Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001335-TA|BGIBMGA001335-PA|IPR001269|Dihydrouridine
synthase, DuS
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 324 2e-89
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 89 2e-18
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 86 1e-17
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 69 2e-12
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 35 0.028
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 33 0.084
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 33 0.084
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 32 0.19
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 31 0.34
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 31 0.59
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 30 0.78
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 30 1.0
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 29 1.4
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 29 1.8
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 29 2.4
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 28 3.2
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 28 3.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 5.5
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 27 7.3
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 27 7.3
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 9.7
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 27 9.7
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 9.7
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 27 9.7
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 9.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 9.7
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 9.7
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 27 9.7
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 27 9.7
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 324 bits (796), Expect = 2e-89
Identities = 173/427 (40%), Positives = 254/427 (59%), Gaps = 32/427 (7%)
Query: 194 KLVKHLDTRNKSVDKNLNTSADVG-EDIKIGAVTDEDLIKLLPRERKTIDWNNKLYLSPL 252
K + + V KN S +V ++I A ++ L L P+E+ IDW ++ L+PL
Sbjct: 187 KETESVSLEETGVLKNQTVSVNVDLKEISSQARSNIALPTLRPQEKNLIDWRDRKILAPL 246
Query: 253 TTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVK--RHETE-------DLFG 303
TTVGN PFRR+C GAD EMA+C L++G + EWALV+ +E E + G
Sbjct: 247 TTVGNPPFRRLCGSLGADTFYSEMAMCYPLMQGHQPEWALVRGLNYEREMMRGGRRGILG 306
Query: 304 AQICGNNPYIITKVAQLLQENTE-LDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVR 362
Q+ + TK AQ++ E + +DF+DLN GCPIDL++++G GS ++ L +++
Sbjct: 307 VQLATGKLWQATKTAQVIAEQCDGVDFLDLNCGCPIDLVFRQGAGSSLLENPGRLLRNLQ 366
Query: 363 CASKLLS-IPFTVKMRTGVYQDKKITHTIVPKMSN-WGASLITVHGRSREARYTKSSDWE 420
+ IP TVK+R G D + ++ ++ N S T+HGRSR+ RY+K+++W+
Sbjct: 367 GMDAVSGQIPVTVKLRMGNKDDHPVVKNLIGRIFNETNTSAATLHGRSRQQRYSKNANWD 426
Query: 421 YIETCAQAAT-----------------PCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGR 463
YI A P + GNGD +S++D+ + + V VMI R
Sbjct: 427 YIGEIASKVKSMNERIDELPEDSLRTQPLSLIGNGDCYSWQDWYD--GVNKGVDTVMIAR 484
Query: 464 GALIKPWIFNEIKEQKIWDISSKDRFEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSF 523
GAL+KPWIF EI+ ++ D SS R E+L++Y N GLE+WGSD+QGV +TRRF LE++SF
Sbjct: 485 GALVKPWIFEEIEARQFIDKSSTQRLEMLEQYCNNGLEYWGSDSQGVNTTRRFFLEFMSF 544
Query: 524 LYRYVPVGLLERPPQRINERPPTYFGRDDLETLMASSNCTDWIKISEMLLGPVPDGFQFL 583
+RY P+ L E R+N+RPP Y RD++ETL+AS+ TDW+K+SE LGP P+ F F
Sbjct: 545 FHRYTPIALYEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGPTPERFTFT 604
Query: 584 PKHKANS 590
PKHK+NS
Sbjct: 605 PKHKSNS 611
Score = 77.8 bits (183), Expect = 4e-15
Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 56 ITEDKNDS-KTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKICQYN-NCKFIHDS 113
+ +D N K K+RGQNK R KI + + CP I + + C Y NCKF HD
Sbjct: 17 VKQDGNKKRKRKERGQNKRREKIHVK-ENNALCPAI-SIGNE-----CPYKENCKFPHDV 69
Query: 114 KQFLNSKPKDIGDQCHVYKVRGKCPRGIACRYGSDH--ITADGFNIVNREKFDQWKDDTK 171
+ +L +K DIGD+C +++ G CP G CR+ + H I ADG + ++ Q+ T
