bits (193), Expect = 5e-14
Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 10/183 (5%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G++P+ + + A+ L +DLN GCP +++ GGS ++ P L + A
Sbjct: 69 QLLGSDPHFMAENARRLVALNPAG-VDLNFGCPAPTVFRHRGGSALLGE-PELLNEITSA 126
Query: 365 SKLL---SIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEY 421
+ + IPFT KMR G+ D + G + + VHGR+R Y + WE+
Sbjct: 127 VRSVVPAHIPFTAKMRLGI-DDTSRAIDCAQALEAAGINELIVHGRTRSDGYRPPARWEW 185
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKI- 480
I+ + A P+ NG++++ ED+ ++A +M+GRGA+ P + ++ ++
Sbjct: 186 IDK-VRDAIHIPLIANGEVWTVEDFRNC-QLATGCADIMVGRGAVADPLLARRVRGEETG 243
Query: 481 -WD 482
WD
Sbjct: 244 GWD 246
>UniRef50_Q5A4Y0 Cluster: Potential tRNA dihydrouridine synthase;
n=2; Saccharomycetales|Rep: Potential tRNA
dihydrouridine synthase - Candida albicans (Yeast)
Length = 339
Score = 81.4 bits (192), Expect = 6e-14
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 3/222 (1%)
Query: 251 PLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNN 310
P+ LPFR +C+ + D+ M L ++ ++++ Q+ NN
Sbjct: 32 PMVRYSKLPFRELCRFYDVDIVYTPMILAREFVRNEVARSTDFTTNDSDKCVIVQVGVNN 91
Query: 311 PYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSI 370
K +++ + +D I +N GCPI ++G G+ +M + ++ A
Sbjct: 92 VDDFMKFIEMI--HPFVDGIGINCGCPIKEQVREGIGAALMSDPDLVAELIKTAKDKYGD 149
Query: 371 PFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAAT 430
+ + +++D T V K+ G +TVHGR++ R + + + I+ + T
Sbjct: 150 SICIDTKIRIHRDINQTIDFVNKVVEAGTDTLTVHGRTKNTRSSVPVNLDAIKIIRENVT 209
Query: 431 PCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
PV NGD F+ D+ ++ V GVM RG L P +F
Sbjct: 210 TIPVIANGDCFTLTDFQKIVDYT-GVDGVMSARGVLANPALF 250
>UniRef50_A6W1E8 Cluster: Dihydrouridine synthase DuS; n=1;
Marinomonas sp. MWYL1|Rep: Dihydrouridine synthase DuS -
Marinomonas sp. MWYL1
Length = 335
Score = 81.0 bits (191), Expect = 8e-14
Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 6/199 (3%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G+N ++ + A L ID+N GCP + GGGS ++ AL +
Sbjct: 86 QLLGSNAELMAESA-LNATKAGAKHIDVNFGCPAKRVNGHGGGSVLLQTPDALYDIMSAI 144
Query: 365 SKLL--SIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI 422
L IP + K+R G ++D+ + V + G +T+HGR+++ Y + WE I
Sbjct: 145 RDTLPSDIPVSAKIRLG-FEDEALLFDNVAAIEAAGVGTLTIHGRTKKDGYKPPARWEKI 203
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWD 482
QA T V NGDI + + + I + MIGRG+L P++F +I+++
Sbjct: 204 GEI-QAKTKMTVVANGDITDTKSLLRCQSITGC-QHFMIGRGSLNNPFVFQQIRKELNGQ 261
Query: 483 ISSKDRFEILKKYSNYGLE 501
S+ D + + + +Y E
Sbjct: 262 ESTADTTNLNRLFISYSRE 280
>UniRef50_A1VHK2 Cluster: Dihydrouridine synthase, DuS; n=4;
Desulfovibrionaceae|Rep: Dihydrouridine synthase, DuS -
Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Length = 449
Score = 81.0 bits (191), Expect = 8e-14
Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 4/232 (1%)
Query: 248 YLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQIC 307
+L+PL +L FR +C++ GA V C EM + L+ L+ + Q+
Sbjct: 35 WLAPLAGYSDLSFRLLCRKAGAAVCCTEMVSAKGLIYYSPGTRDLLATTPEDAPLVVQLF 94
Query: 308 GNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKL 367
G +P I+ + + L E + DLN+GC + + K G G+ M+ +P R +
Sbjct: 95 GCDPDIMVRAMEPLLEQ-GFRWFDLNMGCSVPKVVKTGCGAAMLRDVPQALAVARAMLRT 153
Query: 368 LSI-PFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCA 426
K R G +++ + +++ GA +T+H R ++ + W +
Sbjct: 154 AGAGRVGFKFRLGWDVGQEVWADLGRALADLGAGWVTLHPRYARQGFSGEARWSTLGELV 213
Query: 427 QAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQ 478
+A + PV +GD+F+ D V + V VM RGAL P +F+ +E+
Sbjct: 214 RAVS-VPVIASGDLFTAADGVRCLR-ETGVASVMYARGALNDPGVFHAHRER 263
>UniRef50_Q5KP54 Cluster: TRNA dihydrouridine synthase, putative;
n=1; Filobasidiella neoformans|Rep: TRNA dihydrouridine
synthase, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 610
Score = 80.6 bits (190), Expect = 1e-13
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 8/170 (4%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q C N+P I+ A+ ++ D +D+N GCP + + GS + + +
Sbjct: 155 QFCANDPDILLAAAKKVEHRC--DAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLISTL 212
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSRE--ARYTKSSDWEYI 422
+ LS+P T K R ++ D T M GA ++T HGR+RE + T +DWEYI
Sbjct: 213 HENLSVPVTAKFR--IFPDLDKTIAYARMMEAAGAQILTCHGRTREMKGQNTGLADWEYI 270
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
+ A PV+ NG+I ED ++ GVM G L P IF
Sbjct: 271 RE-VKKAVKVPVFANGNILYREDVDRCMEVT-GCDGVMTAEGNLSNPAIF 318
>UniRef50_Q8XYX1 Cluster: tRNA-dihydrouridine synthase C; n=26;
Proteobacteria|Rep: tRNA-dihydrouridine synthase C -
Ralstonia solanacearum (Pseudomonas solanacearum)
Length = 326
Score = 80.6 bits (190), Expect = 1e-13
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 7/152 (4%)
Query: 330 IDLNIGCPIDLIYKKGGGSGMM---HRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKI 386
IDLN GCP ++ + GGG+ ++ L + ++VR A I T KMR GV D +
Sbjct: 93 IDLNFGCPAKVVNRHGGGAMLLATPELLHRIVSTVRAAVP-ARIAVTAKMRLGV-SDTSL 150
Query: 387 THTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDY 446
++ GA+ + VH R+R+ Y + W++I A A PV NG++++ +D+
Sbjct: 151 AIACATALAEGGAASLVVHARTRDHGYRPPAHWDWIARIADAVR-VPVVANGEVWTVDDW 209
Query: 447 VEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQ 478
R ++ VMIGRGA+ P++ I+ Q
Sbjct: 210 ARCRAVS-GCDDVMIGRGAVSDPFLALRIRGQ 240
>UniRef50_A1SX05 Cluster: Dihydrouridine synthase, DuS; n=3;
Alteromonadales|Rep: Dihydrouridine synthase, DuS -
Psychromonas ingrahamii (strain 37)
Length = 314
Score = 80.2 bits (189), Expect = 1e-13
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 305 QICGNNPYIITKVA-QLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC 363
Q+ G NP + + A Q + + D IDLN GCP + K GG+ ++ AL V
Sbjct: 68 QLLGQNPQCLAENAHQAISIGS--DGIDLNFGCPAKTVNKNKGGAVLLKSPEALYQIVTE 125
Query: 364 ASKLLSI--PFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEY 421
K + + +VK+R G Y+DK + + GA + VH R++ Y + W +
Sbjct: 126 VRKAVPVFQTLSVKIRLG-YEDKSLAIENAQAIQAAGADELAVHARTKAEGYRPPAHWHW 184
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
I A T PV NGDIFS +D +I + +MIGRGAL P + IK
Sbjct: 185 IAKIKDAIT-IPVTANGDIFSVDDAKRCMEITGCER-LMIGRGALATPNLAQAIK 237
>UniRef50_O95620 Cluster: tRNA-dihydrouridine synthase 4-like; n=28;
Eumetazoa|Rep: tRNA-dihydrouridine synthase 4-like -
Homo sapiens (Human)
Length = 317
Score = 80.2 bits (189), Expect = 1e-13
Identities = 59/237 (24%), Positives = 114/237 (48%), Gaps = 9/237 (3%)
Query: 250 SPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGN 309
+P+ L FR + +++ D+ M + +K +K + ++ + Q N
Sbjct: 32 APMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAAN 91
Query: 310 NPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLS 369
+ +++ A+++ + ID+N GCP +G G+ ++++ ++ V+ +
Sbjct: 92 DARLLSDAARIVCPYA--NGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149
Query: 370 IP-FTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQA 428
P F+V ++ ++ D K T + K G S ITVHGR+ E R+ + ++ I+ +
Sbjct: 150 TPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERH-QPVHYDSIKIIKEN 208
Query: 429 ATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE---QKIWD 482
+ PV NGDI S ++ + +I T GVM+ RG L P +F +E + IWD
Sbjct: 209 MS-IPVIANGDIRSLKEAENVWRITGT-DGVMVARGLLANPAMFAGYEETPLKCIWD 263
>UniRef50_Q9VY45 Cluster: CG1434-PA; n=6; Endopterygota|Rep:
CG1434-PA - Drosophila melanogaster (Fruit fly)
Length = 473
Score = 79.8 bits (188), Expect = 2e-13
Identities = 71/256 (27%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 236 RERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQ------- 288
+ R+ +D+ NKL L+P+ VG LP R + E GAD+ E + L+K +++
Sbjct: 15 KTRQRLDYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDIKLIKSIRRPNPALGT 74
Query: 289 -------EWALVKR---HETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPI 338
+ +V R ET L Q+ ++ V +LLQ ++ +D+N+GCP
Sbjct: 75 VDFVDPSDGTIVFRTCAQETSRLV-LQMGTSDAGRALAVGKLLQR--DISGLDINMGCPK 131
Query: 339 DLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWG 398
+ K G G+ ++ +R L IP T K+R + D + T +V K++ G
Sbjct: 132 EFSIKGGMGAALLADPDKAAHILRTLCSGLDIPVTCKIR--ILPDVEGTIDLVQKLAATG 189
Query: 399 ASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPT--V 456
+ I +H R+R+ R + E + AQ A P+ NG + Y ++RK
Sbjct: 190 IAAIGIHARTRDERPQHPAHPEVLRAVAQ-AVDIPIIANGGSKNMHCYDDLRKFQMECGA 248
Query: 457 KGVMIGRGALIKPWIF 472
VM+ R A I IF
Sbjct: 249 DSVMVARAAQINVSIF 264
>UniRef50_Q8A2H9 Cluster: Putative nifR3 family TIM-barrel enzyme
with dihydrouridine synthase domain; n=6;
Bacteroidales|Rep: Putative nifR3 family TIM-barrel
enzyme with dihydrouridine synthase domain - Bacteroides
thetaiotaomicron
Length = 314
Score = 79.4 bits (187), Expect = 2e-13
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 5/190 (2%)
Query: 330 IDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHT 389
+D+N+GCP L+ K+ GSG++ ++ + ++ I F+VKMR G Q +
Sbjct: 91 VDINLGCPFPLLAKRHNGSGILPYPEEVKALLSIVTRYPQISFSVKMRLGWEQPDECL-A 149
Query: 390 IVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEM 449
+ P +++ IT+H R + Y D + + P+ NGDI + ED +
Sbjct: 150 LAPILNDLPLRQITMHPRLGKQGYKGEVDLQGFSAFREVC-QLPLVYNGDIHNLEDIQRI 208
Query: 450 RKIAPTVKGVMIGRGALIKPWIFNEIKEQK-IWDISSKDRFEILKK--YSNYGLEHWGSD 506
P++ G+MIGRG L P + E KE + + +DR + + K Y+NY + G +
Sbjct: 209 STQFPSLAGIMIGRGLLANPALALEYKENRTLAPDEMRDRLKSMHKSVYNNYDVLLEGGE 268
Query: 507 TQGVESTRRF 516
Q + + F
Sbjct: 269 GQLLTKMKTF 278
>UniRef50_A7AQM0 Cluster: Dihydrouridine synthase, putative; n=1;
Babesia bovis|Rep: Dihydrouridine synthase, putative -
Babesia bovis
Length = 355
Score = 79.4 bits (187), Expect = 2e-13
Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 8/229 (3%)
Query: 250 SPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGN 309
+P+ LPFR +C+ + D+T M ++ K + + + AQ+CG+
Sbjct: 17 APMVNQSELPFRLLCRRYNVDLTYTPMLHGRIFVENEKYRAVHFQTSDDDRPLIAQVCGD 76
Query: 310 NPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETS-VRCASKLL 368
+ IT+ A+LL+ + +DLN+GCP I K G + P L T V ++ +
Sbjct: 77 DAGTITQAARLLKGHVSA--VDLNLGCP-QAIAKDGHYGSFLLDEPDLVTGIVSRVTREV 133
Query: 369 SIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTK--SSDWEYIETCA 426
I T K+R + T + + G +TVHGR R + T ++DW+ I
Sbjct: 134 GIAVTCKIRKVDKDSLQSTLNLCYSLEQSGCKALTVHGRHRSEKGTNVGAADWDAIR-II 192
Query: 427 QAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
++ PV NG I ++ D VE VM L +P++F+ I
Sbjct: 193 KSRLRIPVIANGGIETFAD-VERCLSYTGADAVMSSESLLERPYLFSGI 240
>UniRef50_A3JG66 Cluster: Putative uncharacterized protein; n=3;
Gammaproteobacteria|Rep: Putative uncharacterized
protein - Marinobacter sp. ELB17
Length = 335
Score = 78.6 bits (185), Expect = 4e-13
Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 17/227 (7%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G++P+++ + E +D+N GCP + K GG +M R P L + A
Sbjct: 68 QLLGSDPHMMARHGAKAAELGATQ-VDINFGCPAKTVNKHKGGCVLM-REPELMHEITAA 125
Query: 365 SKLL---SIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEY 421
+ I T KMR G Y D+ + + GA I +H RS+ Y + WE
Sbjct: 126 VRQAVPADILVTAKMRLG-YDDRSMGVACAQALDAAGAGEIVIHARSKTDGYKPPAYWEE 184
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE---- 477
I A+ A V NGDIF+ DY R+++ VMIGRG + +P + +I+
Sbjct: 185 IAK-AREAVKAKVIANGDIFTVADYWRCREVS-GCDDVMIGRGLVARPDLARQIRASQRG 242
Query: 478 QKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFL 524
+ I ++ + ++++Y Y L+ W D T R + +W+++L
Sbjct: 243 ESIELMTWPEALALVQEY-GYALQGWLEDKY---VTGR-IKQWMNYL 284
>UniRef50_Q9XVN8 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 527
Score = 78.6 bits (185), Expect = 4e-13
Identities = 73/281 (25%), Positives = 128/281 (45%), Gaps = 21/281 (7%)
Query: 226 TDEDLIKLLPRERKTIDWNNKL--YLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLL 283
+DE + K L ++T++ N ++ L+P+ L FR +++GA +T M +
Sbjct: 53 SDETIEKNLRFWKETLE-NQRITKVLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFV 111
Query: 284 KG---LKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDL 340
+ ALVK Q C N +L+++ D +DLN+GCP +
Sbjct: 112 NDGTYRRNSLALVKADRP---LVVQFCANKVDTFLAACRLVED--VCDGVDLNLGCP-QM 165
Query: 341 IYKKGG-GSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGA 399
+ K+G GS + + + V +P + K+R V D++ T ++ + GA
Sbjct: 166 VAKRGRYGSWLQDEVDLICEMVSAVRDYCRLPISCKIR--VRDDRQQTVEYAKRLVDAGA 223
Query: 400 SLITVHGRSREAR--YTKSSDWEYIETCAQA-ATPCPVYGNGDIFSYEDYVEMRKIAPTV 456
+++TVHGR+R+ + T +DW I +A + PV NG+I + VE A
Sbjct: 224 TMLTVHGRTRDMKGAETGLADWSRIRDVVEAVGSRVPVMANGNI-QFPGDVERCMQATGA 282
Query: 457 KGVMIGRGALIKPWIFNEIKEQ-KIWDISSKDRFEILKKYS 496
+M G L P IF++ W I++ + E KK++
Sbjct: 283 VAIMSAEGLLYNPLIFDDANAHVDTWKIAA-EYLEYAKKFN 322
>UniRef50_P53759 Cluster: tRNA-dihydrouridine synthase 1; n=11;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 423
Score = 78.6 bits (185), Expect = 4e-13
Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 13/232 (5%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMA---LCESLLKGLKQEWALVKRHETEDLFGAQ 305
++P+ L +R + + +GA + M L + K + W+ + + Q
Sbjct: 33 VAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDGSSVDRPLVVQ 92
Query: 306 ICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCAS 365
C N+P + A+L+++ + D +DLN+GCP + K GS +M + +
Sbjct: 93 FCANDPEYLLAAAKLVED--KCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLINTLH 150
