GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001335-TA|BGIBMGA001335-PA|IPR001269|Dihydrouridine
synthase, DuS
         (591 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   1.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   4.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   4.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   4.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   4.5  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   4.5  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   4.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   5.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   7.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   7.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   7.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 458  GVMIGRGALIKP---WIFNEIKEQKIWDISSKDRFEILKKYSNYGLE--HWGSDTQGVES 512
            GV+ G   +  P   W     K+ KI   +S+     LKKY+NY +E   + S   GV +
Sbjct: 1131 GVIKGYKVIYGPSDTWFDENTKDTKI-TAASETILHGLKKYTNYSMEVLAYTSGGDGVRT 1189

Query: 513  T 513
            T
Sbjct: 1190 T 1190


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 41   SFDDNNLEFKKTKIEITEDKNDS-KTKKRGQNKSRPKIFKDGKES 84
            S+    +  KKTK E+ E+K  + + K++ + KS     + G  S
Sbjct: 1058 SWGTREVAVKKTKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGTS 1102


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 41   SFDDNNLEFKKTKIEITEDKNDS-KTKKRGQNKSRPKIFKDGKES 84
            S+    +  KKTK E+ E+K  + + K++ + KS     + G  S
Sbjct: 1058 SWGTREVAVKKTKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGTS 1102


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 41   SFDDNNLEFKKTKIEITEDKNDS-KTKKRGQNKSRPKIFKDGKES 84
            S+    +  KKTK E+ E+K  + + K++ + KS     + G  S
Sbjct: 1058 SWGTREVAVKKTKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGTS 1102


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 41   SFDDNNLEFKKTKIEITEDKNDS-KTKKRGQNKSRPKIFKDGKES 84
            S+    +  KKTK E+ E+K  + + K++ + KS     + G  S
Sbjct: 1058 SWGTREVAVKKTKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGTS 1102


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 229 DLIKLLPRERKTIDWNNKLYLSPLTTVGNLP 259
           D + L P E    D N      PLT + N+P
Sbjct: 254 DFLSLHPAETSMNDANRNDCAKPLTQIRNIP 284


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 229 DLIKLLPRERKTIDWNNKLYLSPLTTVGNLP 259
           D + L P E    D N      PLT + N+P
Sbjct: 254 DFLSLHPAETSMNDVNRNDCAKPLTQIRNIP 284


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 442  SYEDYVEMRKIAPTVKGVMIGRG 464
            SY+D  E+R+ +  VK + +G G
Sbjct: 2636 SYDDIAEIRRKSRLVKALKLGGG 2658


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 3   NSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKND 62
           N++ G  ++       K  +IEE S + E   L  S       N      K+E   +  +
Sbjct: 143 NNSNGASSVGSSSPFDK--LIEEDSRSNEDTSLHPSPRITKKANSV--SVKVENRRNSPN 198

Query: 63  SKTKKRGQNKSRPKIFKDGKESKPCP 88
           S  KK G +K  PK  +D    K  P
Sbjct: 199 SCEKKIGLSKISPKESQDAANVKLSP 224


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 3   NSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKND 62
           N++ G  ++       K  +IEE S + E   L  S       N      K+E   +  +
Sbjct: 91  NNSNGASSVGSSSPFDK--LIEEDSRSNEDTSLHPSPRITKKANSV--SVKVENRRNSPN 146

Query: 63  SKTKKRGQNKSRPKIFKDGKESKPCP 88
           S  KK G +K  PK  +D    K  P
Sbjct: 147 SCEKKIGLSKISPKESQDAANVKLSP 172


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 3   NSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKND 62
           N++ G  ++       K  +IEE S + E   L  S       N      K+E   +  +
Sbjct: 274 NNSNGASSVGSSSPFDK--LIEEDSRSNEDTSLHPSPRITKKANSV--SVKVENRRNSPN 329

Query: 63  SKTKKRGQNKSRPKIFKDGKESKPCP 88
           S  KK G +K  PK  +D    K  P
Sbjct: 330 SCEKKIGLSKISPKESQDAANVKLSP 355


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,525
Number of Sequences: 317
Number of extensions: 6675
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 11
length of query: 591
length of database: 114,650
effective HSP length: 61
effective length of query: 530
effective length of database: 95,313
effective search space: 50515890
effective search space used: 50515890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)