Sbjct: 70 EAYLATKAPDIGDKCPIFERYGVCPAGFKCRWLAGHVVINADGKYELIKKPDGQFTLFTV 129
Query: 172 NTLQPSLQTQLQKKKYNFDLAEKLV 196
NT+ +Q +L+ K+ + AE ++
Sbjct: 130 NTVGKEVQRKLRTKQLDLSKAESII 154
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 88.6 bits (210), Expect = 2e-18
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 5/228 (2%)
Query: 250 SPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGN 309
+P+ LPFR++ +++ D+ M L + L K + ++ + Q +
Sbjct: 25 APMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHP-KGRYFDFSTNDADASLILQFGVD 83
Query: 310 NPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLS 369
+P I+ K AQL+ +D I +N GCP ++G GS ++ + VR L
Sbjct: 84 DPVILEKAAQLV--GPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAVKSTLG 141
Query: 370 IPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQAA 429
F +++ + +D T ++ + GA +ITVHGR+R+ R + + + I +
Sbjct: 142 ESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTRQDRSSFPVNLDAIRE-VRPC 200
Query: 430 TPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKE 477
PV NGD+ S +E+ K T +G+M RG L P +F +E
Sbjct: 201 VQIPVVANGDVKSLRKGLEIAKYTET-QGIMSARGLLENPALFAGYEE 247
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 86.2 bits (204), Expect = 1e-17
Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 14/234 (5%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWA----LVKRHETEDL 301
K L+P+ LP+R + + GAD+ M S L G +++ + E
Sbjct: 19 KRILAPMVDQSELPWRILARRSGADLCYSPMF--HSRLFGESEDYRNKVFSTRTIPEERP 76
Query: 302 FGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSV 361
Q CGN+P I+ K A++ D +D+N+GCP + K GS + +E+ +
Sbjct: 77 LIIQFCGNDPEIMLKAAKIAAPYC--DAVDVNLGCPQGIAKKGKYGSFLQENWNLIESII 134
Query: 362 RCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREAR--YTKSSDW 419
LSIP T K+R ++ D + T + GAS++ VHGR RE + +T +DW
Sbjct: 135 TKLHTELSIPVTAKIR--IFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIADW 192
Query: 420 EYIETCAQ-AATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIF 472
E I+ + + ++ NG+I +D K V GV+ G+L P IF
Sbjct: 193 EQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYT-GVDGVLSAEGSLYNPRIF 245
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 68.9 bits (161), Expect = 2e-12
Identities = 60/248 (24%), Positives = 113/248 (45%), Gaps = 26/248 (10%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQEWAL-------- 292
++++NK+ L+P+ +G LP R + +GA++ G + ++LL G E +
Sbjct: 4 LNYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVERVVNDRINCID 63
Query: 293 -VKRHETEDLFGA----------QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLI 341
VK + LF Q+ +P + + A+L+ ++ IDLN GCP
Sbjct: 64 FVKPPSNKVLFRVHPLEANRLIFQLGSASPELAVEAAKLVAN--DVAGIDLNCGCPKHFS 121
Query: 342 YKKGGGSGMMHRLPALETSVRCASKLLSIPF--TVKMRTGVYQDKKITHTIVPKMSNWGA 399
G G+G++ L + + + P+ ++ + + + K+ T +V ++ + G
Sbjct: 122 VHAGMGAGLLKNQDRLVSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGV 181
Query: 400 SLITVHGRSREARYTKSSDWEYIETCAQAA--TPCPVYGNGDIFSYEDYVEMRKIAPTVK 457
ITVH R+ R T+ +D Y+ + NGD+ SY D +++ + V
Sbjct: 182 RAITVHCRTTPMRNTEPADRSYLSEIVGVCRNKDVSILVNGDVLSYNDGLDVIE-KYGVD 240
Query: 458 GVMIGRGA 465
GV+I R A
Sbjct: 241 GVLIARAA 248
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 35.1 bits (77), Expect = 0.028
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 1 MKNSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDK 60
+K + A+KD+ VLQ+ N +++ +K E +N E + I + ++
Sbjct: 40 IKTKVKDINALKDQLVLQEVNHEHKENVLTKKINFLEQQLQSSNNQAEESRNLISVLRNE 99
Query: 61 NDS-KTKKRGQNKSRPKIFKDGKESKPCPTILDVES---SEQLKICQ 103
N+S KT QNK + + + + + L +S SEQL I +
Sbjct: 100 NESLKTNLENQNKRFDALTTENQSLRRANSELQEQSKIASEQLSIAK 146
Score = 29.1 bits (62), Expect = 1.8
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 160 REKFDQWKDDTKNTL--QPSLQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSADVG 217
REK + K D N + L++QLQ +K E + N+ + +LN+S
Sbjct: 1257 REKIETLKTDLANFRLNKEQLESQLQTEKAAVKKLENSNEEYKRHNQEILLSLNSSTSTS 1316
Query: 218 ED---IKIGAVTDEDLIKLLPRE 237
D +K V+ E+LI+ L +E
Sbjct: 1317 SDASRLKNELVSKENLIEELNQE 1339