Query: 366 KLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKS--SDWEYIE 423
K L +P T K+R ++ D + + + + GA +TVHGR RE + K+ ++WE I+
Sbjct: 151 KNLKVPVTAKIR--IFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANWETIK 208
Query: 424 TCAQAATPCPV-YGNGDIFSYEDYVE-MRKIAPTVKGVMIGRGALIKPWIFN 473
V + NG+I ED M I VM G L P +FN
Sbjct: 209 YLRDNLPKETVFFANGNILYPEDISRCMEHIG--ADAVMSAEGNLYNPGVFN 258
>UniRef50_A6GHV6 Cluster: Dihydrouridine synthase family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Dihydrouridine
synthase family protein - Plesiocystis pacifica SIR-1
Length = 321
Score = 78.2 bits (184), Expect = 6e-13
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMH---RLPALETSV 361
Q+ G P+ + + A+ IDLN GCP + GG+ ++ R+ A+ +V
Sbjct: 65 QLLGGEPHWMARAAETAVA-LGAPGIDLNFGCPAKTVNSSDGGATLLKDPCRVEAVTRAV 123
Query: 362 RCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEY 421
R A +P TVK+R G ++D I GAS +T+HGR+R Y D+E
Sbjct: 124 RAAVPA-ELPVTVKIRVG-WEDPSPVVEIARAAEAGGASWLTIHGRTRRQLYKPPVDYEA 181
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
I AQAA V NGD+F E + + MIGRGA+ +P +F
Sbjct: 182 IGR-AQAAVSMAVVANGDLFGVPSLFEAAQRSGCT-AFMIGRGAMGRPELF 230
>UniRef50_Q884C6 Cluster: tRNA-dihydrouridine synthase C; n=8;
Proteobacteria|Rep: tRNA-dihydrouridine synthase C -
Pseudomonas syringae pv. tomato
Length = 317
Score = 78.2 bits (184), Expect = 6e-13
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 6/173 (3%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G++P + + A E +DLN GCP + + GG+ ++ L T V
Sbjct: 68 QLLGSDPVCLAENAAFACE-LGAPVLDLNFGCPAKTVNRSRGGAILLKEPELLHTIVSQV 126
Query: 365 SKLL--SIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI 422
+ + IP T KMR G Y++ +++ GA+ I VH R++ Y + WE+I
Sbjct: 127 RRAVPKDIPVTAKMRLG-YENTDGALDCARALADGGAAQIVVHARTKVDGYKPPAHWEWI 185
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
Q PV NG+I++ ED+ R+I + +MIGRG + +P + +I
Sbjct: 186 AR-IQEVVKVPVVANGEIWTVEDWRRCREIC-GARDIMIGRGLVARPDLARQI 236
>UniRef50_Q7RX85 Cluster: Putative uncharacterized protein
NCU00065.1; n=3; Pezizomycotina|Rep: Putative
uncharacterized protein NCU00065.1 - Neurospora crassa
Length = 629
Score = 77.4 bits (182), Expect = 1e-12
Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 8/171 (4%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q C N+P + A+L+ D +DLN+GCP + + GS + + +
Sbjct: 140 QFCANDPAYLLSAAKLVAPYC--DAVDLNLGCPQGIAKRGQYGSFLQENQELIFELINTL 197
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREAR--YTKSSDWEYI 422
K L IP T K+R + K+ T + GAS++TVHGR RE + T +DWEYI
Sbjct: 198 HKELDIPVTAKIR--ILDTKEATLKYAQNVLRAGASILTVHGRRREQKGHQTGLADWEYI 255
Query: 423 ETCAQ-AATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
+ ++ NG+I + D +E A GVM G L P +F
Sbjct: 256 RYLRENLPKETVIFANGNILQHAD-LEKCLAATGADGVMSAEGNLSDPGLF 305
>UniRef50_Q06063 Cluster: tRNA-dihydrouridine synthase 4; n=10;
Saccharomycetales|Rep: tRNA-dihydrouridine synthase 4 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 367
Score = 77.4 bits (182), Expect = 1e-12
Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 5/224 (2%)
Query: 251 PLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNN 310
P+ LPFR++C+E+ D+ M L ++ + + + + Q+ NN
Sbjct: 45 PMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPLIVQVGVNN 104
Query: 311 PYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSI 370
+ K +++ D I +N GCPI ++G G +++ L + V
Sbjct: 105 VADLLKFVEMVAPYC--DGIGINCGCPIKEQIREGIGCALIYNSDLLCSMVHAVKDKYGD 162
Query: 371 PFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAAT 430
++ + +++ T + K+ + G IT+HGR+R R ++ ++ + I+ + +
Sbjct: 163 KLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRSSQPANLDAIKYIIENIS 222
Query: 431 P--CPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
PV NGD F D + K GVM RG L P +F
Sbjct: 223 DKNVPVIANGDCFKLSDLERITKYT-GAHGVMAVRGLLSNPALF 265
>UniRef50_Q6MNE9 Cluster: Nitrogen regulation protein nifR3; n=1;
Bdellovibrio bacteriovorus|Rep: Nitrogen regulation
protein nifR3 - Bdellovibrio bacteriovorus
Length = 352
Score = 77.0 bits (181), Expect = 1e-12
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 4/175 (2%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
QI GN I + + L E + ID+N+GCP+ K G +M VR
Sbjct: 80 QILGNEEDAIAESVKRLVE-WGAEAIDINMGCPVQKALKHNYGVALMGDPAYAAEVVRMT 138
Query: 365 SKLLSIPFTVKMR-TGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIE 423
K ++P +VK+R G ++ T V + GA+ + +H R+ + ++DWE I+
Sbjct: 139 VKNSTVPVSVKLRAVGSTKEFDELLTFVSGLRQSGAAWVCLHPRTAAQKRRGNADWEQIK 198
Query: 424 TCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQ 478
A PV GNGD+ +Y+D + M K M GRG +PW+ ++ E+
Sbjct: 199 Q-LHKAVDFPVIGNGDVQTYDDAINMLK-ETGCDMAMAGRGLAARPWMMWQLGEE 251
>UniRef50_A4E892 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 317
Score = 76.2 bits (179), Expect = 2e-12
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 330 IDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHT 389
++LN+GCP + KG GSG + L LE + + +P +VK R G+ D +
Sbjct: 89 VNLNLGCPSGTVVAKGKGSGFLRNLDELEAFLSDVCERSPLPVSVKTRLGLENDDEY-ER 147
Query: 390 IVPKMSNWGASLITVHGRSREARYTKSSDWE-YIETCAQAATPCPVYGNGDIFSYEDYVE 448
++ + + VH R ++ RYT E Y ET +A P PV NGDIF ED
Sbjct: 148 VLDLYCRMPLAELIVHPRVQKDRYTGLPRKEFYGETLERA--PFPVAYNGDIFDLEDMDA 205
Query: 449 MRKIAPTVKGVMIGRGALIKPWIFNEIK 476
+ + P + VM+GRG L P + +K
Sbjct: 206 LVEAYPGTRHVMLGRGLLANPALARMVK 233
>UniRef50_Q6AKJ6 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 354
Score = 75.8 bits (178), Expect = 3e-12
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 328 DFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKIT 387
D +D+N+GCP + + G G+ + + V A + + + K+R G +
Sbjct: 125 DGVDINLGCPAPSVRRGGAGAALAEDWDRVRDIVSSARRHTDLTLSAKIRVGHVGKEAHL 184
Query: 388 HTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYV 447
+ G L+ VH R ++ + W+ + + P++ NG IFS +D
Sbjct: 185 LDFCKMLEAEGVDLLAVHARYHGEKFCRKPRWQLLAPICEQLD-IPIFANGGIFSVDDAR 243
Query: 448 EMRKIAPTVKGVMIGRGALIKPWIFNEIKEQ 478
+++ G+M+GRGA+ +PW+FNEI +
Sbjct: 244 RCLELSGAA-GLMLGRGAVERPWLFNEIARE 273
>UniRef50_Q9XWJ9 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 436
Score = 75.8 bits (178), Expect = 3e-12
Identities = 68/250 (27%), Positives = 116/250 (46%), Gaps = 28/250 (11%)
Query: 243 WNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLK---QEWALVKRHETE 299
+ NK L+P+ G P R +C ++GAD+ E + + L++ + + + +
Sbjct: 5 YRNKKILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRVVNEALGTIDYRNGD 64
Query: 300 DLF--------GA---QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGS 348
D+ G QI N+ K+AQ++ + ++ ID+N+GCP G G+
Sbjct: 65 DIILRLAPEEKGRCILQIGTNSGEKAAKIAQIVGD--DVAGIDVNMGCPKPFSIHCGMGA 122
Query: 349 GMM---HRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVH 405
++ ++ + TS++ A+K +P T K+R V D + T +V ++ S + VH
Sbjct: 123 ALLTQTEKIVDILTSLKSAAK---VPVTCKIR--VLDDPEDTLKLVQEIEKCRVSALGVH 177
Query: 406 GRSREARYTKSSDWEYIETCAQAATPCPVYGNG---DIFSYEDYVEMRKIAPTVKGVMIG 462
GR R+ R + I AQA PV NG +I Y D+ + + + T MI
Sbjct: 178 GRRRDERQPDKCRIDEIRDVAQAVQSIPVISNGLSDEIEQYSDFEKYQLLTET-SSTMIA 236
Query: 463 RGALIKPWIF 472
R AL P IF
Sbjct: 237 RKALSTPSIF 246
>UniRef50_Q1JWD3 Cluster: Dihydrouridine synthase, DuS; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: Dihydrouridine
synthase, DuS - Desulfuromonas acetoxidans DSM 684
Length = 320
Score = 75.4 bits (177), Expect = 4e-12
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 9/185 (4%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G+ + + AQ++ + ++LN+GCP G M+ + +R
Sbjct: 74 QLIGHRSESLAEAAQIVADLGGAH-VNLNMGCPFGRTTTGKTGGAMLQEPEKIGDCLRAI 132
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
+VK+R G Y D + ++P +G I +H R+ +Y +D +
Sbjct: 133 RAAFHGSVSVKVRAG-YDDPEQIFDLLPVFEKYGVDFIVLHPRTVVQKYADDAD-HAVTA 190
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTV--KGVMIGRGALIKPWIFNEIKEQKIW- 481
AAT PV NGD+FS E R++A G+M+GRGA+ PW+F I+ + +
Sbjct: 191 RVVAATALPVIANGDLFSEE---RARQVAEQTGAAGLMLGRGAIADPWLFQRIRGRGVEP 247
Query: 482 DISSK 486
DIS +
Sbjct: 248 DISQR 252
>UniRef50_A6PMB8 Cluster: Dihydrouridine synthase, DuS; n=1;
Victivallis vadensis ATCC BAA-548|Rep: Dihydrouridine
synthase, DuS - Victivallis vadensis ATCC BAA-548
Length = 304
Score = 75.4 bits (177), Expect = 4e-12
Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 6/176 (3%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ GN P +I A E I+LN GCP + G G G + L + T+V
Sbjct: 68 QLMGNRPEVIAAAAARFMELGAAG-INLNFGCPSRQVTSGGAGGGALRDLAGMVTTVETV 126
Query: 365 SKLL-SIPFTVKMRTGVYQDKKITHTIVPKMSNWG-ASLITVHGRS-REARYTKSSDWEY 421
K + + P +VK+RTG ++ I+P ++ G S +H R+ RE S E
Sbjct: 127 KKAIPASPLSVKLRTG-WESPDEMQRILPALAETGCVSAFFLHFRTVREQYRPVSGREER 185
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
E + A P PV NGDI S +D E+ + GVM RG L P + N I++
Sbjct: 186 FEAGLRLAAPVPVVLNGDIDSPDDASELLE-RTGAAGVMCARGWLRDPLLLNRIRQ 240
>UniRef50_Q127F8 Cluster: Dihydrouridine synthase, DuS; n=3;
Proteobacteria|Rep: Dihydrouridine synthase, DuS -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 344
Score = 74.9 bits (176), Expect = 5e-12
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 8/176 (4%)
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMM---HRLPALETS 360
AQ+ G++P + + A L IDLN GCP ++ + GGG+ ++ L A+ ++
Sbjct: 73 AQLLGSDPACMAENAARLATLGPAG-IDLNFGCPAAVVNRHGGGASLLKEPETLLAIVSA 131
Query: 361 VRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWE 420
VR A +P + KMR G D + + ++ GA + VH R++ Y + WE
Sbjct: 132 VRRAVP-AGMPVSAKMRLGYNDDSRAVECAL-AIAEGGAGELVVHARTKAQAYKPPAYWE 189
Query: 421 YIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
I +AA PV NG+I++ +D R+ A +MIGRGA+ P + IK
Sbjct: 190 RIAD-IRAAVQIPVVANGEIWTVDDARRCRE-ASGCSMLMIGRGAVADPGLGLAIK 243
>UniRef50_UPI00015B403F Cluster: PREDICTED: similar to MGC79829
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to MGC79829 protein - Nasonia vitripennis
Length = 346
Score = 74.5 bits (175), Expect = 7e-12
Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 5/231 (2%)
Query: 250 SPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGN 309
+P+ LPFR + +++ D+ M L +S ++ K + +E + Q
Sbjct: 19 APMVRYSKLPFRTLVRKYDCDICFTPMILADSFVQSSKARDSEFSTNEGDSPLIVQFAAK 78
Query: 310 NPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLS 369
+ +++ + + +DLN GCP K G G+ ++ + ++ V +
Sbjct: 79 EVDDFVEATEMVAPYS--NGVDLNCGCPQRWALKDGYGADLLTKPQLVKELVSNVRNRIP 136
Query: 370 IPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAA 429
PFTV ++ + +D K T + + G S +TVH R+ + R + D + ++ ++
Sbjct: 137 KPFTVSVKIRILKDIKKTIEFSRAIEHAGVSFLTVHARTPDMR-NEPIDLDSLK-LVRSC 194
Query: 430 TPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKI 480
P+ NG++ S+ED + + GVM+ G L P IF+ K +
Sbjct: 195 VHLPMIANGNVRSFEDAKTLYE-ESKCNGVMVAGGILTNPAIFSGYKNTPV 244
>UniRef50_A7T8A1 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 137
Score = 74.5 bits (175), Expect = 7e-12
Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 4/63 (6%)
Query: 364 ASKLLSIPFTVKMRTGVYQDKKIT---HTIVPKMSNWGASLITVHGRSREARYTKSSDWE 420
A +++ IP TVK+R G++ DKK T H +V + +WG ++T+HGRSRE RYTKS+DW+
Sbjct: 53 AYQVIDIPLTVKIRAGIH-DKKYTWNAHKLVGNLRDWGTDMVTIHGRSREQRYTKSADWD 111
Query: 421 YIE 423
YI+
Sbjct: 112 YIK 114
>UniRef50_Q5HJT5 Cluster: Probable tRNA-dihydrouridine synthase;
n=41; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
- Staphylococcus aureus (strain COL)
Length = 328
Score = 74.5 bits (175), Expect = 7e-12
Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 23/279 (8%)
Query: 249 LSPLTTVGNLPFRRICKEFGA-DVTCGEMALCESLL--KGLKQEWALVKRHETEDLFGAQ 305
L+P+ V ++ FR + E DV E ES +G+ + E E A
Sbjct: 16 LAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQPMVAH 75
Query: 306 ICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCAS 365
I G+ P + + L + IDLN+GCP+ + KKG GSG++ R P + + A+
Sbjct: 76 IWGDKPEQFRETSIQLAK-MGFKGIDLNMGCPVANVAKKGKGSGLILR-PDVAAEIIQAT 133
Query: 366 KLLSIPFTVKMRTGVYQDKK----ITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEY 421
K +P +VK R G Y+ + + H ++N +++H R+R+ + WE
Sbjct: 134 KAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIAN-----LSIHLRTRKEMSKVDAHWEL 188
Query: 422 IETCA----QAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
IE + A + NGDI + +E+ + + GVMIGRG P+ F KE
Sbjct: 189 IEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAE-KYGIDGVMIGRGIFHNPFAFE--KE 245
Query: 478 QKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRF 516
+ + +SK+ ++L+ + + ++ + + +S RRF
Sbjct: 246 PR--EHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRF 282
>UniRef50_Q9VJ06 Cluster: CG10495-PA; n=2; Sophophora|Rep:
CG10495-PA - Drosophila melanogaster (Fruit fly)
Length = 396
Score = 73.7 bits (173), Expect = 1e-11
Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 6/227 (2%)
Query: 250 SPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGN 309
+P+ L FRR+ + G + M + +S+ K + AQ
Sbjct: 28 APMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQFAAK 87
Query: 310 NPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLS 369
+P AQL+ +D IDLN GCP KG G GM+ + + V+ + L
Sbjct: 88 DPTEFVTSAQLIYPY--VDGIDLNCGCPQSWAMAKGYGCGMLRQPELVHQVVQEVRRTLP 145
Query: 370 IPF--TVKMR-TGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCA 426
F +VKMR G + + T + ++ + G + +T+HGR+ +++K + +
Sbjct: 146 GDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTPAQKHSKDTLDIPAMSQV 205
