Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001335-TA|BGIBMGA001335-PA|IPR001269|Dihydrouridine
synthase, DuS
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0100 + 1034057-1034308,1034962-1035078,1035152-1035382,103... 450 e-126
06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245 87 4e-17
04_04_0603 + 26539104-26539148,26539941-26540046,26540465-265406... 85 2e-16
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716... 35 0.16
08_01_0793 - 7685702-7686955 33 0.48
07_01_0463 + 3502708-3503535 33 0.64
04_03_0187 + 12436934-12437108,12438020-12439044 33 0.85
02_03_0155 + 15805683-15805743,15805824-15806105,15808293-158089... 33 0.85
11_06_0710 - 26492093-26493460 32 1.5
08_02_1592 + 28078055-28078966 31 2.0
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 31 2.0
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 31 2.0
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 31 2.6
08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036 31 2.6
06_01_0293 - 2139421-2139600,2139716-2140471,2140830-2140935,214... 31 2.6
12_02_1166 + 26643045-26644078,26644238-26644322,26646800-26646937 31 3.4
09_04_0017 + 13821348-13823404,13823546-13823819,13823916-138242... 31 3.4
06_03_0602 - 22666227-22668740 31 3.4
05_02_0048 - 6066921-6067541 31 3.4
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491... 30 4.5
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 30 4.5
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 30 4.5
04_04_0625 + 26682725-26683066,26683555-26683659,26683790-266839... 30 4.5
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 30 6.0
03_05_0868 + 28385066-28385478,28386050-28386167,28386365-283867... 30 6.0
11_06_0652 - 25906001-25906237,25906345-25906830 29 7.9
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 7.9
>04_01_0100 +
1034057-1034308,1034962-1035078,1035152-1035382,
1038200-1038455,1038551-1038807,1038978-1039250,
1039617-1039898,1040045-1040165,1040351-1040520,
1040613-1040711
Length = 685
Score = 450 bits (1110), Expect = e-126
Identities = 209/394 (53%), Positives = 278/394 (70%), Gaps = 3/394 (0%)
Query: 199 LDTRNKSVDKNLNTSADVGEDIKIGAVTDEDLIKLLPRERKTIDWNNKLYLSPLTTVGNL 258
L+T +S D NL+ + + TD L RE+K ID+ KLYL+PLTTVGNL
Sbjct: 288 LNTNTESEDPNLSNGLEPSNNSS-SCRTDLITTPHL-REKKIIDFREKLYLAPLTTVGNL 345
Query: 259 PFRRICKEFGADVTCGEMALCESLLKGLKQEWALVKRHETEDLFGAQICGNNPYIITKVA 318
PFRR+CK GAD+TCGEMA+C +LL+G EWAL++RH +EDLFG QICG P + +
Sbjct: 346 PFRRLCKTLGADITCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTV 405
Query: 319 QLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCASKLLSIPFTVKMRT 378
+L+ +DFID+N+GCPID++ KG GS ++ + +++ V+ AS + P TVK+RT
Sbjct: 406 ELVDNECSVDFIDINMGCPIDIVVNKGAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRT 465
Query: 379 GVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKSSDWEYIETCAQ-AATPCPVYGN 437
++ + +IV + +WGAS ITVHGRSR+ RY+K +DW+YI CAQ A V GN
Sbjct: 466 AFFEGRNRADSIVSDIYDWGASAITVHGRSRQQRYSKLADWDYIYQCAQKAPDQLHVVGN 525