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 33.5 bits (73), Expect = 0.084
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 239 KTIDWNNKLYLSP----LTTVGNLPFRRICKEFGADVTCGEMALC 279
K + WNNK YL L VGN P C+ + A+ CG+ A C
Sbjct: 180 KYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYYNANGICGKGAAC 224
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 100 KICQYNNCKFIHDSKQFLNSKPKDIGDQ-----CHVYKVRGKCPRGIACRY 145
K +NN ++ K+FL K++G+ C Y G C +G ACR+
Sbjct: 180 KYLYWNNKSYLLKKKRFL----KEVGNSPSAVYCRYYNANGICGKGAACRF 226
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 33.5 bits (73), Expect = 0.084
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 4 SNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIE--ITEDKN 61
S AG A++D+ L K +++ N+E E A + N E++ TK+E IT K
Sbjct: 131 SRAGAIAVQDDSPLWK--YLKDLVMNIE-----EPQARWLSENPEYEVTKVEKIITSQKE 183
Query: 62 DSKTKKRGQNK 72
+ TKK G+N+
Sbjct: 184 NQGTKKEGKNE 194
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 32.3 bits (70), Expect = 0.19
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 102 CQYNN-CKFIHDSKQFLNSK--PKDIGDQCHVYKVRGKCPRGIACRYGSDHITA 152
C+Y + C+F H +++ PK ++C + + G CP G+ C + D A
Sbjct: 341 CRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCCFLHDESNA 394
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 31.5 bits (68), Expect = 0.34
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 7 GVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTK 66
G +++ Y+ +KS +EE+ +L K+K + + F++++L K T+ K+ +T
Sbjct: 115 GALKVENGYLYEKSRKLEEEMAHL-KKKCNVYKSKFEESSLRCKSLYSSNTKLKDSMETM 173
Query: 67 KR 68
KR
Sbjct: 174 KR 175
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 30.7 bits (66), Expect = 0.59
Identities = 12/62 (19%), Positives = 27/62 (43%)
Query: 431 PCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFE 490
P P I + + E + V+ G ++ PW+ ++ E+ +W+ K++
Sbjct: 600 PMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLWNEDMKNKLV 659
Query: 491 IL 492
+L
Sbjct: 660 ML 661
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 30.3 bits (65), Expect = 0.78
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 14 EYVLQKS-NIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKK 67
EY KS +II E S+N R+LD+S D+N + TK + + +N +K
Sbjct: 86 EYTASKSPSIISEASHNSPSRELDDSG---DENTSKLTGTKQSMLKARNRQAAQK 137
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 29.9 bits (64), Expect = 1.0
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 489 FEILKKYSNYGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYF 548
++I +Y + G+ H S + + + + F Y V L P RI + PP
Sbjct: 615 WDICSRYLHGGMFHPSSKSTINDKLELYFNDH-EFSYLMVQENYLNTTPDRIRQEPPKMS 673
Query: 549 GRDDLETLMASSNC-TDWIKISEMLLGPVPDGFQFLPKH 586
LE + +++N +D + M+ GP + +P H
Sbjct: 674 HLKHLELISSAANSFSDSDLVDSMIHGP-QQHWSLMPTH 711
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 29.5 bits (63), Expect = 1.4
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 10 AIKDEYVLQKSNIIEEKSYNLEKRKLD-ESSASFDDNNLEFKKTKIEITEDKNDSKTKKR 68
++ DE ++++ +EE N E+ +D E SA D+ LE ++ + E + +KK
Sbjct: 46 SVLDEQEIEEA--LEEDDTNYEEDIIDDEESAQVDEEELEEEEEEEEDATPEPVVTSKK- 102
Query: 69 GQNKSRPKIFKDGKESKPCPTILDVESSEQLK 100
++S+PK K T++D E SE L+
Sbjct: 103 -NSRSKPKNGGASKRKASRRTVVD-EDSENLE 132
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 177 SLQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSADVGED---IKIGAVTDEDLIKL 233
SL Q++ + FD K H++ R +++ LNT+ + + +IG+ D +L
Sbjct: 788 SLSGQIENLSHEFDAIIKERAHIEARKTALEYELNTNLYLRRNPLKAEIGSDNRIDESEL 847
Query: 234 LPRERKTIDWNNKLYLSPLTTVG 256
+R + + NKL + ++ G
Sbjct: 848 NSVKRSLLKYENKLQIIKSSSSG 870
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 2.4
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 1 MKNSNAGVCAIKDEYVLQKSNIIEEKS--YNLEKRKLDESSASFDDNNLEFKKTKIEITE 58
++N +K + S + + KS + K+ L S +F D+N +F K TE
Sbjct: 119 LENEQKSYEEMKQNMAINNSRLADLKSKLHPYLKKGLKISHDNFSDSN-DFSFQKKLNTE 177
Query: 59 DKNDSKTKKRGQNKSRPKIF 78
D N SKT K + K F
Sbjct: 178 DSNTSKTSTLDMYKEKLKPF 197
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 12 KDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKT 65