Query: 427 QAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFN 473
+ + P+ NG++ SY D +M + GVM RG L P +FN
Sbjct: 206 RQSLQIPLIVNGNVESYRDACDMHE-QTGAAGVMAARGLLANPALFN 251
>UniRef50_Q6AJ40 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 318
Score = 73.3 bits (172), Expect = 2e-11
Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Query: 330 IDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHT 389
I+ N+GCP ++ KK GSGM+ + + + + ++K R G Y + T
Sbjct: 92 INWNLGCPAPMVAKKKRGSGMLAHPDLIVEFLEEVLPQIPVKLSIKTRLG-YSNTAQTKE 150
Query: 390 IVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEM 449
++P++ + + I +H R + Y ++D + C Q + Y NGDI + E + E+
Sbjct: 151 LLPRLDQFPLTEIIIHARLGKQMYKGTTDPDTFAECLQLSQHRIAY-NGDITTLEHFHEL 209
Query: 450 RKIAPTVKGVMIGRGALIKPWIFNEIK 476
+ P V+ MIGRGAL P++ IK
Sbjct: 210 QTRFPQVEHWMIGRGALADPFLAERIK 236
>UniRef50_Q9NX74 Cluster: tRNA-dihydrouridine synthase 2-like; n=27;
Eumetazoa|Rep: tRNA-dihydrouridine synthase 2-like -
Homo sapiens (Human)
Length = 493
Score = 73.3 bits (172), Expect = 2e-11
Identities = 75/281 (26%), Positives = 127/281 (45%), Gaps = 37/281 (13%)
Query: 243 WNNKLYLSPLTTVGNLPFRRICKEFGADVT-CGE-----MALCESLLKGLKQEWALV--- 293
++NKL L+P+ VG LP R + ++GAD+ C E M C+ ++ + V
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 294 --------KRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKG 345
+R + +F Q+ ++ VA+L++ ++ ID+N+GCP K G
Sbjct: 70 DRVVFRTCEREQNRVVF--QMGTSDAERALAVARLVEN--DVAGIDVNMGCPKQYSTKGG 125
Query: 346 GGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVH 405
G+ ++ +E + K P T K+R + + T ++V ++ G + I VH
Sbjct: 126 MGAALLSDPDKIEKILSTLVKGTRRPVTCKIR--ILPSLEDTLSLVKRIERTGIAAIAVH 183
Query: 406 GRSREARYTKSSDWEYIETCAQAATPCPVYGNG----DIFSYEDYVEMRKIAPTVKGVMI 461
GR RE R E I+ A + PV NG I Y D + R+ A VM+
Sbjct: 184 GRKREERPQHPVSCEVIKAIADTLS-IPVIANGGSHDHIQQYSDIEDFRQ-ATAASSVMV 241
Query: 462 GRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEH 502
R A+ P IF +KE + E+++KY Y +++
Sbjct: 242 ARAAMWNPSIF--LKE------GLRPLEEVMQKYIRYAVQY 274
>UniRef50_A7AAN4 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Parabacteroides merdae ATCC 43184
Length = 320
Score = 72.1 bits (169), Expect = 4e-11
Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 5/220 (2%)
Query: 292 LVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMM 351
LV T Q+ +P ++A L +E+ D+N+GCP + ++ G+G++
Sbjct: 54 LVPEANTSASLVPQMIAASPEEFRRIAGLFRESGYRR-ADINLGCPFPMQARQHRGAGIL 112
Query: 352 HRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREA 411
++ + + I F+VK+R G + + ++P ++ + +T+H R
Sbjct: 113 PYPDEVKVLLETIFEFPEIQFSVKLRLG-WDSPEEAQALLPFLNGLPLTHLTLHPRIGTQ 171
Query: 412 RYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWI 471
+Y +D + T P++ NGDI + D + P +KG+MIGRG L PW+
Sbjct: 172 QYKGKTDLSAFSRFYDSCT-LPLFYNGDIRTLPDIRSLTGRFPRLKGIMIGRGLLSSPWL 230
Query: 472 FNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVE 511
E ++++++ E L + L + S +G E
Sbjct: 231 ATEYISDT--PLTAQEKIEKLSAFHALLLAGYSSRLEGGE 268
>UniRef50_Q73RG6 Cluster: Dihydrouridine synthase, putative; n=1;
Treponema denticola|Rep: Dihydrouridine synthase,
putative - Treponema denticola
Length = 337
Score = 71.7 bits (168), Expect = 5e-11
Identities = 73/261 (27%), Positives = 115/261 (44%), Gaps = 20/261 (7%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGA-DVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
KL +P+ + + FRR+ F D EM S + G E + + + +
Sbjct: 2 KLISAPMAAITHSAFRRLAACFKEPDEYFSEMIHAPSAISGGGFEKWYFRANPSPEKLVW 61
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETS---- 360
QI + LL + IDLN+GC I G G M + P ET+
Sbjct: 62 QITSPDEKSAAACVPLLLQYGGFG-IDLNMGCCAPQIVNTGAGFAWMKK-PLSETASLVS 119
Query: 361 -VRCASKLLS----------IPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSR 409
V+ A L I +VK+R G ++ + + + G LIT+H R++
Sbjct: 120 KVKKAVLLYDEQKAGPQTEPIRLSVKLRLGEEENYDRLLSFCKMLVSEGVDLITLHPRTQ 179
Query: 410 EARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKP 469
+ +Y++ EY A + PVYGNGDI S E ++ P G MIGR A+ KP
Sbjct: 180 KQKYSRPCKHEYTARLASDLS-VPVYGNGDINSLETLEKIASKYPCA-GWMIGRAAVQKP 237
Query: 470 WIFNEIKEQKIWDISSKDRFE 490
WIF E+ + + + +++D+ E
Sbjct: 238 WIFYELSKGILKNGTAEDKDE 258
>UniRef50_Q4D174 Cluster: Dihydrouridine synthase (Dus), putative;
n=2; Trypanosoma cruzi|Rep: Dihydrouridine synthase
(Dus), putative - Trypanosoma cruzi
Length = 548
Score = 71.7 bits (168), Expect = 5e-11
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 7/177 (3%)
Query: 297 ETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPA 356
ET+ Q CGN+ + A+ ++++ E +D+N+GCP + + GS +M
Sbjct: 177 ETDHPLFVQFCGNDADTLLAAARHVEDDCEA--VDVNLGCPQGIARRGHYGSFLMEDWDR 234
Query: 357 LETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKS 416
+ + C + L +P T KMR V+ D +T + + G +++ VHGR+R +
Sbjct: 235 VHNILHCLAVELRVPVTAKMR--VFDDDALTLKYAEMLRDTGIAVLCVHGRTRHNK-RGI 291
Query: 417 SDWEYIETCAQ-AATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
+D E I + PV GNG++ ++ED V A G M L P +F
Sbjct: 292 ADMEKIRRVREHLRGSIPVIGNGNVLTFED-VRRNMSATMTDGYMCAEPLLWDPRLF 347
>UniRef50_A6VYA3 Cluster: TIM-barrel protein, yjbN family; n=8;
Proteobacteria|Rep: TIM-barrel protein, yjbN family -
Marinomonas sp. MWYL1
Length = 341
Score = 70.9 bits (166), Expect = 9e-11
Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 16/235 (6%)
Query: 275 EMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNI 334
EM +LL+G E ++ E E Q+ G++ + K A++ E D ++LN+
Sbjct: 49 EMVTTGALLQGNHPE-RFLRYDECEHPIALQLGGSDAVALGKCAKMA-EQAGFDEVNLNV 106
Query: 335 GCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGV--YQDKKITHTIVP 392
GCP D + G+ +M ++ ++R SIP T+K R G+ +D + V
Sbjct: 107 GCPSDRVQNSLIGACLMAHPDKVKEAMRAMQDNCSIPVTIKHRIGLDDQEDYSVVRDFVG 166
Query: 393 KMSNWGASLITVHGRS--------REARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYE 444
++ G + VH R+ +E R + Y+ + + NG I + +
Sbjct: 167 DVATTGVTTFIVHARNAILEGLSPKENREVPPLKYHYVHQLKKDFPDLEIIINGGIKTLD 226
Query: 445 DYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKI-WDISSKDRFEILKKYSNY 498
E ++ V GVM+GR A PWI +++ E DR+E L+ + Y
Sbjct: 227 ---ECKEQLAHVDGVMVGREAYHNPWILSQVDEVLFGGQPLVNDRYEALEAFVPY 278
>UniRef50_Q5KPM6 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 407
Score = 70.9 bits (166), Expect = 9e-11
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 8/172 (4%)
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC 363
AQ N + A+L+ + +D IDLN GCP Y +G G ++ + + VR
Sbjct: 154 AQFASPNAKSLADAAELI--SPYVDGIDLNCGCPQRWAYNEGIGCALLRKPELVRDMVRG 211
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDW---E 420
+ + V ++ + +++ T ++ G S +T+HGR+R T + +
Sbjct: 212 VKDRMGWGWPVSIKIRIDSEQEKTEQLISNALQAGISHLTIHGRTRHQPSTDPVNLPGIK 271
Query: 421 YIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
+ C + PC NGD++ ED +MR + V+GVM RG L P +F
Sbjct: 272 FAVDCVKGEVPC--VANGDVWELEDARQMR-LHTGVQGVMAARGLLANPALF 320
>UniRef50_Q4WRF0 Cluster: Dihydrouridine synthase family protein,
putative; n=9; Pezizomycotina|Rep: Dihydrouridine
synthase family protein, putative - Aspergillus
fumigatus (Sartorya fumigata)
Length = 541
Score = 70.5 bits (165), Expect = 1e-10
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 8/173 (4%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q C N+P + A+ + D +DLN+GCP + K G+ + + +
Sbjct: 130 QFCANDPDDFLEAARHVAPYC--DAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLINRL 187
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREAR--YTKSSDWEYI 422
K L IP T K R + + K+ T + + GAS+IT+HGR+RE + T +DW YI
Sbjct: 188 HKELPIPVTAKFR--IQESKEKTLEYAKMILSAGASIITLHGRTREQKGHNTGLADWSYI 245
Query: 423 ETCAQAATP-CPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
P ++ NG+ +++D +E A GVM G L P IF++
Sbjct: 246 RYLRDNLPPETVIFANGNNLNHDD-LERCLEATGADGVMSAEGNLSDPAIFSK 297
>UniRef50_UPI0000499E32 Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 339
Score = 70.1 bits (164), Expect = 2e-10
Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 9/229 (3%)
Query: 244 NNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHET-EDLF 302
N + L+P+ +L FR + + G ++ M L + ++ +V + E
Sbjct: 21 NPQNILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKMFVESKVYRNEVVNSLDPKEQPI 80
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
QI G++ + + A+ LQ + D ID+N+GCP + K G+ + + V
Sbjct: 81 IIQIVGSDANEMARTAKFLQ--SYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEIVN 138
Query: 363 CASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKS--SDWE 420
+ ++IP K+R V++D++ T V + G I VHGR+ + + + + W
Sbjct: 139 AVIEAVNIPVYCKVR--VFEDEEKTMRFVEMLQECGIWGIAVHGRTITEKQSMNYHARWN 196
Query: 421 YIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKP 469
YI + PV NG++ S E E +K+ + G MIG G L+ P
Sbjct: 197 YIAKIKE-RLKIPVIANGEMRSREKIEECKKVTHS-DGYMIGFGLLMNP 243
>UniRef50_Q1N033 Cluster: Putative uncharacterized protein; n=1;
Oceanobacter sp. RED65|Rep: Putative uncharacterized
protein - Oceanobacter sp. RED65
Length = 321
Score = 70.1 bits (164), Expect = 2e-10
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 6/174 (3%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G++P + + A E +++N GCP + + GG+ ++ + T +
Sbjct: 68 QLLGSDPVAMAENACRAAE-LGAPVVNINFGCPSRFVNGRCGGAYLLQFPDQIHTILESV 126
Query: 365 SKLL--SIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI 422
K L +P T KMR G ++D + M + G I +H R++ Y + W I
Sbjct: 127 RKALPEHVPLTAKMRLG-FKDDALALANAQAMESAGVRDICIHARTKVQGYRPPAHWHQI 185
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIK 476
+ Q P+ NG+I++ DY E K A + VM+GRGA+ P + IK
Sbjct: 186 KNIKQ-QVKVPIIANGEIWNRRDY-EACKAASHCEHVMLGRGAVADPELAATIK 237
>UniRef50_Q0IFC6 Cluster: tRNA-dihydrouridine synthase; n=2;
Culicidae|Rep: tRNA-dihydrouridine synthase - Aedes
aegypti (Yellowfever mosquito)
Length = 391
Score = 70.1 bits (164), Expect = 2e-10
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 8/244 (3%)
Query: 231 IKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEW 290
++ L RE + D K+ +P+ L FR + + +G D+T M + +S + K
Sbjct: 10 VEHLFREARAKDSYLKI-CAPMVRYSKLEFRNLVRSYGTDLTFTSMIMADSFCQSEKARL 68
Query: 291 ALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGM 350
+ + AQ N ++ +D +DLN GCP + G GS +
Sbjct: 69 NEFTTNRDDTPVIAQFAAKNAVDFLSATEMTFPY--VDGVDLNCGCPQRWAMQDGYGSAL 126
Query: 351 MHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTI--VPKMSNWGASLITVHGRS 408
+ + + + L F+V ++ + Q K ++ TI ++ G + ITVHGR+
Sbjct: 127 LRTPELIADMLSTVRRNLPSTFSVSVKVRLLQ-KSLSATIDMCRQLEACGITFITVHGRT 185
Query: 409 REARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIK 468
+ + E ++ +++ PV NGDIFS +D + GVM RG L
Sbjct: 186 PAQKTNIPVNQEALKE-IKSSLGIPVVANGDIFSLQD-ADAMHCKTNCDGVMSARGILSN 243
Query: 469 PWIF 472
P ++
Sbjct: 244 PAMY 247
>UniRef50_A6P2M8 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 311
Score = 69.7 bits (163), Expect = 2e-10
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 330 IDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHT 389
++LN+GCP + KG GSG++ R LE + + ++K R G++ ++ H
Sbjct: 81 VNLNLGCPSGTVTAKGKGSGLLARREELEQLLDGIFAAAPMAISIKTRLGMHDPEEFGH- 139
Query: 390 IVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEM 449
++ + + + +TVH R R Y K EY + + + P+ NGDI + D+ +
Sbjct: 140 LLELYNRYPVAELTVHPRIRGDFYKKPVRPEYFDLAVRMSR-APLCYNGDIITPGDWEKA 198
Query: 450 RKIAPTVKGVMIGRGALIKPWIFNEIKEQK 479
+ P V+ VMIGRG + P + +K ++
Sbjct: 199 SQRWPGVETVMIGRGLVADPSLAGRLKGEQ 228
>UniRef50_A4AAB0 Cluster: TRNA-dihydrouridine synthase C; n=2;
unclassified Gammaproteobacteria|Rep:
TRNA-dihydrouridine synthase C - Congregibacter
litoralis KT71
Length = 328
Score = 69.3 bits (162), Expect = 3e-10
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 6/167 (3%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
QI G +P ++ + A E +DLN GCP + + GGS ++ + V
Sbjct: 74 QILGGDPSVVAENASRAAE-LGAPGVDLNFGCPAKTVNRSDGGSIILREPERVHRIVAAT 132
Query: 365 SKLL--SIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI 422
+ L S+P +VK+R G + IV + S + +H R+R Y + WE+I
Sbjct: 133 RQALPPSVPLSVKIRLGFDSSDRFL-DIVSGIDAARPSELVIHARTRADGYRPPAYWEHI 191
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKP 469
A++ T P+ NG+I+ D R+ + T + +M+GRG L +P
Sbjct: 192 -ALARSKTRLPLIANGEIWGVGDAKLAREKSGT-RDLMLGRGVLCRP 236
>UniRef50_O74731 Cluster: tRNA dihydrouridine synthase Dus2; n=1;
Schizosaccharomyces pombe|Rep: tRNA dihydrouridine
synthase Dus2 - Schizosaccharomyces pombe (Fission
yeast)
Length = 479
Score = 68.9 bits (161), Expect = 4e-10
Identities = 60/248 (24%), Positives = 113/248 (45%), Gaps = 26/248 (10%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWAL-------- 292
++++NK+ L+P+ +G LP R + +GA++ G + ++LL G E +
Sbjct: 4 LNYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCID 63
Query: 293 -VKRHETEDLFGA----------QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLI 341
VK + LF Q+ +P + + A+L+ ++ IDLN GCP
Sbjct: 64 FVKPPSNKVLFRVHPLEANRLIFQLGSASPELAVEAAKLVAN--DVAGIDLNCGCPKHFS 121
Query: 342 YKKGGGSGMMHRLPALETSVRCASKLLSIPF--TVKMRTGVYQDKKITHTIVPKMSNWGA 399
G G+G++ L + + + P+ ++ + + + K+ T +V ++ + G
Sbjct: 122 VHAGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGV 181
Query: 400 SLITVHGRSREARYTKSSDWEYIETCAQAA--TPCPVYGNGDIFSYEDYVEMRKIAPTVK 457
ITVH R+ R T+ +D Y+ + NGD+ SY D +++ + V
Sbjct: 182 RAITVHCRTTPMRNTEPADRSYLSEIVGVCRNKDVSILVNGDVLSYNDGLDVIE-KYGVD 240
Query: 458 GVMIGRGA 465
GV+I R A
Sbjct: 241 GVLIARAA 248