Query: 438 GDIFSYEDYVEMRKIAPTVKGVMIGRGALIKPWIFNEIKEQKIWDISSKDRFEILKKYSN 497
GD+FS+ D+ + + MI RGALIKPWIF E+KEQ+ WDI+S +RF ILK + +
Sbjct: 526 GDVFSFTDWNKHVSGCSKISTSMIARGALIKPWIFTEVKEQRHWDITSGERFNILKDFVS 585
Query: 498 YGLEHWGSDTQGVESTRRFLLEWLSFLYRYVPVGLLERPPQRINERPPTYFGRDDLETLM 557
+GLEHWGSD++GVE+TR FLLEWLS+ RY+PVGLL+ PQR+N RPP+Y GRDDLETLM
Sbjct: 586 FGLEHWGSDSKGVETTRYFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPSYCGRDDLETLM 645
Query: 558 ASSNCTDWIKISEMLLGPVPDGFQFLPKHKANSY 591
S + DWI+ISEMLLG VP+GF F PKHK+N+Y
Sbjct: 646 ISDSAADWIRISEMLLGKVPEGFTFTPKHKSNAY 679
Score = 57.2 bits (132), Expect = 3e-08
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 19/182 (10%)
Query: 49 FKKTKIEITEDKNDSKTKKRG----QNKSRPKIFKDGKESKPCPTILDVE--SSEQLKIC 102
F + + T K++ K G + KS+ ++ ++ K+ + + L +E S + C
Sbjct: 46 FLRPPLSATPPKDEGKANGGGAVVAEKKSKRQLKRERKQEQKSSSHLCIEVGKSGNVSSC 105
Query: 103 QY-NNCKFIHDSKQFLNSKPKDIGDQCHVYKVRGKCPRGIACRYGSDH--ITADGFNIVN 159
+Y ++C+F HD +L KP D+ C + CP G+ CR+ H I A N+
Sbjct: 106 KYGDSCRFSHDIDAYLAQKPADLEGTCPFTNLDQLCPYGLTCRFLGTHKDIHAASGNLSE 165
Query: 160 REKFDQWKDDTKNTLQPSLQTQLQKKKYNFDLAEKLVKHLDTRN--KSVDKNLNTSADVG 217
+ + N L +Q L K KY F A +K L + KS N V
Sbjct: 166 KHEI--------NALNKDIQKLLWKNKYKFPKASAQIKLLGLKEVIKSKPDAANDDKKVN 217
Query: 218 ED 219
D
Sbjct: 218 HD 219
>06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245
Length = 396
Score = 87.0 bits (206), Expect = 4e-17
Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 9/203 (4%)
Query: 246 KLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLKGLKQE-WALVKRHETEDLFGA 304
K+ ++P+ LPFR +C+ +GA M + K E LF
Sbjct: 63 KMVVAPMVDNSELPFRMLCRRYGATGAYTPMLHSRIFSENEKHRAMEFTTCKEDRPLF-V 121
Query: 305 QICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKKGGGSGMMHRLPALETSVRCA 364
Q C N+P I+ + A++++ D++D+N GCP + + G+ +M+ LP +++ V+
Sbjct: 122 QFCANDPDILLQAAKIVEPYC--DYVDINFGCPQRIARRGYYGAFLMNNLPLVKSLVQNL 179
Query: 365 SKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGRSREARYTKS--SDWEYI 422
S L +P + K+R ++ + T + GASL+ VHGR+R+ + K +DW+ I
Sbjct: 180 SANLHVPVSCKIR--IFPRLEDTLAYAKMLEEAGASLVAVHGRTRDEKDGKKFRADWDAI 237
Query: 423 ETCAQAATPCPVYGNGDIFSYED 445
+ + A PV NG+I +D
Sbjct: 238 K-AVKDALRIPVLANGNIRHLDD 259
>04_04_0603 +
26539104-26539148,26539941-26540046,26540465-26540603,
26540837-26540945,26541030-26541166,26541610-26541746,
26542184-26542290,26542483-26542610,26543418-26543469
Length = 319
Score = 84.6 bits (200), Expect = 2e-16
Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 22/248 (8%)
Query: 241 IDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLLK-------GLKQEWALV 293
+++ +KL L+P+ VG LPFR + E+GAD+T GE + LK L L
Sbjct: 1 MEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLE 60
Query: 294 KRHET---------EDLFGAQICGNNPYIITKVAQLLQENTELDFIDLNIGCPIDLIYKK 344
+ +T D Q+ ++ K AQL+ + ID+N+GCP
Sbjct: 61 RGTDTVVFRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAA--IDINMGCPKSFSLSG 118
Query: 345 GGGSGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITV 404