K+ +KS +EK +K K DD++ + +K K+ E K SK+
Sbjct: 136 KESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSKS 189
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 187 YNFDLAEKLVKHLDTRNKSVDKNLNTSA 214
+N DL K K + S+ KNLNTS+
Sbjct: 164 FNLDLFPKFSKQQQIESSSISKNLNTSS 191
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 270 DVTCGEMALCESLLKGLKQEWALVKRH---ETEDLFGAQ 305
D CG+ +C+ L + L +E ++ H E D+ GAQ
Sbjct: 1194 DTGCGKTTVCQILAECLHKELHIINAHQDTENGDIIGAQ 1232
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 27.1 bits (57), Expect = 7.3
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 132 KVRGKCPRGIACRYGSDHITADGFNIVNREKFDQWKDDTKNTLQPSLQTQLQKKKYN--F 189
KV R A R G+ + D ++ E + QWKDDT + Q K+YN F
Sbjct: 170 KVDAAMTRLGATRVGNLGLGDDAAGMLE-EDYLQWKDDTLPEIGKLFHLQEVHKEYNPMF 228
Query: 190 DLAEK 194
++ EK
Sbjct: 229 EVIEK 233
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 1 MKNSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDK 60
++ S+ +C + Y L++ I+ + + KR+ DE SA+ N K E + +
Sbjct: 382 IQESSLSICEDRLRYTLKQLGILYDGDVDWSKRQDDEISATLRSLNARLKVVSDENEKMR 441
Query: 61 N 61
N
Sbjct: 442 N 442
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 25 EKSYNLEKRKLDESSASFDDNNLEF-KKTKIEITEDKNDSKTKKRGQNKS 73
EKS N KL E++ +F++ EF ++ K I ++K S + N++
Sbjct: 251 EKSLNERATKLSEANENFNNRFKEFEEREKSAIKQNKEQSSEGSKTANQT 300
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 506 DTQGVESTRRFLLEWLSFLY 525
D Q VE + RF+L ++SFLY
Sbjct: 142 DVQSVEISLRFVLHFVSFLY 161
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 82 KESKPCPT-ILDVESSEQLKI-CQYNNCKFIHDSKQFLNSKPKDIGDQC 128
KE+K P +++ Q+ + CQ N F +K+ L +K G QC
Sbjct: 389 KENKKAPVKAFQIKNYVQVFVNCQIENPSFDSQTKETLTTKVSAFGSQC 437
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 12 KDEYVLQKSNIIEE---KSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDK 60
K E + Q IIEE + +LE+ + ESSA+ + N + ++ + EDK
Sbjct: 510 KTETIAQLEQIIEELHEELRSLEEESIKESSATQQNENQHKRSSRKLLYEDK 561
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 11 IKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITED--KNDSKTKKR 68
+ +E L K E+ E++K+ E + + + + + +++D K K KK+
Sbjct: 886 LAEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEEKQSGKKKKK 945
Query: 69 GQNKSRPKIFKDGKES 84
+ K + K ++ +S
Sbjct: 946 DRKKRKSKSKQESSDS 961
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 18 QKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSR 74
Q S++ S + K K D + ++ E + +DK D K KK +SR
Sbjct: 582 QGSSLSRRASKHESKHKRDSKHEARPESKHESHRESKSAEKDKKDKKDKKEDSKRSR 638
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 31 EKRKLDESSASFDDN--NLEFKKTKIEITEDKNDSKTKKRGQNKSR 74
+KRK ESS +D E K+ K E ++K + K KK + K +
Sbjct: 426 KKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKK 471
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 26.6 bits (56), Expect = 9.7
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 14 EYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKS 73
+Y+ +K E++ L+KRKL+E +++ KK +I +K S+ ++ +
Sbjct: 39 KYLQEKQQKDEQRE--LKKRKLEEERLKYEE-----KKLRISRLANKESSRNEELLTETT 91
Query: 74 RPKIFKDGKESKPCPTILDVESSEQLKI 101
P ++ P T L V +++L I
Sbjct: 92 TP---SPAVKASPASTKLSVSENDRLSI 116
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 24 EEKSYNLEKRKL-DESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKD-- 80
+EK N KR+L +E + F++++ E +K I+ ++ +++T ++ P+ F D
Sbjct: 36 KEKPQNSRKRQLAEEKKSLFENSDSENEKDLID-ADEFEEAETLSDLEHDEEPQTFADEF 94
Query: 81 -GKESKPC 87
E+K C
Sbjct: 95 IDDEAKEC 102
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,993
Number of Sequences: 5004
Number of extensions: 134644
Number of successful extensions: 458
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 40
length of query: 591
length of database: 2,362,478
effective HSP length: 77
effective length of query: 514
effective length of database: 1,977,170
effective search space: 1016265380
effective search space used: 1016265380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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