>UniRef50_Q54QJ2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 402
Score = 68.5 bits (160), Expect = 5e-10
Identities = 61/249 (24%), Positives = 112/249 (44%), Gaps = 19/249 (7%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLK------------- 287
+D+ NK ++P+ VG P R + +G D+ E + L+K +
Sbjct: 28 MDYYNKKIMAPMVRVGTYPMRILAYNYGCDIAYSEELIDLKLMKSTRVVNEKLKTIDFIA 87
Query: 288 QEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGG 347
++ L R +D+ G + A + N ++ +D+N+GCP + G G
Sbjct: 88 KDQTLCYRTSEKDVRNVLQLGTASSMTALEAAKVVCN-DICALDINMGCPKFFSVQGGMG 146
Query: 348 SGMMHRLPALETSVRCASKLLS-IPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHG 406
S ++ + ++ + + L+ IP T K+R + D++ T ++ + + G S I VH
Sbjct: 147 SALLSKPETIKDILTTLKRNLNGIPITCKIRL-LSTDQE-TIDLLRIIESTGVSAIGVHC 204
Query: 407 RSREARYTKSSDWEYIETC-AQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGA 465
R R + W+ +E + A+ P+ NGDIF + D +E K V +MI RG
Sbjct: 205 RMIPERPRDPAHWDRLENILSNASFSVPIIANGDIFEHAD-IEKIKKQTKVDSIMIARGV 263
Query: 466 LIKPWIFNE 474
+ IF++
Sbjct: 264 VKNVSIFSK 272
>UniRef50_Q4S086 Cluster: Chromosome undetermined SCAF14784, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14784,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 505
Score = 68.1 bits (159), Expect = 6e-10
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 361 VRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREAR--YTKSSD 418
VR AS+ LS+P T K+R V+++ + T + G L+TVHGR++E + T +
Sbjct: 146 VRLASEKLSVPITCKIR--VFKEMEKTVRYAQMLEKAGCQLLTVHGRTKEQKGAMTGVAS 203
Query: 419 WEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQ 478
WE+I QA PV+ NG+I D + V+GVM G L P +F E +
Sbjct: 204 WEHIRAVRQAVN-IPVFANGNIQHLSDVTRCLQ-ETGVQGVMSAEGNLHNPALF-EGRSP 260
Query: 479 KIWDISSKDRFEILKKYSNYGLEH 502
+W++ +++ E+++K+ L +
Sbjct: 261 PVWEM-AEEYLEVVRKHPPCSLSY 283
Score = 36.3 bits (80), Expect = 2.3
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKG 345
Q C N+P + + A L Q+ D IDLN+GCP +I K+G
Sbjct: 56 QFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRG 93
>UniRef50_Q21L63 Cluster: Dihydrouridine synthase, DuS; n=1;
Saccharophagus degradans 2-40|Rep: Dihydrouridine
synthase, DuS - Saccharophagus degradans (strain 2-40 /
ATCC 43961 / DSM 17024)
Length = 318
Score = 68.1 bits (159), Expect = 6e-10
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 6/175 (3%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G+NP + A E + IDLN GCP + + GG+ ++ + V
Sbjct: 73 QLLGSNPSALAANAARAAELGAVA-IDLNFGCPAKTVNRHKGGACLLDETDTVFDIVNAV 131
Query: 365 SKL--LSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI 422
K S P T K+R G Y ++ + GA+ + VH RS+ Y + W YI
Sbjct: 132 RKATPASTPVTAKIRLG-YLNRDSYLRNAKAIEAAGANELCVHARSKTDGYQPPAYWHYI 190
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
+ PV NG+I+S ED+ + M+GRG L KP + EIK+
Sbjct: 191 GDIRDNLS-IPVVANGEIWSLEDFKRCAE-QSKCSDFMLGRGLLAKPDLALEIKQ 243
>UniRef50_A4BWB1 Cluster: Putative uncharacterized protein; n=5;
Bacteroidetes|Rep: Putative uncharacterized protein -
Polaribacter irgensii 23-P
Length = 317
Score = 68.1 bits (159), Expect = 6e-10
Identities = 44/194 (22%), Positives = 94/194 (48%), Gaps = 4/194 (2%)
Query: 330 IDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHT 389
++ N+GCP ++ K+G GSG++ + + + I ++KMR G Y++ +
Sbjct: 90 LNWNLGCPYPMVTKRGMGSGLISDAEKINSILHKVHNESDILVSMKMRMG-YENPEEILG 148
Query: 390 IVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEM 449
++P + + I +H R + Y +D E + C + +Y NGDI S + ++
Sbjct: 149 VLPILDTYPLKNIAIHARIGKQLYKGGTDLEAFQKCLDNSKH-KMYYNGDITSVVAFHKL 207
Query: 450 RKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQG 509
++ P++ MIGRG + P++ + IK K+RF++ +++ + + + + G
Sbjct: 208 QERFPSIDHWMIGRGLIGDPFLPSMIKADT--TEYPKERFDVFREFHDRIYQEYDAALSG 265
Query: 510 VESTRRFLLEWLSF 523
+ +L + F
Sbjct: 266 PTPIKMKMLGFWEF 279
>UniRef50_Q7VKU5 Cluster: tRNA-dihydrouridine synthase C; n=118;
Gammaproteobacteria|Rep: tRNA-dihydrouridine synthase C
- Haemophilus ducreyi
Length = 325
Score = 68.1 bits (159), Expect = 6e-10
Identities = 67/232 (28%), Positives = 105/232 (45%), Gaps = 21/232 (9%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G P + + AQL E ID N GCP + GG+ ++ + P L + CA
Sbjct: 73 QLLGQYPQWLAENAQLAIELGSYG-IDFNCGCPSKTVNGSHGGAALL-KDPEL---IYCA 127
Query: 365 SKLL------SIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARY-TKSS 417
+K + + P +VKMR G + I + GA ITVHGR+++ Y +
Sbjct: 128 TKAIREAVPKAQPVSVKMRLG-WDCASQCFEIADAIQQAGADEITVHGRTKQDGYRAERI 186
Query: 418 DWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
+W+ I Q PV NG+I + + R+I G+MIGRGAL P + IK
Sbjct: 187 NWQAIGQIQQRLN-IPVIANGEILDFNSAQKCREITACC-GLMIGRGALNTPNLSKVIK- 243
Query: 478 QKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVP 529
+ ++ + ++L +Y N E G R + +WL +L + P
Sbjct: 244 YNVAKMAWSEVLQLLYEYVNMPNER----DSGFYHVAR-IKQWLHYLDKAYP 290
>UniRef50_UPI00015B40A4 Cluster: PREDICTED: similar to
tRNA-dihydrouridine synthase; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to
tRNA-dihydrouridine synthase - Nasonia vitripennis
Length = 505
Score = 67.7 bits (158), Expect = 8e-10
Identities = 67/255 (26%), Positives = 116/255 (45%), Gaps = 23/255 (9%)
Query: 238 RKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWAL----- 292
R + + +KL ++P+ +G LP R + E+GAD+ E + LL+ +++ +
Sbjct: 50 RPRLTYADKLIMAPMVRIGTLPMRLLALEYGADIVYTEELIDWKLLRSVRRVNEVLGTVD 109
Query: 293 -VKRHETEDLFGAQICGNNPYIIT----------KVAQLLQENTELDFIDLNIGCPIDLI 341
+ R + +F + ++ KVA+L+++ ++ ID+N+GCP
Sbjct: 110 YIDRTDGTIVFRTSPIERDRVVLQLGTCDANRALKVAKLVEQ--DVAGIDVNMGCPKRFS 167
Query: 342 YKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASL 401
G G+ ++ + +R LSIP T K+R V + + T +V + + G S
Sbjct: 168 ILGGMGAALLKQPEKASEILRTLVGGLSIPVTCKIR--VLGNVEDTLKLVDTLVDTGISA 225
Query: 402 ITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTV--KGV 459
ITVHGR+ + R + E+I+ A+ A PV NG E ++ K V
Sbjct: 226 ITVHGRTVDERPQHPNRSEFIKRVAEHA-KIPVIANGGSKEIEKRADIFKFKKETGCSSV 284
Query: 460 MIGRGALIKPWIFNE 474
MI R A IF E
Sbjct: 285 MIARAAEWNCSIFRE 299
>UniRef50_A2DYY3 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 313
Score = 67.7 bits (158), Expect = 8e-10
Identities = 70/248 (28%), Positives = 107/248 (43%), Gaps = 26/248 (10%)
Query: 243 WNNKLYLSPLTTVGNLPFRRICKEFGADVTCG----EMALCESLLKGLKQEWALVKR--- 295
+ NKL +P+ +L FR C E+GAD+ ++A+ S ++ +L+K
Sbjct: 9 YKNKLIAAPMVRGSSLSFRLACLEYGADLVFSPGLVDLAIIGSTMEKDDNNISLIKVENG 68
Query: 296 ------HETEDLFGAQICG----NNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKG 345
H T + G I + P I K A + E ID+N GCP +G
Sbjct: 69 HNRRIFHTTAEERGKLIIQLITVDGPNAI-KAADMCTEFAS--GIDINCGCPESFACHRG 125
Query: 346 GGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVH 405
GGS M +L + V+ +P +VKMR ++ + M + GA ITVH
Sbjct: 126 GGSKM--QLESAVDVVKTLKMNSPLPISVKMRVKDTVEESL--QFAKAMVDAGAVAITVH 181
Query: 406 GRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGA 465
GR + S D+E+++ C GNG I + D EMR + +MI A
Sbjct: 182 GRLAADKRHGSVDYEHMKEIFDNIN-CAKIGNGGICNKADAAEMR-VKTGCDSIMIATAA 239
Query: 466 LIKPWIFN 473
L P +F+
Sbjct: 240 LKNPSVFS 247
>UniRef50_Q57V78 Cluster: TRNA-dihydrouridine synthase 1, putative;
n=1; Trypanosoma brucei|Rep: TRNA-dihydrouridine
synthase 1, putative - Trypanosoma brucei
Length = 520
Score = 67.3 bits (157), Expect = 1e-09
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC 363
AQ CGN+P + A+ +++ E +D NIGCP + + GS +M L +
Sbjct: 158 AQFCGNDPETVLAAARHVEDYCEA--VDFNIGCPQGIARRGHYGSFLMEDWELLHNILHA 215
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSRE--ARYTKSSDWEY 421
+ L +P T KMR ++ D+ +T + + G ++ VHGR+RE + + +D
Sbjct: 216 LAVELRVPVTAKMR--IFDDEALTLKYAEMLRDTGIYVLCVHGRTRENKGQQQQPADLRM 273
Query: 422 IETCAQ-AATPCPVYGNGDIFSYEDYVEMRKIAPT-VKGVMIGRGALIKPWIF 472
I + P+ NG++ ++ED R +A T +G M L P +F
Sbjct: 274 IRRVHEHLRGSIPIIANGNVLTFEDV--PRNLAITGCEGYMCAEPLLWDPKLF 324
>UniRef50_O31546 Cluster: Probable tRNA-dihydrouridine synthase 2;
n=10; Bacilli|Rep: Probable tRNA-dihydrouridine synthase
2 - Bacillus subtilis
Length = 325
Score = 67.3 bits (157), Expect = 1e-09
Identities = 73/280 (26%), Positives = 124/280 (44%), Gaps = 15/280 (5%)
Query: 249 LSPLTTVGNLPFRRICKEFGA-DVTCGEMALCESLLK--GLKQEWALVKRHETEDLFGAQ 305
L+P+ V ++ FR + E G DV E ES G + E E A
Sbjct: 16 LAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSESYCHPDGKDSVRGRLTFTEDEQPIVAH 75
Query: 306 ICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCAS 365
I G+ P K++ + E +D+N+GCP+ + G GSG++ R PA+ + A+
Sbjct: 76 IWGDKPENFRKMSIGMAE-LGFKGLDINMGCPVPNVAGNGKGSGLICR-PAVAAELIQAA 133
Query: 366 KLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETC 425
K +P +VK R G Y D + + + +++H R+R + WE I
Sbjct: 134 KAGGLPVSVKTRLG-YTDVDEWREWLTHILKQDIANLSIHLRTRAEMSKVDAHWELIPEI 192
Query: 426 A----QAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIW 481
+ A + NGDI + +++ + V G+MIGRG P+ F KE K
Sbjct: 193 KKLRDEVAPDTLLTINGDIPDRQTGLKLAE-QYGVDGIMIGRGIFTNPFAFE--KEPK-- 247
Query: 482 DISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWL 521
+ SSK+ ++L+ + + E+ + + + RF +L
Sbjct: 248 EHSSKELLDLLRLHLDLHDEYSKEEARPYKPLPRFFKIYL 287
>UniRef50_UPI000023EA9A Cluster: hypothetical protein FG07217.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG07217.1 - Gibberella zeae PH-1
Length = 510
Score = 66.9 bits (156), Expect = 1e-09
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 8/173 (4%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q C N+P + A+ Q D +DLN+GCP + K G+ + + +
Sbjct: 107 QFCANDPDALLSAAK--QVAPYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRLINIL 164
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREAR--YTKSSDWEYI 422
K L +P T K+R + K+ T + GAS++TVHGR RE + T ++W+ I
Sbjct: 165 HKELPVPVTAKIR--ILDTKEETLAYAQNVLKAGASILTVHGRKREQKGHLTGLAEWQMI 222
Query: 423 ETCAQA-ATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
+ ++ NG+I D +E A GVM G L P IF +
Sbjct: 223 RFLRDSLPKETVIFANGNILQEGD-IEKCLEATGADGVMSAEGNLSDPAIFTK 274
>UniRef50_Q6MNE4 Cluster: Dihydrouridine synthase family protein;
n=1; Bdellovibrio bacteriovorus|Rep: Dihydrouridine
synthase family protein - Bdellovibrio bacteriovorus
Length = 323
Score = 66.9 bits (156), Expect = 1e-09
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 5/150 (3%)
Query: 330 IDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLL--SIPFTVKMRTGVYQDKKIT 387
+DLN GCP + + GG+ ++ + V K + +P T K+R G + D
Sbjct: 92 VDLNFGCPAKTVNRHDGGASLLKSCDRVFNIVDTVRKAVPADVPVTAKIRLG-FDDPTKC 150
Query: 388 HTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYV 447
I + A+ +TVH R++ Y + W++I + T + NG+I++ D+
Sbjct: 151 LEIAQAVEEANATWLTVHCRTKTDGYKPPAYWDWIPKIKEK-TKIKLIANGEIWNVADFN 209
Query: 448 EMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
++ + MIGRG + P+IF++IK+
Sbjct: 210 RCVEVTQC-EDYMIGRGVMSNPFIFSQIKQ 238
>UniRef50_Q583Y8 Cluster: TRNA-dihydrouridine synthase 4, putative;
n=3; Trypanosoma|Rep: TRNA-dihydrouridine synthase 4,
putative - Trypanosoma brucei
Length = 419
Score = 66.9 bits (156), Expect = 1e-09
Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 10/227 (4%)
Query: 250 SPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGN 309
+P+ FR++C+ +G D++ M + +S A + E Q+ +
Sbjct: 64 APMVRCSRPAFRKLCRLWGTDISYTHMIMADSFACSEAARQAEFSIYSGETRLITQLASS 123
Query: 310 NPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLL- 368
+ A ++ D IDLN GCP + G G+ ++ + +VRC L
Sbjct: 124 SGPTAATAAAIVAP--WCDAIDLNCGCPQRRVMADGLGAALLRNPEVVADTVRCVRNALE 181
Query: 369 ---SIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETC 425
+P VKMR V D +++ + GA+ ITVHGR+ ++ I T
Sbjct: 182 GGVELPCVVKMR--VKDDVRLSVDFARQCEAAGAAWITVHGRTPNCSAHAPVRFDAINTI 239
Query: 426 AQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
+ A PV NG + ++ + V GVM G G L P F
Sbjct: 240 RE-ALGVPVVANGGVRDPSTALQ-AALTAGVGGVMSGMGLLANPACF 284
>UniRef50_A2F0D1 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 333
Score = 65.7 bits (153), Expect = 3e-09
Identities = 71/269 (26%), Positives = 110/269 (40%), Gaps = 23/269 (8%)
Query: 243 WNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQE----------WAL 292
+ K++ P+ NLPFR +C E GAD G +S+L E W
Sbjct: 9 YRGKIFAGPMVRASNLPFRLMCLENGADGVYGPATSVDSILASHYDENEDPYTMYFGWPK 68
Query: 293 ---VKRHETEDLFGA---QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGG 346
V H G QI N+ + A ++ + D IDLN GCP +G
Sbjct: 69 NPHVHFHTDPKEKGKLIFQILTNDASKAVQAASVVVKFA--DAIDLNCGCPESFATSRGT 126
Query: 347 GSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHG 406
GS +M + V + ++P +VK R ++ I + N GAS I VHG
Sbjct: 127 GSSLMSEPEIVADVVSALRRNYNVPISVKHRIHHNIEESIQFAVA--CENAGASAIAVHG 184
Query: 407 RSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGAL 466
R +E + S ++ ++ + GNG + + E EM + + V+I AL
Sbjct: 185 RLKEQKNKGSVAYDNMKLVFDHLHVAKI-GNGGVKNREMAKEMME-KTGCESVIISSAAL 242
Query: 467 IKPWIFNEIKEQKIWDISSKDRFEILKKY 495
P IF+ E ++ + EI K+Y
Sbjct: 243 KNPTIFSGHPETDPVKLARR-YLEIAKQY 270
>UniRef50_A1AT39 Cluster: Dihydrouridine synthase, DuS; n=7;
Desulfuromonadales|Rep: Dihydrouridine synthase, DuS -
Pelobacter propionicus (strain DSM 2379)
Length = 342
Score = 65.3 bits (152), Expect = 4e-09
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 4/191 (2%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G+ + +Q Q+ I+LN+GCP + G GM+ L + +
Sbjct: 98 QLIGHGREALVSGSQAAQD-AGAAHINLNMGCPYGRMTSGQTGGGMLRSPQELSSIIPAL 156
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