G G+ ++ + + + + L T K+R + ++ T + ++ G + V
Sbjct: 119 GMGAALLSKPELIHDILTTLRRNLDTTVTCKIR--LLNTRQDTVELARRVEKIGVPALAV 176
Query: 405 HGRSREARYTKSSDWEYIETCAQAATPCPVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRG 464
HGR + R + W+ I A + PV NGD+F YED+ + K A VM+ RG
Sbjct: 177 HGRKVKDRPRDPAKWDEIADVVSALS-IPVIANGDVFEYEDFKRI-KDATGAASVMVARG 234
Query: 465 ALIKPWIF 472
A+ IF
Sbjct: 235 AMWNASIF 242
>01_05_0420 +
21969797-21970939,21971307-21971369,21971488-21971616,
21972241-21972291,21972669-21972809,21972922-21973122,
21973201-21973419,21973582-21973700,21973772-21973862,
21975864-21975965,21976291-21976315,21976522-21976592
Length = 784
Score = 35.1 bits (77), Expect = 0.16
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 43 DDNNLEFKKT-KIEITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLKI 101
DD L+ T K +TE++ KTK + ++ + + K K P I + +K+
Sbjct: 379 DDKALKHGNTRKRTLTEERKAKKTKTKRIKRALQREAEGVKRLKLQPVI----KPKVVKV 434
Query: 102 CQY---------NNCKFIHDSKQFLNSKPKDIGDQCHVYKVRGKCPRGIACRYGSDH 149
C + N CKF HD+ SKP C Y RG C +G C Y DH
Sbjct: 435 CHFYLHGKCQQGNLCKFSHDTTPLTKSKP------CTHY-ARGSCLKGDDCPY--DH 482
>08_01_0793 - 7685702-7686955
Length = 417
Score = 33.5 bits (73), Expect = 0.48
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 14/88 (15%)
Query: 11 IKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKK-RG 69
+KD+ Q+ I+EE S N ++ K+ ES A +N E TE++ K K+ G
Sbjct: 268 LKDQPKWQR--ILEEDSKN-KRTKISESGAYTSSSNQE--------TEEETSRKEKRPEG 316
Query: 70 QNKSRPKIFKDGKESKPCPTILDVESSE 97
Q K++ K+ GK KP P+ L + S+
Sbjct: 317 QKKAKAKL--KGKGKKPAPSPLGDQPSQ 342
>07_01_0463 + 3502708-3503535
Length = 275
Score = 33.1 bits (72), Expect = 0.64
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 31 EKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESK 85
E +K D+ DD + E KK + E+ E K D KK K + ++GK+ +
Sbjct: 84 ENKKSDKKDDEHDDEDEEGKKKEKEMKEKKKDKSDKKEEGKKKKDGDEEEGKKKE 138
>04_03_0187 + 12436934-12437108,12438020-12439044
Length = 399
Score = 32.7 bits (71), Expect = 0.85
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 22 IIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKK-RGQNKSRPKIFKD 80
I+EE S N ++ K+ ES A +N E TE++ K K+ GQ K++ K+
Sbjct: 259 ILEEDSKN-KRTKISESGAYTSSSNQE--------TEEETSRKEKRPEGQKKAKAKL--K 307
Query: 81 GKESKPCPTILDVESSE 97
GK KP P+ L + S+
Sbjct: 308 GKGKKPAPSPLGDQPSQ 324
>02_03_0155 +
15805683-15805743,15805824-15806105,15808293-15808959,
15809440-15810490
Length = 686
Score = 32.7 bits (71), Expect = 0.85
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 22 IIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKR--GQNKSRPKIFK 79
++EE S N ++ K+ ES A +N + T+ E K + + KKR GQ K++ K+
Sbjct: 540 VLEEDSKN-KRTKISESGAYTSSSNQD---TEEENRRKKENRRKKKRPEGQKKAKAKLKG 595
Query: 80 DGKESKPCP 88
GK P P
Sbjct: 596 RGKNVAPSP 604
>11_06_0710 - 26492093-26493460
Length = 455
Score = 31.9 bits (69), Expect = 1.5
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 25 EKSYNLEKRKLDESSASFDDNNLEFK-KTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKE 83