K + F++K+R+G Y + + ++P G + +H R+ +Y +D
Sbjct: 157 RKTIRGTFSIKLRSG-YDNPRQIFDLLPLFEASGVDFLVLHPRTVLQKYAGFADHGITAE 215
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDIS 484
Q +T P+ NGDI S + + G+M+GRGA+ P +F ++ D
Sbjct: 216 AVQRST-LPIIANGDIRSVATGRHVLR-ETGAAGLMLGRGAISDPLLFQRLRNCAPPDPQ 273
Query: 485 SKDRFEILKKY 495
++R +L +Y
Sbjct: 274 PQERAAMLSRY 284
>UniRef50_Q09504 Cluster: Uncharacterized tRNA-dihydrouridine
synthase-like protein C45G9.2; n=2; Caenorhabditis|Rep:
Uncharacterized tRNA-dihydrouridine synthase-like
protein C45G9.2 - Caenorhabditis elegans
Length = 284
Score = 64.9 bits (151), Expect = 6e-09
Identities = 50/216 (23%), Positives = 101/216 (46%), Gaps = 6/216 (2%)
Query: 258 LPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKV 317
L FR++ + + DV M ++ ++ K + + E + Q ++P+++++
Sbjct: 7 LAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDPFVLSEA 66
Query: 318 AQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIP-FTVKM 376
A+++ + + +DLN GCP + KG GS ++ + L VR + P F+V +
Sbjct: 67 AEMVYKCST--GVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDFSVSL 124
Query: 377 RTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYG 436
+ + D + T + K G + +TVHGR+ R + D + + + + P+
Sbjct: 125 KIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQR-AEPIDIQALRIVKDSVS-VPIIA 182
Query: 437 NGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
NG I + E+ + + + V G+M G L P +F
Sbjct: 183 NGGITTREEALFLAE-QTGVDGIMAANGLLDNPALF 217
>UniRef50_A4BCJ5 Cluster: NifR3/Smm1 family protein; n=2;
Gammaproteobacteria|Rep: NifR3/Smm1 family protein -
Reinekea sp. MED297
Length = 314
Score = 64.5 bits (150), Expect = 8e-09
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 6/173 (3%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G++P + + A L +DLN GCP + GG+ ++ ++ VR
Sbjct: 68 QLLGSHPQALAENA-LRAIELGSHGLDLNFGCPSKTVNASKGGAVLLTEPESIYAVVRSV 126
Query: 365 SKLLSIPFTV--KMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI 422
L T+ KMR G ++D + + + GA+ I VH R+++ YT + W ++
Sbjct: 127 RDALPGDQTLSAKMRLG-FEDNSLMWECAHAIRDGGANEIIVHARTKQQGYTPPAYW-HL 184
Query: 423 ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
+A P+ NG+I++ D + A +M+GRGA+ PW+ +EI
Sbjct: 185 PADFEARLGIPMIINGEIWTPADAGRAQHEA-NCSSIMLGRGAVRNPWLASEI 236
>UniRef50_A2FU21 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 322
Score = 64.1 bits (149), Expect = 1e-08
Identities = 53/198 (26%), Positives = 97/198 (48%), Gaps = 12/198 (6%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ GN+ + A+ LQ+ ID+N GC + + G M++ + +
Sbjct: 76 QMSGNDESELIACAKDLQQFAV--GIDINCGCTQHIARRGQYGYFMVNNENKRKNVIEMV 133
Query: 365 SKL---LSIPFTVKMRTGVYQDKK----ITHTIVPKMSNWGASLITVHGRSREARYTKSS 417
+ +++P ++K R +D K IT ++ + G SLI+VHGR++ +
Sbjct: 134 KNIVASINVPLSIKFRLIDGEDGKPDVDITCKFAKELEDAGVSLISVHGRAKNSNKAGPV 193
Query: 418 DWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
D E I A++ + PV NG + + E+ +EM K + GVM+G+G L+ P F++ E
Sbjct: 194 DAEAIRKIAESVS-IPVMANGGVRTKEEAIEMFKESHAA-GVMVGQGLLMNPKAFSDTPE 251
Query: 478 QKIWDISSKDRFEILKKY 495
I S++ ++ K+Y
Sbjct: 252 HDPVAI-SREYLQLWKEY 268
>UniRef50_Q22A31 Cluster: TIM-barrel protein, yjbN family; n=1;
Tetrahymena thermophila SB210|Rep: TIM-barrel protein,
yjbN family - Tetrahymena thermophila SB210
Length = 480
Score = 63.3 bits (147), Expect = 2e-08
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 13/207 (6%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ GN+P + K A++ +E D ++LN+GCP D + G+ +M + +R
Sbjct: 163 QLGGNDPDNLAKAAKICEE-IGYDEVNLNVGCPSDRVQSGKFGACLMKEPELVAEIMRKM 221
Query: 365 SKLLSIPFTVKMRTGV--YQDKKITHTIVPKMSNWG-ASLITVHGRS--------REARY 413
+ SIP TVK R GV + + + +S G VH R + R
Sbjct: 222 KEACSIPVTVKCRLGVDNFDSYEFARDFIKTVSEKGQVQHFVVHARKAFLKGLNPAQNRN 281
Query: 414 TKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFN 473
++Y+ Q NG +Y+ ++ K + G M+GR A PW+F+
Sbjct: 282 VPPLKYDYVLRLKQEFPHLHFSINGGFKTYDQISDILKQENGLHGCMLGRAAYETPWLFS 341
Query: 474 EIKEQKIWDIS-SKDRFEILKKYSNYG 499
++ + + R EIL+ + YG
Sbjct: 342 DMDRRYFGKQNPGFSRREILQIWGQYG 368
>UniRef50_Q550J6 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 392
Score = 62.9 bits (146), Expect = 2e-08
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIY--KKGGGSGMMHRLPALETSV 361
AQ GN P + A++ E D +D+N+GCP + K+ G+ ++ + V
Sbjct: 72 AQFFGNKPEYFYESAKIANE-LGYDGVDINMGCPSRKVLSPKQASGAALITNPSLAKEIV 130
Query: 362 RCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEY 421
+ + L+ V ++T + DK +P + + +T+H R+++ + WE+
Sbjct: 131 KITKEALNFEKPVSVKTRIGFDKIEIDEWIPLILESEPACLTLHLRTKKELSLVPAHWEH 190
Query: 422 ------IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
+E Q + + GNGD+ +YE ++ + GVMIGR PW+FN+
Sbjct: 191 QVLDRVVELRNQISPNTLLVGNGDVETYEQGIDYINQFG-IDGVMIGRAVYGNPWLFNK 248
>UniRef50_Q5KGP0 Cluster: Putative uncharacterized protein; n=3;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 496
Score = 62.5 bits (145), Expect = 3e-08
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 24/252 (9%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLL---------KGL----K 287
I++ NKL L+P+ G+LP R + +GA + + +++ G+ K
Sbjct: 104 INYKNKLVLAPMVRTGSLPMRLLSLYYGAGLVWSPEVVDRAIIGAERSVDPVTGVITYHK 163
Query: 288 QEWALVKRHETEDLFGA-QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGG 346
+ + H E F QI +NP + K AQ +Q+ ++ IDLN GCP G
Sbjct: 164 GQGPIFSTHPAEKPFLIFQIGSSNPELAVKAAQTVQQ--DVAGIDLNCGCPKPFSTHAGM 221
Query: 347 GSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHG 406
G+ ++ L +R + +P + K+R + + T + ++ G +TVH
Sbjct: 222 GAALLSTPELLLDILRALLDSIPLPISCKIR--LLPTQPSTLYLASRILRTGVRNLTVHC 279
Query: 407 RSREARYTKSSDWEYIETCAQAA--TPCPVYGNGDIFSYEDYVEMRK----IAPTVKGVM 460
R+R+ R + + WE + + + V NGD + ++ +R A VM
Sbjct: 280 RTRQMRPGERALWERLSSIVELGKRRGISVICNGDGEGWSNWDRIRNETGMCASCADSVM 339
Query: 461 IGRGALIKPWIF 472
+ R A P +F
Sbjct: 340 LARSAERNPSVF 351
>UniRef50_A7EMF2 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 342
Score = 62.1 bits (144), Expect = 4e-08
Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 9/228 (3%)
Query: 250 SPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGN 309
+P+ L FR ++G D+ M L + + + + T AQ
Sbjct: 35 APMVRYSKLAFRETVAQYGVDLCWTPMILAKEFNRSVFARDSDFTTSPTSTPTIAQFGVC 94
Query: 310 NPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLS 369
+P I++ L+ ++ ID+N GCP G+ +MH+ + V+ A L
Sbjct: 95 SPLEISRSTTLIAPY--INGIDINCGCPQSWACACSIGAALMHKRELVAEMVKEAKSALK 152
Query: 370 IPF-----TVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIET 424
TV ++ +++D + T + + + G IT+HGR R + + E I+
Sbjct: 153 REGYEGKKTVSVKIRIHRDLRDTVDFIKTVQDAGVDFITIHGRMRSTPSSHPVNLEAIK- 211
Query: 425 CAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
T P NGDI S E + +V GVM RG L P +F
Sbjct: 212 LLNTHTTVPTVSNGDITSLRSAHEHTQ-QTSVSGVMSARGLLSNPALF 258
>UniRef50_A2ACC0 Cluster: Novel protein; n=17; Eumetazoa|Rep: Novel
protein - Mus musculus (Mouse)
Length = 194
Score = 61.3 bits (142), Expect = 7e-08
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 9/136 (6%)
Query: 296 HETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGG-GSGMMHRL 354
+ E+L+ +C + +I + A L Q+ D IDLN+GCP +I K+G G+ +
Sbjct: 60 YRKENLY-CDVCPEDRPLIVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEW 115
Query: 355 PALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREAR-- 412
L+ + A + LS+P T K+R DK + + + G L+TVHGR++E +
Sbjct: 116 DLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRY--AQMLEKAGCQLLTVHGRTKEQKGP 173
Query: 413 YTKSSDWEYIETCAQA 428
++ WE+I+ +A
Sbjct: 174 MAGTASWEHIKAVRKA 189
>UniRef50_Q4UGK9 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 359
Score = 61.3 bits (142), Expect = 7e-08
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 22/232 (9%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETED--LFG 303
K ++P+ LPFR +C+ + AD+ M + + + + + H + D
Sbjct: 27 KFIVAPMVDQSELPFRLLCRRYSADLAYTPM--LHAKIFSENENYRNIHFHTSSDDKPLI 84
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC 363
AQ CGN+P + ++ ++ ID+N+GCP I KKG + P L T
Sbjct: 85 AQFCGNDPSAFILASSYIK--NDVSAIDINLGCP-QGIAKKGRYGSFLLEYPQLITK--- 138
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSS--DWEY 421
+ F + R ++ V G +TVHGR R T+ S DW+
Sbjct: 139 GFASVDTKFMLFTRGWLFS--------VQSCQANGCKALTVHGRHRSETKTRISECDWDS 190
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFN 473
I+ ++ PV NG I ++ED V+ VM L P++F+
Sbjct: 191 IK-IIKSRVNIPVIANGGIETFED-VKRCLDYTGADAVMSSEAILENPYLFS 240
>UniRef50_Q4PAE4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 766
Score = 61.3 bits (142), Expect = 7e-08
Identities = 60/262 (22%), Positives = 116/262 (44%), Gaps = 24/262 (9%)
Query: 234 LPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCG----EMAL--CE------- 280
+P T+++ N ++L+P+ +G LP R + E+GAD+ G + A+ CE
Sbjct: 65 IPVCTSTLEYRNGIFLAPMVRIGTLPTRLLSLEYGADLVWGPEIVDRAIIGCERKVNPHT 124
Query: 281 SLLKGLKQEWALVKRHETEDLFGA-QICGNNPYIITKVAQLLQENTELDFIDLNIGCPID 339
+++ LK + H E + Q+ +P++ + + + + ++ +DLN GCP
Sbjct: 125 GVVEYLKDHKQIFSCHPIERPYLVYQLGSADPHLAFQAIKTITQADDVAAVDLNCGCPKP 184
Query: 340 LIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGA 399
G G+ M+ L +++ + V + + ++ T +V K+ GA
Sbjct: 185 FSTHAGMGANMLSTPILLCNTLKAMRRAAPAHVAVTCKIRLLPTQEKTLELVDKIVRTGA 244
Query: 400 -SLITVHGRSREARYTKSSDW----EYIETCAQAAT----PCPVYGNGDIFSYEDYVEMR 450
+TVH R+++ R + + E ++ AT PV NGD++ ++
Sbjct: 245 IECLTVHCRTKDMRPREPALLHRLREIVDHVNSVATEMGRTIPVVCNGDVWDAATVPRIK 304
Query: 451 KIAPTVKGVMIGRGALIKPWIF 472
++ V MI RGA P F
Sbjct: 305 ELT-GVTSTMIARGAEANPSCF 325
>UniRef50_Q5SMC7 Cluster: TRNA-dihydrouridine synthase; n=2; Thermus
thermophilus|Rep: TRNA-dihydrouridine synthase - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 342
Score = 60.1 bits (139), Expect = 2e-07
Identities = 64/265 (24%), Positives = 124/265 (46%), Gaps = 20/265 (7%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTC-GEMALCESLLKGLKQEWALVKRHETEDLFGA 304
+L ++P+ + FR + ++ V EM + +++L+G +E L R E E
Sbjct: 5 RLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRG-NRERLLAFRPE-EHPIAL 62
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G++P + + A++ E D I+LN+GCP + + G G+ ++ L + ++
Sbjct: 63 QLAGSDPKSLAEAARI-GEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAM 121
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTI---VPKMSNWGASLITVHGRSR-EARYTKSS--- 417
+ + +P TVKMR G+ + K+ + V M+ G + VH RS A TK++
Sbjct: 122 GEAVRVPVTVKMRLGL-EGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREI 180
Query: 418 ---DWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
+++ NG I S E+ + K V GVM+GR P++ E
Sbjct: 181 PPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK---RVDGVMLGRAVYEDPFVLEE 237
Query: 475 IKEQKIWDISSK-DRFEILKKYSNY 498
+++++ + + R E+ ++ Y
Sbjct: 238 -ADRRVFGLPRRPSRLEVARRMRAY 261
>UniRef50_Q83D40 Cluster: TIM-barrel protein, yjbN family; n=7;
Bacteria|Rep: TIM-barrel protein, yjbN family - Coxiella
burnetii
Length = 353
Score = 59.7 bits (138), Expect = 2e-07
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 17/237 (7%)
Query: 244 NNKLYLSPLTTVGNLPFRRICKEFGADVTC-GEMALCESLLKGLKQEWALVKRHETEDLF 302
N ++ ++P+ + FR ++ V EM +LLKG ++W + E
Sbjct: 28 NRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKG--KQWRCLDYSPEEHPL 85
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
Q+ G++P + A+L +E D I+LN+GCP + G+ ++ + V
Sbjct: 86 ALQVGGSDPQSLALCARLAEEKG-FDEINLNVGCPSGRVIAGRFGACLLKEAELVADCVA 144
Query: 363 CASKLLSIPFTVKMRTGVYQDKKITHT--IVPKMSNWGASLITVHGRS--------REAR 412
S ++IP +VK RTGV H V ++ G + +H R E R
Sbjct: 145 AMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENR 204
Query: 413 YTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKP 469
+ + Q + NG I + E + + V GVMIGR A P
Sbjct: 205 TVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLR---EVDGVMIGREAYANP 258
>UniRef50_Q4FQ57 Cluster: Possible tRNA-dihydrouridine synthase;
n=5; Moraxellaceae|Rep: Possible tRNA-dihydrouridine
synthase - Psychrobacter arcticum
Length = 350
Score = 59.3 bits (137), Expect = 3e-07
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 318 AQLLQENT----ELDF--IDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLL--S 369
AQL+ EN EL ID+N GCP + GGS ++ + + + + +
Sbjct: 109 AQLMAENAAHACELGAPAIDINFGCPAKTVNSHRGGSVLLDEPEVMYDIISAVRQAVPAN 168
Query: 370 IPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAA 429
IP + K+R G Y D I ++ GA +T+H R++ Y + W+ I+ A +
Sbjct: 169 IPVSAKIRLG-YTDTSRMDDIRGAIAASGADWLTIHARTKTQGYKPPAYWDKIQ--AFNS 225
Query: 430 TPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
PV NG+I++ E + T +M+GRGA+ +P + ++
Sbjct: 226 LKIPVIANGEIWNSEHAQNCMAQSGTTH-LMLGRGAVTRPDLIAQV 270
>UniRef50_A4RU69 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 345
Score = 58.4 bits (135), Expect = 5e-07
Identities = 54/238 (22%), Positives = 96/238 (40%), Gaps = 19/238 (7%)
Query: 243 WNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMAL------CESLLKG-------LKQE 289
+ K +P+ + L R + E+GAD+ GE + C +L + +
Sbjct: 11 YTGKNVCAPMVRISTLATRLLAHEYGADLVYGEELVDKRFMHCRRILNKELGSVDFIDAK 70
Query: 290 WALVKRH--ETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGG 347
L R E + Q+ ++ K A+L+ + ID+N+GCP G G
Sbjct: 71 GTLTFRTVPEERERVVFQVGTSSAASALKSAELVARDVAA--IDVNMGCPKHFSTSGGMG 128
Query: 348 SGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGR 407
+ ++ + + + + L V + + + ++ T + + + G S VHGR
Sbjct: 129 ARLLSQPELVRDILTTLRRNLPSTTHVTCKIRLLESERETAELAKMIESCGVSAFAVHGR 188
Query: 408 SREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGA 465
R + + W I+ + A CPV NGD+ YED+ +R M RGA
Sbjct: 189 YIPQRPREPAHWNLIKNVVE-AVDCPVIANGDVECYEDFARIR-AQTGAASAMCARGA 244
>UniRef50_Q3IKP0 Cluster: TRNA-dihydrouridine synthase C; n=5;
Alteromonadales|Rep: TRNA-dihydrouridine synthase C -
Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 326
Score = 57.6 bits (133), Expect = 9e-07
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 8/203 (3%)
Query: 330 IDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTV--KMRTGVYQDKKIT 387
IDLN GCP + K GG+ ++ + ++ + V K+R G + D +
Sbjct: 92 IDLNFGCPAKTVNKSKGGAVLLKDPEHMYEIIKAVRDAVDSKHQVSAKIRLG-FDDDSNS 150
Query: 388 HTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYV 447
IV + + GAS I +H R++ Y + WE I + V NG+I+ D +
Sbjct: 151 QEIVDAVVSAGASSIAIHARTKRDGYNPPAYWEKIPPLIK-DKDIAVVANGEIWQVADAM 209
Query: 448 EMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFE-ILKKYSNYGLEHWGSD 506
+K + +M+GRGAL P + +IK + +E IL N + H +
Sbjct: 210 LCQKRSGCT-DLMLGRGALSHPDLAKKIKANINNEHYVGLEWEHILYHLINSAIHHDPAK 268
Query: 507 TQGVESTRRFLLEWLSFLYRYVP 529
+ ++R +WL +L R P
Sbjct: 269 DEKYFASR--TKQWLGYLKRQYP 289
>UniRef50_A5Z3X7 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 326
Score = 57.2 bits (132), Expect = 1e-06
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 17/189 (8%)
Query: 305 QICGNNP-YIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSV-- 361
QI N Y I QL++ + + I+LN GCP + K G+G + A++
Sbjct: 65 QILANRADYFIKAANQLIELGYDKE-INLNAGCPSGTVVSKNKGAGFLKDTEAMDRFFDE 123
Query: 362 ------RCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTK 415
+ S+ ++ +VK R G+Y+ + I+ + + S + VH R+RE Y
Sbjct: 124 TFNWLEKKNSEGHNLSISVKTRIGMYEPDEF-ENILEVYNKYPISQLIVHPRTREQLYKG 182
Query: 416 SSDWEYIETCAQAATPCPVYGNGDIFSYEDYVE-MRKI----APTVKGVMIGRGALIKPW 470
+ + E + + + PV NGDI + E+Y + KI + +MIGRG + P
Sbjct: 183 TPNMEAFKYALENSKN-PVCYNGDINTVENYHRIIEKINDDSEMKIGSIMIGRGLIGNPN 241
Query: 471 IFNEIKEQK 479
+ NEIK K
Sbjct: 242 LVNEIKGGK 250
>UniRef50_Q4PBU9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 477
Score = 56.4 bits (130), Expect = 2e-06
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 28/195 (14%)
Query: 304 AQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRC 363
AQ + P ++L+ +D +DLN GCP Y++ GS ++ + + VR
Sbjct: 171 AQFASSKPEPFADASELI--GRFVDGVDLNCGCPQPWAYEELLGSYLLRQPETVRDMVRA 228
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIE 423
+ F V ++ + D ++T +V + GAS++ +HGR+R ++ + + I+
Sbjct: 229 VKARMGSDFCVSVKIRIDPDLRLTDALVRNALHAGASILQIHGRTRWQSSSEPVNLDGIK 288
Query: 424 TCAQAATPC-------------------------PVYGNGDIFSYEDYVEMRKIAPTVKG 458
AA C P NGD+++ +D + R+ +G
Sbjct: 289 FAVDAANACGFRTSWGSKGGAAARFADGGSGGLVPCVANGDVWTLDDAIHYRQ-TTGCRG 347
Query: 459 VMIGRGALIKPWIFN 473
M RG L P +F+
Sbjct: 348 AMSARGLLANPALFS 362
>UniRef50_Q97DM0 Cluster: Predicted TIM-barrel enzyme, nifR3 family;
n=17; Clostridiales|Rep: Predicted TIM-barrel enzyme,
nifR3 family - Clostridium acetobutylicum
Length = 311
Score = 56.0 bits (129), Expect = 3e-06
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 8/166 (4%)
Query: 330 IDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHT 389
++LN+GCP + KG G+G + + L+ + ++K R G + +
Sbjct: 88 VNLNLGCPSGTVVSKGRGAGFLKKRQELDEFLEKIFSKSPAKISIKTRIGKDSPDEF-YE 146
Query: 390 IVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEM 449
++ + + + +H R + Y + + + + + Y NGDIF DY+++
Sbjct: 147 LIKIFNKYPLEELIIHPRIQTDFYNNKPNMKVFKDALELSKSTVCY-NGDIFQSNDYIKL 205
Query: 450 RKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKY 495
+ + VM+GRG + P I +I + + E+LKK+
Sbjct: 206 IEEFSNLGVVMLGRGIISNPNIIKKINSNNVLE------KEVLKKF 245
>UniRef50_Q7R1J1 Cluster: GLP_38_15456_16676; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_38_15456_16676 - Giardia lamblia
ATCC 50803
Length = 406
Score = 56.0 bits (129), Expect = 3e-06
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 305 QICGNNPYIITKVAQLLQEN---TELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSV 361
Q+CGNNP A+LL ++ ++L +D+N+GCP KG G + P + +
Sbjct: 118 QLCGNNPSTFRAAAELLHDSPIASQLVALDINLGCPASCASSKGYGFYVAQNWPLVHQII 177
Query: 362 RCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGR--SREARYTKS 416
S P T K+R +K I + ++ MS GAS IT+H R +R+ ++ ++
Sbjct: 178 SETSSARLFPVTCKIRPLNSIEKTIDYMVLLVMS--GASGITIHMRHTTRQGKHAQA 232
>UniRef50_A1IED4 Cluster: Putative uncharacterized protein; n=1;
Candidatus Desulfococcus oleovorans Hxd3|Rep: Putative
uncharacterized protein - Candidatus Desulfococcus
oleovorans Hxd3
Length = 324
Score = 55.6 bits (128), Expect = 4e-06
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Query: 333 NIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVP 392
N+GCP ++ KK G+G++ + + + +VK+R G + D ++P
Sbjct: 93 NLGCPYPMVAKKYRGAGLLPHTDRIAEFLDTVMSRMKGGLSVKIRLG-WADTTELMGLLP 151
Query: 393 KMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKI 452
+ + + + VH R+ RY + D E + T PV NGDI + D+ +
Sbjct: 152 VLHRYPLAELIVHPRTGIQRYEGTVDLAAFERVLEN-TGLPVMYNGDIQTVADFAYLSGR 210
Query: 453 APTVKGVMIGRGALIKPWI 471
V MIGRGAL P++
Sbjct: 211 FKAVDRWMIGRGALADPFL 229
>UniRef50_A0EAZ6 Cluster: Chromosome undetermined scaffold_87, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_87,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 346
Score = 55.6 bits (128), Expect = 4e-06
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 16/206 (7%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ GN+P + K AQ+ E D I+LN+GCP + + G+ +M + ++
Sbjct: 70 QLGGNDPEKLAKAAQIA-EQAGFDEINLNVGCPSERVQDGAFGACLMKEPHLVAQCMKKM 128
Query: 365 SKLLSIPFTVKMRTGV--YQDKKITHTIVPKMSNWG-ASLITVHGRS--------REARY 413
+ + IP T+K R GV + V + G + +H R E R
Sbjct: 129 KEAVKIPCTLKCRLGVDNLDSYEFVRNFVEIVYKEGEVNHFIMHARKAFLKGLNPHENRT 188
Query: 414 TKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFN 473
++++ + NG I E + ++ P V G+MIGR A PW+F+
Sbjct: 189 VPPLKYDWVYQLKKEFPEIKFTLNGGIKCTE---HIDQVLPNVDGIMIGRSAHENPWMFS 245
Query: 474 EIKEQKI-WDISSKDRFEILKKYSNY 498
+ + + +R EIL++Y+ +
Sbjct: 246 DFDRLYYGGENQNYNRKEILEQYAEF 271
>UniRef50_UPI0000DAE45A Cluster: hypothetical protein
Rgryl_01000346; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000346 - Rickettsiella
grylli
Length = 330
Score = 55.2 bits (127), Expect = 5e-06
Identities = 58/247 (23%), Positives = 109/247 (44%), Gaps = 22/247 (8%)
Query: 260 FRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQ 319
FR ICK+ A + EM +++LK +E L+ E Q+ G ++K A+
Sbjct: 29 FRLICKK--AQLYT-EMFTAQAILKSPARE-RLLTVDANEKALAIQLGGGIASDLSKAAK 84
Query: 320 LLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTG 379
++ E+ I+LN+GCP + + G G ++ + ++ ++ +P TVK R G
Sbjct: 85 IV-ESYGYSEINLNVGCPSEKVQSGGFGVVLLKEPNRVADAIAAMKAVVRLPVTVKTRIG 143
Query: 380 VYQDKKITH--TIVPKMSNWGASLITVHGRS--------REARYTKSSDWEYIETCAQAA 429
V D+ + + + ++S G +H R +E R ++ ++ +
Sbjct: 144 VDNDESYDYLASFIRQVSLAGCDTFIIHARKAWLHGVSPKENREIPPLNYPWVYQIKRDF 203
Query: 430 TPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRF 489
+ NG I + + + V VMIGR A P++F ++ IS +DRF
Sbjct: 204 PHLTIVLNGGITCLKRAYQQLQ---HVDAVMIGRAAWYNPYLFAQLDAL----ISPQDRF 256
Query: 490 EILKKYS 496
+ ++S
Sbjct: 257 IVPHRFS 263
>UniRef50_Q4FLD8 Cluster: Putative uncharacterized protein; n=2;
Candidatus Pelagibacter ubique|Rep: Putative
uncharacterized protein - Pelagibacter ubique
Length = 330
Score = 55.2 bits (127), Expect = 5e-06
Identities = 55/237 (23%), Positives = 111/237 (46%), Gaps = 22/237 (9%)
Query: 275 EMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNI 334
EM + E++ +G K++ L++ + E QI G++P ++ + ++ E+ D I+LN+
Sbjct: 34 EMVVSEAIHRGDKKK--LLEFNINEKPIALQIGGSSPTLLAEATKV-GEDFGYDEINLNL 90
Query: 335 GCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSI---PFTVKMRTGV--YQDKKITHT 389
GCP + K G+ +M + P L C SK+ S+ P T+K R G +D + H
Sbjct: 91 GCPSKKVEKNKFGACLM-KEPNLVAD--CLSKMQSVTKLPVTIKTRIGYDDTEDYENLHR 147
Query: 390 IVPKMSNWGASLITVHGRSR-EARYTKSSD-------WEYIETCAQAATPCPVYGNGDIF 441
+ + + G +H R ++T + ++++ + + NG I
Sbjct: 148 FISTLKSTGVKTFIIHARKAILGKFTPKQNLNIPPLKYDFVYRLKKDFPNEEIIINGGIT 207
Query: 442 SYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNY 498
+ + +M+ V GVMIGR A P++ +I+ + + R +++++ Y
Sbjct: 208 TTD---QMKDHLDKVDGVMIGRAAYHTPYLLADIERDIFNNENVPSRQDVIEQLLPY 261
>UniRef50_A2DHB4 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 312
Score = 55.2 bits (127), Expect = 5e-06
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 16/214 (7%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALV--KRHETEDLFGA 304
++L+P+ V + FR++C++ G + + KQ V + E
Sbjct: 15 IFLAPMADVNDYSFRKLCRQNGVSLCWTGFINAHHWVTRTKQRDRDVWFTTRDNEKNLVV 74
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMM----HRLPALETS 360
Q+ G+N + A+ + EN D I+LN GC + G G ++ HR AL
Sbjct: 75 QLLGSNLEELVSCAKDV-ENF-CDMIELNCGCTHCFASRSGCGFFLIDTQKHRDSAL-IL 131
Query: 361 VRCASKLLSIPFTVKMRTGVYQDKKI-----THTIVPKMSNWGASLITVHGRSREARYTK 415
++ K ++ P ++K+R + D + T + G SLITVH R+++A
Sbjct: 132 IQNLIKSINKPVSIKIRL-ISDDNSVPSLERTVKFAQDLERVGVSLITVHARTQQADKKG 190
Query: 416 SSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEM 449
D++ I+ QA + PV NG I S E E+
Sbjct: 191 DVDYDAIKAVVQAVS-VPVIANGGISSLEQAQEI 223
>UniRef50_Q7R9R0 Cluster: Uncharacterized protein family UPF0034,
putative; n=7; Plasmodium|Rep: Uncharacterized protein
family UPF0034, putative - Plasmodium yoelii yoelii
Length = 531
Score = 54.4 bits (125), Expect = 8e-06
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 5/165 (3%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCG-EMALCESLLKGLKQEWALVKRHETEDLFGAQ 305
+ ++P+ V N FR + + V EM + +LL + + ++ E Q
Sbjct: 154 IQVAPMINVTNRHFRALVRIISKKVQLWTEMIVDNTLLYNINNLEEHLGFNKNEHPIVCQ 213
Query: 306 ICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGG-GSGMMHRLPALETSVRCA 364
+ G++P +++ A +L E D I++N+GCP + KG G+ +M ++ V
Sbjct: 214 LGGSDPTSLSEAA-ILVEQAGYDEININVGCPSTKVANKGAFGAYLMKNPQLVKNIVYEI 272
Query: 365 SKLLSIPFTVKMRTGV--YQDKKITHTIVPKMSNWGASLITVHGR 407
K + IP TVK+RTGV + + +S+ G +H R
Sbjct: 273 KKKVQIPVTVKIRTGVDNLDSFSFLRSFIETVSSAGCDHFIIHSR 317
>UniRef50_A5WG83 Cluster: TIM-barrel protein, yjbN family; n=4;
Moraxellaceae|Rep: TIM-barrel protein, yjbN family -
Psychrobacter sp. PRwf-1
Length = 348
Score = 54.0 bits (124), Expect = 1e-05
Identities = 69/286 (24%), Positives = 113/286 (39%), Gaps = 20/286 (6%)
Query: 244 NNKLYLSPLTTVGNLPFRRICKEFGADVTC-GEMALCESLLKGLKQEWALVKRHETEDLF 302
N +L ++P+ +R + F EM ++L+G L++ E
Sbjct: 20 NKRLSVAPMIDWTTTDYRFFARLFNPHTYLYTEMISTSAILQGKTDR--LLRYDTLEHPL 77
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
Q+ G + +T+ A Q+ + +++N+GCP D + G+ +M + VR
Sbjct: 78 VLQLGGADISEMTQCAVEAQKRG-FNEVNINVGCPSDRVQHNKIGACLMAEPDTVAALVR 136
Query: 363 CASKLLSIPFTVKMRTGV--YQDKKITHTIVPKMSNWGASLITVHGR--------SREAR 412
+ IP TVK R G+ + + V + G VH R +E R
Sbjct: 137 NMQAHVDIPVTVKHRIGIDEHDSYEFMQDFVSASAEAGCQRFIVHARIAWLNGLSPKENR 196
Query: 413 YTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
+E + QA + NG I S E +++ V GVMIGR A P+I
Sbjct: 197 EIPPLRYEDVYRLKQAFPELHIEINGGIDSIE---QIKAHLQQVDGVMIGRAAYHNPYIL 253
Query: 473 NEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLL 518
E W ++ R +IL K Y LE + + + S R L
Sbjct: 254 AE--AMSFWGEAAPSRAQILTKLYPY-LEQQVAKGEPLPSLARHFL 296
>UniRef50_Q04VP3 Cluster: TRNA-dihydrouridine synthase; n=4;
Leptospira|Rep: TRNA-dihydrouridine synthase -
Leptospira borgpetersenii serovar Hardjo-bovis (strain
JB197)
Length = 339
Score = 53.2 bits (122), Expect = 2e-05
Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 15/205 (7%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G+NP + + +++ E+ I+LN+GCP D + + G+ +M + V
Sbjct: 71 QLGGDNPKALAESSKI-GEDYGYSEINLNVGCPSDRVREGNFGACLMETPERVAELVCAM 129
Query: 365 SKLLSIPFTVKMRTGVYQDKKITH--TIVPKMSNWGASLITVHGR--------SREARYT 414
+SIP TVK R G+ + + + + G VH R + R
Sbjct: 130 DGNVSIPVTVKCRIGISGKETLEDLCRFIECVRQAGVRRFIVHARIAILGGLSPAQNRQI 189
Query: 415 KSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
+ ++E+ + + NG I EM+ T GVMIGR A P++F+E
Sbjct: 190 PPLRYAHVESLKKEFPDLLIEINGGI---RTLAEMQDRLKTNDGVMIGRAAYETPYLFSE 246
Query: 475 IKEQKIWDIS-SKDRFEILKKYSNY 498
+ D S S R E+L + +Y
Sbjct: 247 VDSLFFHDNSPSLSRREVLLRMRDY 271
>UniRef50_Q4Q391 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 493
Score = 53.2 bits (122), Expect = 2e-05
Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 31/251 (12%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQI 306
L +P+ FR++C+ +G V+ M + ES +K A R+E E+ AQ+
Sbjct: 98 LIQAPMVRCSRPAFRQVCRAWGTRVSYTHMLMAESFVKSPHARHAEFARYEGENRLVAQL 157
Query: 307 CGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMM---HRLPALETSVR- 362
+ + A LL+ D IDLN GCP K+G G+ ++ R+ + S+R
Sbjct: 158 AAKSGPAAAQAALLLR--PYCDGIDLNCGCPQRWAMKEGIGAALLDQPERVADMVRSIRN 215
Query: 363 --------------------CASKLLS-IPFTVKMRTGVYQDKKITHTIVPKMSNWGASL 401
C S + +P VKMR + D + + + G S
Sbjct: 216 AMPDGSTAPMIVGNGGEYSSCTSAVPPFLPCVVKMR--IKDDLRRSVDFARQCEAAGVSW 273
Query: 402 ITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMI 461
+TVHGR+ + + +E ++ + + PV NG + +E + G+M
Sbjct: 274 LTVHGRTPTCHSSTAVQFEAVKLIRENLS-VPVVLNGGVTDVSTAME-AALRTGCGGLMS 331
Query: 462 GRGALIKPWIF 472
G L P +F
Sbjct: 332 ANGLLDNPAMF 342
>UniRef50_Q9PGB5 Cluster: tRNA-dihydrouridine synthase A; n=8;