EK +K+K S+ DD++ E K K K + ++D D K K + + K+ D K+
Sbjct: 134 EKKKKKKKKKSKSKSSDDDDDDAEKKSKKKSKNSDDDEDDKKKSKKKPKNPDDDEDDKKK 193
Query: 84 SKPCPTILDVESSEQLK 100
SK + D + +++ K
Sbjct: 194 SKKKSSDEDNDGAKKKK 210
Score = 30.3 bits (65), Expect = 4.5
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 24 EEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKE 83
E + +K+K +S +S DD++ KK+K + +D KK+ +K +PK D ++
Sbjct: 132 ESEKKKKKKKKKSKSKSSDDDDDDAEKKSKKKSKNSDDDEDDKKK--SKKKPKNPDDDED 189
Query: 84 SK 85
K
Sbjct: 190 DK 191
Score = 30.3 bits (65), Expect = 4.5
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 31 EKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESKP 86
+K+K + + DD+ + KK+K + +++ ND KK+ + KS+ K + + KP
Sbjct: 173 DKKKSKKKPKNPDDDEDDKKKSKKKSSDEDNDGAKKKK-KKKSKGKSSDEEDDEKP 227
>08_02_1592 + 28078055-28078966
Length = 303
Score = 31.5 bits (68), Expect = 2.0
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 22 IIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKK-RGQNKSRPKIFKD 80
I+EE S N ++ K+ ES A +N E TE++ K K+ GQ K++ K+
Sbjct: 163 ILEEDSKN-KRTKISESGAYTSSSNQE--------TEEETSRKEKRPEGQKKAKVKLKGK 213
Query: 81 GKESKPCP 88
GK+ P P
Sbjct: 214 GKKHAPSP 221
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 31.5 bits (68), Expect = 2.0
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 1 MKNSNAGVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDK 60
M +SN GV +KD V ++ ++ EK L+ +S+ D N + K+T E +
Sbjct: 90 MVSSNYGVQFVKD--VCIDEGVLADQKAIAEKVSLNLNSSKGDTNGIRIKETADEPAKSV 147
Query: 61 NDSKTK 66
ND K++
Sbjct: 148 NDLKSQ 153
>01_01_0827 +
6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 31.5 bits (68), Expect = 2.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 59 DKNDSKTKKRGQNKSRPKIFKDGKESKPCPTILDVESSEQLK 100
D N + +K + K RPK+ KD K SK + + S+E+++
Sbjct: 85 DLNKTPARKPKKKKHRPKVLKDDKPSKTPKSATPIPSTEKVE 126
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 31.1 bits (67), Expect = 2.6
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 32 KRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESKPCPTIL 91
+ +L+ S S+D N +E E K D K KKR ++K + + K K +
Sbjct: 1404 RSQLEVVSTSYDGNQAPDSMNGLETKEKKKDKKDKKRHRDKKDDPEYLEKKRLKKEKKRM 1463
Query: 92 DVESSEQLKICQYNNCKFIHDSKQFLNSKPKD 123
+ E ++ K + + S+Q +KP D
Sbjct: 1464 EKEKGKKQK-----EGEGVSSSEQKNTAKPSD 1490
>08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036
Length = 420
Score = 31.1 bits (67), Expect = 2.6
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 11 IKDEYVLQKSNIIEEKSYNLE-KRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRG 69
I +LQK+ +++EK++N E KRKL+E A+ ++L +KT ++ T+ K T
Sbjct: 49 ISTRILLQKNGLMKEKAFNKEMKRKLEELKAT--TSSLRTQKTDLK-TKIKGLEATATTL 105
Query: 70 QNKSR 74
+N+ +
Sbjct: 106 KNREK 110
>06_01_0293 -
2139421-2139600,2139716-2140471,2140830-2140935,
2140999-2141249,2141342-2141443,2141557-2141876,
2142350-2142546,2143668-2143786,2143876-2143997,
2144877-2145081
Length = 785