Proteobacteria|Rep: tRNA-dihydrouridine synthase A -
Xylella fastidiosa
Length = 340
Score = 53.2 bits (122), Expect = 2e-05
Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 17/211 (8%)
Query: 275 EMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNI 334
EM ++++ G ++ L+ E Q+ G+ P ++ K A++ + + I+LN
Sbjct: 47 EMVHAKAVIYGDRER--LLGFASVEQPVALQLGGSEPALLAKAARIAVDWGYSE-INLNC 103
Query: 335 GCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITH--TIVP 392
GCP D + G+ +M + V + ++S+P TVK R GV +D V
Sbjct: 104 GCPSDRVQAGSFGARLMREPALVADCVAAMAAVVSVPVTVKCRLGVNEDDDYGRFAKFVD 163
Query: 393 KMSNWGAS-LITVHGRS--------REARYTKSSDWEYIETCAQAATPCPVYGNGDIFSY 443
+S +S +I VH R+ +E R ++++ + V NG I S
Sbjct: 164 WVSRASSSRMIVVHARNAWLQGLSPKENREIPPLRYDWVYRLKRERPELAVVLNGGITSV 223
Query: 444 EDYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
E ++ + V GVM+GR A P+I ++
Sbjct: 224 EAGLDHLLM---VDGVMLGRAAYQDPYILHQ 251
>UniRef50_A2EN54 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 321
Score = 52.8 bits (121), Expect = 2e-05
Identities = 62/256 (24%), Positives = 108/256 (42%), Gaps = 16/256 (6%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICG 308
L+P+ +G++ FR +C G DV M + ++ E + QI G
Sbjct: 17 LAPMVEMGDIAFRILCHRHGCDVCWTGMINGSQWNRSKTYRQQQIEYSEEDRPLVIQISG 76
Query: 309 NNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGG-GSGMMHRLPALETSVRCASKL 367
+ + A+ + E ID+N+GC + K+G G M+ + V +
Sbjct: 77 SIDVDLLTTAKSMSEFGVP--IDINLGC-CQKVAKRGEYGYFMVDSEQKRQNVVNLIKSI 133
Query: 368 ---LSIPFTVKMR-----TGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDW 419
+++P VK+R +G+ IT + GASLIT+HGRS +
Sbjct: 134 PSEITVPLYVKIRALTDESGI-PSIPITVDFAKHLEEAGASLITIHGRSAAQDKHGPLNK 192
Query: 420 EYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQK 479
E ++ QA + PV NG I S +D M + + M + L+ P +F++ Q
Sbjct: 193 ELVKAVVQAVS-IPVIVNGGINSLDDARNMIRETGAI-AAMSAQSLLMDPTLFDKNGRQP 250
Query: 480 IWDISSKDRFEILKKY 495
+ + + +I +KY
Sbjct: 251 N-TVFALEYLDIFEKY 265
>UniRef50_Q5ZVH8 Cluster: Zinc binding TIM barrel protein, YjbN
family; n=4; Legionella pneumophila|Rep: Zinc binding
TIM barrel protein, YjbN family - Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 /ATCC 33152 /
DSM 7513)
Length = 334
Score = 52.0 bits (119), Expect = 4e-05
Identities = 57/264 (21%), Positives = 108/264 (40%), Gaps = 16/264 (6%)
Query: 245 NKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGA 304
+KL ++P+ N PFR + + + ++ + AL + E
Sbjct: 11 SKLSIAPMIDWTNSPFRTLMRLLAPNALLYTEMQTTGAVQN-NPDRALYF-NSVEHPLAI 68
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G + + K A ++ E + I+LN+GCP D + G+ +M + +R
Sbjct: 69 QLGGADKSALVKCA-IIAEQKGFNEINLNLGCPSDKVQAGRFGACLMKEPEHVADCIRAI 127
Query: 365 SKLLSIPFTVKMRTGV-YQDK-KITHTIVPKMSNWGASLITVHGRS--------REARYT 414
+++ IP T K R G+ QD + + + G + +H R ++ R
Sbjct: 128 KQVVGIPVTAKTRIGIDNQDSYEFFRSFSLHLVEAGCDKLIIHARKAWLNGLNPKQNRTI 187
Query: 415 KSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
+++Y+ + + NG+I + E E+ V GVM+GR A P+ E
Sbjct: 188 PPVNYDYVYELKKEIPHIFITINGNILTVE---EINNHLKHVDGVMLGRLACDNPYQIAE 244
Query: 475 IKEQKIWDISSKDRFEILKKYSNY 498
I + + R ++L Y +Y
Sbjct: 245 IHQALYPEFIKIKRSQLLMNYLDY 268
>UniRef50_A6GGZ7 Cluster: Putative uncharacterized protein; n=2;
Bacteria|Rep: Putative uncharacterized protein -
Plesiocystis pacifica SIR-1
Length = 362
Score = 52.0 bits (119), Expect = 4e-05
Identities = 49/214 (22%), Positives = 90/214 (42%), Gaps = 16/214 (7%)
Query: 275 EMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNI 334
EM C ++L G ++ ++ H +E Q+ G++P + A++ E D +++N+
Sbjct: 52 EMVTCPAVLHGDREH--ILGYHPSEHPLALQLGGDDPEALAACARIAAE-LGYDEVNINV 108
Query: 335 GCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTI--VP 392
GCP D + G +M + V + + +P TVK R GV + + + V
Sbjct: 109 GCPSDRVQSGNFGVCLMKDPARVRDCVVAMREAVELPVTVKHRIGVDELDRYEDMLHFVD 168
Query: 393 KMSNWGASLITVHGRS--------REARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYE 444
++ L TVH R ++ R + + A+ V NG + +
Sbjct: 169 VVAAAEPDLFTVHARKAWLQGLSPKQNRNVPPLRYAEVHRLARERPGVFVEINGGFKTAD 228
Query: 445 DYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQ 478
E + V VM+GR A PW+F + ++
Sbjct: 229 AIAEQLE---RVDAVMLGRAAWDDPWLFAAVDQR 259
>UniRef50_A1RNI1 Cluster: TIM-barrel protein, yjbN family; n=30;
Bacteria|Rep: TIM-barrel protein, yjbN family -
Shewanella sp. (strain W3-18-1)
Length = 343
Score = 51.6 bits (118), Expect = 6e-05
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 14/192 (7%)
Query: 296 HETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLP 355
++ E Q+ G+NP + + A+L E D ++LN+GCP D + G+ +M
Sbjct: 72 NQEEHPLALQLGGSNPQDLARCAKLAAERG-YDEVNLNVGCPSDRVQNGRFGACLMAEPE 130
Query: 356 ALETSVRCASKLLSIPFTVKMRTGV-YQDK-KITHTIVPKMSNWGASLITVHGRS----- 408
+ V +++ IP TVK R G+ QD + + ++ G + T+H R
Sbjct: 131 LVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTYFIDIVNAKGCTDFTIHARKAWLQG 190
Query: 409 ---REARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGA 465
+E R D+E + + + NG + + E + + + GVM+GR A
Sbjct: 191 LSPKENREIPPLDYERVYQLKRDYPVLNISINGGVTTLE---QAQGHLAQLDGVMMGREA 247
Query: 466 LIKPWIFNEIKE 477
P+I + +
Sbjct: 248 YQNPYILARVDQ 259
>UniRef50_Q6BX60 Cluster: Debaryomyces hansenii chromosome B of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome B of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 374
Score = 51.6 bits (118), Expect = 6e-05
Identities = 60/257 (23%), Positives = 109/257 (42%), Gaps = 26/257 (10%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGAD------VTCGEMALCESLLKG-------LK 287
++++ KL L+P+ G +P R + +GAD + ++ CE ++ L
Sbjct: 2 VEYSGKLALAPMVRSGEIPTRLMALRYGADLVWTPEIVDKKLIKCERVINDDLGTVDFLD 61
Query: 288 QEWALVKRHETEDLFGA---QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKK 344
+V R + G QI +P + + A+++ + ++D IDLN GCP
Sbjct: 62 PNKKVVFRTYPAEELGKLIFQIGSADPELAVQAAKIVAQ--DVDGIDLNCGCPKPFSTHS 119
Query: 345 GGGSGMMHRLPALETSVRC----ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGAS 400
G G+ ++ LE +R K+ IP + K+R D + ++ ++ G S
Sbjct: 120 GMGAALLTTPDLLELILRNLVSEVGKVYDIPISAKIRLLDDTDVTPSLELIDRLCKTGIS 179
Query: 401 LITVHGRSREARYTKSSDWEYIETCAQA--ATPCPVYGNGDIFSYEDY-VEMRKIAPTVK 457
+T+H R+ R + +++ + A NG I S ++ + RK V
Sbjct: 180 NLTLHCRTPRMRNRDTPVRDFLPSIIDTVHANNVSFIINGSIRSRREFHLLQRKYGEKVG 239
Query: 458 GVMIGRGALIKPWIFNE 474
G MI A P +F E
Sbjct: 240 G-MIAESAESNPTVFAE 255
>UniRef50_A6RW05 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 278
Score = 51.6 bits (118), Expect = 6e-05
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 330 IDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHT 389
+D+N GCP G+ +MH+ + V+ A L R G K + T
Sbjct: 63 VDINCGCPQSWACACSIGAALMHKRELVAEMVKEAKSALK-------RDGFEGKKTVRET 115
Query: 390 I--VPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYV 447
I + + + G IT+HGR R + + E I+ T P NGDIF+ D
Sbjct: 116 IDFINTVQDAGVDFITIHGRMRSTPSSHPVNLEAIKLLTTHTT-VPTLSNGDIFTLSDAF 174
Query: 448 EMRKIAPTVKGVMIGRGALIKPWIF 472
V GVM RG L P +F
Sbjct: 175 H-HTSHTGVSGVMSARGLLENPALF 198
>UniRef50_O51243 Cluster: Putative uncharacterized protein BB0225;
n=3; Borrelia burgdorferi group|Rep: Putative
uncharacterized protein BB0225 - Borrelia burgdorferi
(Lyme disease spirochete)
Length = 335
Score = 51.2 bits (117), Expect = 8e-05
Identities = 61/280 (21%), Positives = 118/280 (42%), Gaps = 30/280 (10%)
Query: 244 NNKLYLSPLTTVGNLPFRRICKEFGADVTC-GEMALCESLLKGLKQEWALVKRHETEDLF 302
N K+ ++P+ + + FR + + VT M +S++ G ++ +VK++ E
Sbjct: 4 NRKISIAPMVNITDEHFRYLIRLLSKKVTLYTPMISAKSIIMGDVKK--IVKQNPLESPI 61
Query: 303 GAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
QI N+ K Q+L+++ D +LN+GCP I G+ +M + ++
Sbjct: 62 AIQIATNSKNDALKAIQILEKHFNFDEYNLNVGCPSLKIQNANCGACLMGNANQVGEILK 121
Query: 363 CASKLLSIPFTVKMRTGV------YQDKKITH--TIVPKMSNWGASLITVHGR------- 407
+ + P ++K R G+ Y+++ + V +S++G VH R
Sbjct: 122 TMKENTNKPISIKHRLGIRPLSSDYKNESYSEVKNFVKIISDFGIKNFIVHARIAILKGF 181
Query: 408 -SREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGAL 466
+ R E++ + + NG I + E +++K V VMIGR A
Sbjct: 182 SPKNNRNIPKLRHEFVYKLKKENKNLFIEINGGINNSE---QIKKHLSFVDSVMIGRSAF 238
Query: 467 IKPWIFNEIKEQKIWD----ISSKD----RFEILKKYSNY 498
P+ + + + ++ KD E +K+Y NY
Sbjct: 239 ENPYFIANASREFLNETDEILTRKDILMQMVEYIKEYENY 278
>UniRef50_Q0VPD7 Cluster: TIM-barrel protein, yjbN family; n=4;
Bacteria|Rep: TIM-barrel protein, yjbN family -
Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM
11573)
Length = 348
Score = 51.2 bits (117), Expect = 8e-05
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 16/210 (7%)
Query: 275 EMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNI 334
EM + +++L G + + + ++ E Q+ G++P + + ++ + D I+LN+
Sbjct: 63 EMVVAQAILHGDRDRF--LDFNDEEHPVALQLGGSDPQQLAQATRIAGDYG-YDEINLNV 119
Query: 335 GCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGV--YQDKKITHTIVP 392
GCP D + + G+ +M + V +++P TVK R G+ D + V
Sbjct: 120 GCPSDRVQQGKIGAILMAEPELVARCVEAMQAEVTVPVTVKTRIGIDDQDDYDFLYRFVD 179
Query: 393 KMSNWGASLITVHGRS--------REARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYE 444
+M G + +T+H R +E R ++ A + NG + +
Sbjct: 180 RMEASGCTSLTIHARKAILSGLSPKENRDIPPLIYQRAYAIKHAFPHIEIILNGGVKTLN 239
Query: 445 DYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
E+ + V GVMIGR A P+ E
Sbjct: 240 ---EVHEHMGEVDGVMIGREAYQNPYFLAE 266
>UniRef50_A7DKP5 Cluster: Dihydrouridine synthase, DuS; n=2;
Methylobacterium extorquens PA1|Rep: Dihydrouridine
synthase, DuS - Methylobacterium extorquens PA1
Length = 354
Score = 50.8 bits (116), Expect = 1e-04
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 14/187 (7%)
Query: 299 EDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALE 358
E Q+ G+NP + A++ + + I+LN+GCP D + G+ +M +
Sbjct: 81 EQPLAVQLGGSNPDDLAAAARIAADFGYAE-INLNVGCPSDRVQDGRFGACLMREPGLVG 139
Query: 359 TSVRCASKLLSIPFTVKMRTGV-YQD-KKITHTIVPKMSNWGASLITVHGRS-------- 408
V + +P TVK R GV QD ++ + + G + VH R
Sbjct: 140 ACVAALKAAVPVPVTVKCRLGVDDQDIEEALDAVADAVVAAGGDGLVVHARKAWLKGLSP 199
Query: 409 REARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIK 468
RE R D+ + +A P+ NG I D + V GVMIGR A +
Sbjct: 200 RENRDVPPLDYGRVARLKRAHPDLPIAVNGGI---ADIAAAKARLGEVDGVMIGRAAYTE 256
Query: 469 PWIFNEI 475
P + ++
Sbjct: 257 PALLLDV 263
>UniRef50_Q6C002 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 394
Score = 50.8 bits (116), Expect = 1e-04
Identities = 60/287 (20%), Positives = 120/287 (41%), Gaps = 35/287 (12%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLL----------------- 283
+ + KL L+P+ G P R + ++GAD+ + + +L
Sbjct: 2 VSYAGKLVLAPMVRSGEFPTRLLSIKYGADLVWSPEIVDKKMLECTREWNEKTKTVDFTV 61
Query: 284 ----KGLKQEWALVKR-HETE-DLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCP 337
KG ++ A++ R E E D Q+ NP I +++ + ++ IDLN GCP
Sbjct: 62 SQQGKGNTEKKAIIFRTSEAERDKIIFQVGSANPEIAVAACKMVAK--DVAGIDLNCGCP 119
Query: 338 IDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPF--TVKMRTGVYQDKKITHTIVPKMS 395
G G+ ++ L + K + PF ++ ++ + + ++ T +V +++
Sbjct: 120 KHFSMHAGMGAALLKTPDKLVAILEALVKEVGEPFNVSISVKIRLLETEEKTLELVDRLA 179
Query: 396 NWGASLITVHGRSREAR----YTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRK 451
G +T+H R+ R + + + E C + C V NGD+ + ++++
Sbjct: 180 QTGVKNLTIHCRTTPMRPREPVIRDTLAKVAEVCHKHGITCLV--NGDVEGRHELADLQE 237
Query: 452 IAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNY 498
+ G MI R A F + W +K+ +I ++Y N+
Sbjct: 238 -KYGIDGAMIARAAEANASCF-RAEGMLPWQQVTKEYLDICREYDNF 282
>UniRef50_A2EF32 Cluster: Dihydrouridine synthase, putative; n=1;
Trichomonas vaginalis G3|Rep: Dihydrouridine synthase,
putative - Trichomonas vaginalis G3
Length = 318
Score = 50.4 bits (115), Expect = 1e-04
Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 9/232 (3%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICG 308
L+P+ + +L +R + + G V M +G + + AQI G
Sbjct: 22 LAPMAEISDLSWRMLIRNHGVKVCWTGMLNAHQWSQGSGYQNKFFNTCPEDHPLIAQIAG 81
Query: 309 NNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKL- 367
+N VA D +D+N+GC + + G M+ E ++ +L
Sbjct: 82 SNEDQDLIVAAAKDLAKYADGVDVNLGCTQKIASRSEYGYFMVDNCQKREKTLELFRRLC 141
Query: 368 --LSIPFTVKMRTGVYQD----KKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEY 421
++ P K+R + +KIT K+ G SL+ VHGR+ E
Sbjct: 142 KEVNCPICAKIRIFIDDSGEVSEKITIDFAKKLEEAGVSLLQVHGRAEHRNKQADVYNEI 201
Query: 422 IETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFN 473
I+ QA PV NG I + ED + + GV + + L P F+
Sbjct: 202 IKHIVQAVN-IPVVANGGINTVEDAHKFME-ETGAAGVSVAQALLKDPTAFD 251
>UniRef50_A6RVN2 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 1174
Score = 50.4 bits (115), Expect = 1e-04
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 366 KLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKS--SDWEYIE 423
K L +P T K+R + ++ T + + GAS++TVHGR+RE + K+ ++WE +
Sbjct: 790 KELDVPVTAKIR--ILDTREKTLDYAKMVISAGASILTVHGRTREMKGHKTGLANWEMLR 847
Query: 424 TCAQA-ATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNE 474
++ ++ NG+I + ED + K A GVM G L P IF++
Sbjct: 848 FLRESLPKEVVLFVNGNILAREDIDDCLK-ATGADGVMSAEGNLYDPTIFSD 898
>UniRef50_A6U9Y2 Cluster: Dihydrouridine synthase DuS; n=2;
Sinorhizobium|Rep: Dihydrouridine synthase DuS -
Sinorhizobium medicae WSM419
Length = 385
Score = 50.0 bits (114), Expect = 2e-04
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 275 EMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNI 334
EM + +++L+G + + L+ +E Q+ GN+P + + A++ E D I++N+
Sbjct: 51 EMIVADAVLRGDRAK--LLGHDASEHPVALQLGGNDPVKMAEAARI-GEAYGYDEINMNV 107
Query: 335 GCPIDLIYKKGGGSGMMHRLPALETSVRCASK-LLSIPFTVKMRTGV-YQDKKIT-HTIV 391
GCP D + G+ +M PAL A K + IP TVK R GV QD ++ +V
Sbjct: 108 GCPSDRVQSGTFGACLMQE-PALVADCIAAMKAAVEIPVTVKCRIGVDDQDPEVALRDLV 166
Query: 392 PKMSNWGASLITVHGR 407
+ G + VH R
Sbjct: 167 KCAKDAGTDGVWVHAR 182
>UniRef50_Q7R3H4 Cluster: GLP_158_49916_51304; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_158_49916_51304 - Giardia lamblia
ATCC 50803
Length = 462
Score = 50.0 bits (114), Expect = 2e-04
Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 17/221 (7%)
Query: 249 LSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALV---KRHETEDL-FGA 304
++P+ LP+R + + +G ++ M +L+ K LV K E+ D
Sbjct: 21 IAPMVDGSELPYRLLTRRYGVELAWTPMHSTNTLVTSSKAMTQLVDELKHGESIDRPLVL 80
Query: 305 QICGNNPYIITKVAQLLQENTE---LDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSV 361
Q+ GNNP L + D ++LN+GCP + + G+ +M L E +
Sbjct: 81 QLSGNNPSNFELAYNTLVQMGAGCCFDVVELNMGCPQAVALRGKYGAYLMGHLDLAEEIL 140
Query: 362 R---CASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKS-- 416
R + + V ++T + K T + ++ + G ++ T+HGR+R R +
Sbjct: 141 RTLVAVTARSGLGHKVAVKTRLDISDKDTVKMCLRLCSTGIAMFTLHGRTRLQRTGSAVG 200
Query: 417 -SDWEYIETC---AQAATPCPV-YGNGDIFSYEDYVEMRKI 452
DW+ + + +A+ P + + NG +++ E + +R +
Sbjct: 201 LPDWQALASILNNLRASYPHLIFFANGGVWNLETHEHLRSL 241
>UniRef50_A5GPV9 Cluster: TRNA-dihydrouridine synthase A; n=21;
Cyanobacteria|Rep: TRNA-dihydrouridine synthase A -
Synechococcus sp. (strain RCC307)
Length = 335
Score = 49.2 bits (112), Expect = 3e-04
Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 19/243 (7%)
Query: 275 EMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNI 334
EM + ++L G +Q+ L+ E Q+ G++P ++ + A+L E D I+LN+
Sbjct: 45 EMVVAQALHHG-RQD-TLLGFDPLEKPIALQLGGDDPALLAEAAELA-ERWGYDEINLNV 101
Query: 335 GCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTI--VP 392
GCP + K G+ +M + V +P TVK R G+ + + V
Sbjct: 102 GCPSPKVKKGRFGACLMAEPQQVARCVEAMGAACRLPVTVKHRIGIDERDSYDELLDFVD 161
Query: 393 KMSNWGASLITVHGRS--------REARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYE 444
++ G VH R ++ R ++ + + V NG + E
Sbjct: 162 TVAAAGCQRFAVHARKAWLEGLDPKQNRTVPPLRYDLVHALKRDRPALIVELNGGL---E 218
Query: 445 DYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSK--DRFEILKKYSNYGLEH 502
++ V GVM+GR A P +N + ++ D ++ E+L+ + EH
Sbjct: 219 SLSACQEQLHAVDGVMVGRAAYAHPLQWNRVDQEIFGDSNATPIKASEVLQGVLPHA-EH 277
Query: 503 WGS 505
W S
Sbjct: 278 WCS 280
>UniRef50_Q7UBC5 Cluster: tRNA-dihydrouridine synthase A; n=231;
Bacteria|Rep: tRNA-dihydrouridine synthase A - Shigella
flexneri
Length = 330
Score = 49.2 bits (112), Expect = 3e-04
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 16/202 (7%)
Query: 297 ETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPA 356
E E Q+ G++P + + A+L E D I+LN+GCP D + G+ +M
Sbjct: 61 EEEHPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119
Query: 357 LETSVRCASKLLSIPFTVKMRTGV-YQDK-KITHTIVPKMSNWG-ASLITVHGRS----- 408
+ V+ ++SIP TVK R G+ QD + + +S G + +H R
Sbjct: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179
Query: 409 ---REARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGA 465
+E R D+ + + + NG I S E E + + GVM+GR A
Sbjct: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLE---EAKAHLQHMDGVMVGREA 236
Query: 466 LIKPWIFNEIKEQKIWDISSKD 487
P I + +++I+ S D
Sbjct: 237 YQNPGILAAV-DREIFGSSDTD 257
>UniRef50_A7AWB5 Cluster: Dihydrouridine synthase (Dus) domain
containing protein; n=1; Babesia bovis|Rep:
Dihydrouridine synthase (Dus) domain containing protein
- Babesia bovis
Length = 362
Score = 47.2 bits (107), Expect = 0.001
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 18/209 (8%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKG-GGSGMMHRLPALETSVRC 363
Q+ GNN ++K + +F +LN+GCP + KG G+ +M+ P + V+
Sbjct: 78 QLGGNNLDSLSKAGNIALGYGYTEF-NLNVGCPSTRVSGKGCFGAALMNDAPLVGRIVKH 136
Query: 364 ASKLLSIPFTVKMRTGV-YQDK-KITHTIVPKMSNWGASLITVHGRS--------REARY 413
L P TVK R GV + D + + +++ G + VH R R+ R
Sbjct: 137 LRSELGTPVTVKHRLGVDHNDSYEFVRDFISTVADQGCTDFIVHARKAWLNGINPRKNRS 196
Query: 414 TKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPW--- 470
D E + Q + NG I S E+ ++ V GVM+GR A P
Sbjct: 197 IPPLDHERVYRLCQEFPNLNISINGGIKSLEEI--KYALSRGVYGVMVGRMAYENPCGLV 254
Query: 471 -IFNEIKEQKIWDISSKDRFEILKKYSNY 498
+ +I + + K R +L+ Y+N+
Sbjct: 255 RVDTDIYGEATNPATCKTRRILLETYANF 283
>UniRef50_A4SY29 Cluster: Dihydrouridine synthase, DuS; n=1;
Polynucleobacter sp. QLW-P1DMWA-1|Rep: Dihydrouridine
synthase, DuS - Polynucleobacter sp. QLW-P1DMWA-1
Length = 347
Score = 46.4 bits (105), Expect = 0.002
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q+ G+ P + + A+L Q+ D IDLN GCP + + + G+ +M + V+
Sbjct: 53 QLGGSEPNDLARSAELAQQ-WGYDEIDLNCGCPSERVQRGAFGACLMAEPKLVADCVKAM 111
Query: 365 SKLLSIPFTVKMRTGV--------YQDKKITHTIVPKMSNWGASLITVHGRS 408
+ IP +VK R G+ +D + + +++ GAS +T+H R+
Sbjct: 112 QNAVDIPISVKHRLGLDSMDAANSEKDYQFALDFIMAVADAGASQVTIHARN 163
>UniRef50_A3AVU4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 190
Score = 46.0 bits (104), Expect = 0.003
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLK 284
+++ +KL L+P+ VG LPFR + E+GAD+T GE + LK
Sbjct: 1 MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLK 44
Score = 37.1 bits (82), Expect = 1.3
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 428 AATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
+A PV NGD+F YED+ + K A VM+ RGA+ IF
Sbjct: 70 SALSIPVIANGDVFEYEDFKRI-KDATGAASVMVARGAMWNASIF 113
>UniRef50_P96192 Cluster: tRNA-dihydrouridine synthase C; n=1;
Azotobacter vinelandii|Rep: tRNA-dihydrouridine synthase
C - Azotobacter vinelandii
Length = 309
Score = 45.6 bits (103), Expect = 0.004
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 7/172 (4%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGG-GSGMMHRLPALETSVRC 363
Q+ G++P + + A L E IDLN GCP +G G R + +S RC
Sbjct: 68 QLLGSDPACLAENAALAAE-LGAPAIDLNFGCPAKTSTARGADGCCSTSRNCCMPSSARC 126
Query: 364 ASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIE 423
A + GV + + + + G + + VH R++ Y + WE++
Sbjct: 127 AGPCRRCAGDRQDAPGV-RPARGRPGVRRALVEGGVAHLVVHARTKVEGYRPPASWEWLA 185
Query: 424 TCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
+A PVY N S + R+I+ V+ VM+G G + +P + +I
Sbjct: 186 RVREAVA-VPVYANRK--SGRRRIGCREIS-GVEDVMLGCGLVSRPDLARQI 233
>UniRef50_A1AW94 Cluster: TIM-barrel protein, yjbN family; n=1;
Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)|Rep: TIM-barrel protein, yjbN family - Ruthia
magnifica subsp. Calyptogena magnifica
Length = 322
Score = 45.2 bits (102), Expect = 0.005
Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 16/211 (7%)
Query: 275 EMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNI 334
EM ++L G K L+ + E Q+ G+ P + + A++ Q+ + I++N+
Sbjct: 36 EMVTARAILYGNKNR--LLDFNVCEHPLVLQLGGSEPKEMAQAAKIAQD-WGYNEININV 92
Query: 335 GCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTI--VP 392
GCP + + G +M + V +++ +P TVK R GV + V
Sbjct: 93 GCPSNRVQSSNFGVCLMQTPQVVAQCVDAMRQMVDVPITVKSRIGVDNMDSYDELVNFVA 152
Query: 393 KMSNWGASLITVHGRS--------REARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYE 444
+ + G + +H R +E R ++E + + + NG I E
Sbjct: 153 TVESSGCDNLVIHARKAWLKGLSPKENRSVPKLNYERVYQIKRDFPHLAIGINGGIMDME 212
Query: 445 DYVEMRKIAPTVKGVMIGRGALIKPWIFNEI 475
++ + V VM+GR +P++ ++
Sbjct: 213 SSLQHLE---HVDSVMLGRAVYHQPYLLRKV 240
>UniRef50_Q59YG4 Cluster: Potential tRNA dihydrouridine synthase;
n=2; Saccharomycetales|Rep: Potential tRNA
dihydrouridine synthase - Candida albicans (Yeast)
Length = 433
Score = 45.2 bits (102), Expect = 0.005
Identities = 59/284 (20%), Positives = 120/284 (42%), Gaps = 33/284 (11%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKG---LKQEWA----LV 293
I++ NKL L+P+ G LP R + +G D+ + + +L+ + QE +V
Sbjct: 2 IEYANKLCLAPMVRSGELPIRLLSLRYGCDLLWTPELVDKKILQSTRIINQELNTIDYIV 61
Query: 294 KRHETED----LFGA----------QICGNNPYIITKVAQLLQENTELDFIDLNIGCPID 339
H+ D +F Q+ ++P + A+ + + ++D IDLN GCP +
Sbjct: 62 SNHQQSDKKTVIFRKHPVETGRLILQLGSSDPQLAVDAARKVID--DVDGIDLNCGCPKN 119
Query: 340 LIYKKGGGSGMMHRLPALETSVRCASKLLSIP--FTVKMRTGVYQDKKITHTIVPKMSNW 397
G G+ ++ L + + + + IP ++ + ++ + + ++ K+
Sbjct: 120 FSTHSGMGAELLKTPDKLCSILINLVEKIGIPNKKSISCKIRLFNNYDQSKNLIEKILQT 179
Query: 398 GASLITVHGRSREARYTKSSDWEYIETCAQAATPCPV--YGNGDIFSYEDYVEMRKIAPT 455
G S +T+H R+ R + W ++ V NG++ + D ++
Sbjct: 180 GISNLTIHCRTPIMRNRQDPVWNFLPKLIPIIQTAGVNLVINGNMQNVADLKNLQSALND 239
Query: 456 VKG----VMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKY 495
G +MI A P +F+ + + I ++ FEI +KY
Sbjct: 240 NGGGKLSIMIAEAAEANPSVFSHSPKPQCLII--QELFEICQKY 281
>UniRef50_A2QES0 Cluster: Contig An02c0390, complete genome; n=12;
Pezizomycotina|Rep: Contig An02c0390, complete genome -
Aspergillus niger
Length = 446
Score = 45.2 bits (102), Expect = 0.005
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
QI P I + A+L+ ++ ID+N GCP G G+ ++ L +
Sbjct: 108 QIGTATPEIAVQAAKLVAG--DVAGIDVNSGCPKPFSTSGGMGAALLKTPDKLVAILEAL 165
Query: 365 SKLLSIPFT--VKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYI 422
K + PF + ++ + +D + T +V ++ G + +TVH R+ R + + + +
Sbjct: 166 VKEVGTPFQIGISVKIRILKDPEETRALVSRLVKTGITGLTVHCRTPPMRPRERAIRDQV 225
Query: 423 ----ETCAQAATPCPVYGNGDIFSY-EDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
+ C +A C + NGD+ S E + M++ V G MI A P F
Sbjct: 226 RMIADICHEAGVACVI--NGDVTSKDEGHALMKEFG--VDGAMIATAAEANPSCF 276
>UniRef50_O51679 Cluster: Histidine phosphokinase/phophatase,
putative; n=3; Borrelia burgdorferi group|Rep: Histidine
phosphokinase/phophatase, putative - Borrelia
burgdorferi (Lyme disease spirochete)
Length = 335
Score = 44.8 bits (101), Expect = 0.007
Identities = 65/276 (23%), Positives = 117/276 (42%), Gaps = 27/276 (9%)
Query: 247 LYLSPLTTVGNLPFRRICKEFGA-----DVTCGEMALCESLLKGLKQ--EWALVKRHETE 299
+ L+P+ V + FR + G+ + E + +L G KQ + +K +E
Sbjct: 18 MILAPMEDVTDTVFRNLIHLIGSAEGEPHIYFTEFISTKGILNGSKQSVQHVFLKPNELN 77
Query: 300 DLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALET 359
AQI GN P + ++L + ID+N+GCP I KKG S +++ +L
Sbjct: 78 RPLIAQIWGNVPEQFYRAIEILG-SMGFWGIDINMGCPKSKIIKKGVCSALINN-KSLAK 135
Query: 360 SVRCASK----LLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGR--SREARY 413
+ ASK ++P +VK R G + + + ++TV+ R +++
Sbjct: 136 EIILASKEACARFNLPLSVKTRHGFSYPE--VDDWLGFLLGLEIDMLTVYPRLAVNQSKG 193
Query: 414 TKSSD--WEYIETCAQAATPCPVYGNGDIFSYED---YVEMRKIAPTVKGVMIGRGALIK 468
+ D +E ++ + + GNGD+ S ++ YV+ + G+M GRG
Sbjct: 194 PVNFDIFYELVKLRNNLSPSTLIIGNGDVLSLKEARYYVDKY----LIDGIMFGRGIFDN 249
Query: 469 PWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWG 504
+F + + D + R ILK + WG
Sbjct: 250 LNLFKPFSKHFL-DSNLNFRLNILKFHIKDFHATWG 284
>UniRef50_UPI000150A3F7 Cluster: hypothetical protein TTHERM_00141090;
n=1; Tetrahymena thermophila SB210|Rep: hypothetical
protein TTHERM_00141090 - Tetrahymena thermophila SB210
Length = 1642
Score = 44.0 bits (99), Expect = 0.011
Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 15/199 (7%)
Query: 17 LQKSNII---EEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQN-K 72
+QKSNI EE S E +K A D+ ++ + +++I ++K +K N K
Sbjct: 1230 IQKSNIFAIKEEVSVTQETQKTQPQKALVDNYIIDISQ-QVQINAQNQNNKEEKMNINDK 1288
Query: 73 SRPKIFKDGKESKPCPTILDVESSEQLKICQYNNCKFIHDSKQFL-NSKPKDIGDQCHVY 131
K +SK L+ E +Q K +N + I + Q N+ +D Q +Y
Sbjct: 1289 LISKNESKENQSKSVDISLNNERKQQEK---HNISQIIIEKSQVTSNNINQDYIKQNQLY 1345
Query: 132 KVRGKCPRGIA-CRYGSDHITADGFNIVNREKFDQWKDDTKNTLQPSLQTQLQKKKYNFD 190
+++ + GI G + + F + K Q K D + Q S+ +Q+Q ++N
Sbjct: 1346 EIKEESSVGIQNLNIGMNDVNKKDFQ---KNKIQQIKQDV-SVSQDSV-SQVQSIQFNIQ 1400
Query: 191 LAEKLVKHLDTRNKSVDKN 209
+ ++++ L+ + K + KN
Sbjct: 1401 VQQEVISQLEIQKKDIQKN 1419
>UniRef50_Q4PIC3 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 364
Score = 44.0 bits (99), Expect = 0.011
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 22/185 (11%)
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMM--HRLPALETSVR 362
Q+ GNN + + A+ + D IDLN+GCP + G+ ++ P + V
Sbjct: 91 QLAGNNVQQLVEAARRVAPYA--DAIDLNLGCPQRHAEQGHYGACLLPKQNWPLVAEIVS 148
Query: 363 CASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGR-SREARYTKS-SDWE 420
+ + +P T K+R V K+ T + +++ G+SL+TVH R + AR K +D +
Sbjct: 149 GMVQAVDVPITTKIRLPV--PKEQTAQLAVMLAHAGSSLVTVHPRFASSARRRKGLADLD 206
Query: 421 YI-------------ETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALI 467
+ + Q V NG++ ++D V ++ GVM+G L
Sbjct: 207 QVVKVREALQAQGLLRSAEQPHKDTAVVSNGNVQCWQDVVNNLELT-GASGVMVGETLLQ 265
Query: 468 KPWIF 472
P +F
Sbjct: 266 NPALF 270
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.317 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,681,116
Number of Sequences: 1657284
Number of extensions: 31093427
Number of successful extensions: 101948
Number of sequences better than 10.0: 441
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 100590
Number of HSP's gapped (non-prelim): 1032
length of query: 591
length of database: 575,637,011
effective HSP length: 105
effective length of query: 486
effective length of database: 401,622,191
effective search space: 195188384826
effective search space used: 195188384826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 75 (34.3 bits)
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