Score = 31.1 bits (67), Expect = 2.6
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 7 GVCAIKDEYVLQKSNIIEEKSYNL-EKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKT 65
G+ I+DE L+++ + EEK L K++ +E + ++ L + + E T+ N +
Sbjct: 360 GIQDIEDEIKLKETELTEEKVRRLIRKKEREEQEVARREDQLRNENAESEATKQSNGN-- 417
Query: 66 KKRGQNKSRPKIF 78
++ +NK+ +IF
Sbjct: 418 QEGDENKTGERIF 430
>12_02_1166 + 26643045-26644078,26644238-26644322,26646800-26646937
Length = 418
Score = 30.7 bits (66), Expect = 3.4
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 36 DESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPK-IFKDGKESKPCPTILDVE 94
+E++A+ +D+++E K +E+K + +KRG+ + R + K K+ T L
Sbjct: 127 EEAAAAEEDDDVEHKVAVRTTSEEKKKKRRRKRGRGRVRGHGVAKRPKKEDEEGTKLSAP 186
Query: 95 SSEQLK 100
+EQL+
Sbjct: 187 KAEQLE 192
>09_04_0017 +
13821348-13823404,13823546-13823819,13823916-13824238,
13824491-13824604,13825357-13825422,13825638-13825764
Length = 986
Score = 30.7 bits (66), Expect = 3.4
Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 5/146 (3%)
Query: 138 PRGIACRYGSDHITADGFNIVNREKFDQWKDDTKNTLQPSLQTQLQKKKYNFD-LAE--K 194
P + C G D D F ++ D ++ + K KY D LA+ +
Sbjct: 799 PDFVLC-IGDDRSDEDMFEVITTAAQDNCLSPDAEVFACTVGRKPSKAKYYLDDLADIVR 857
Query: 195 LVKHLDTRNKSVDKNLNTSADVGED-IKIGAVTDEDLIKLLPRERKTIDWNNKLYLSPLT 253
L++ L + + + T D + ++ + + D R+ + +
Sbjct: 858 LIQGLANVSDEMHSTMPTPVDAADTALRSISPSQSDQAPKFGRDESATTGAGATPFAGMV 917
Query: 254 TVGNLPFRRICKEFGADVTCGEMALC 279
V N F+R+CK D T G LC
Sbjct: 918 QVSNGCFKRMCKACSVDYTSGYPKLC 943
>06_03_0602 - 22666227-22668740
Length = 837
Score = 30.7 bits (66), Expect = 3.4
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 199 LDTRNKSVDKNLNTSADVGEDIKIGAVTDEDLIKLLPRERKTIDWNNKLYLSPLTTVGNL 258
+D N S+D + +S + +++ + D L ++P T+ + LYLS GN+
Sbjct: 163 IDISNNSIDGEIPSSMNKCSNLQAICLFDNKLQGVIPEGLGTLSNLSVLYLSNNNLSGNI 222
Query: 259 PF 260
PF
Sbjct: 223 PF 224
>05_02_0048 - 6066921-6067541
Length = 206
Score = 30.7 bits (66), Expect = 3.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 64 KTKKRGQNKSRPKIFKDGKESKP 86
K K+RG+ K RPK K G ++KP
Sbjct: 10 KRKRRGEGKPRPKATKGGSKAKP 32
>12_02_1167 +
26647293-26648356,26648493-26648577,26649129-26649191,
26649381-26649443,26649987-26650070,26650229-26650783
Length = 637
Score = 30.3 bits (65), Expect = 4.5
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 31 EKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNK--SRPKIFKDGKESKPCP 88
E K + ++A DD+N+E K +E+K + +KRG+ + + KE +
Sbjct: 132 ESPKEEAAAAEEDDDNVEHKVAVPTTSEEKKRRRRRKRGRGRVGGHGVAKRPKKEEEEEE 191
Query: 89 TILDVESSEQLK 100
T L +EQL+
Sbjct: 192 TKLSAPKAEQLE 203
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 30.3 bits (65), Expect = 4.5
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 7 GVCAIKDEYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTK 66
G+ D+++ IEE K+ +++ S + +K +K +++ DSK+
Sbjct: 120 GLFGKSDDFLTALDKFIEENGPEALKKLTNKAGKSSKQSGKSWKDSKS--SKESKDSKSS 177
Query: 67 KRGQNKSRPKIFKDGKESKP 86
K + PK KD K+ KP
Sbjct: 178 KESKE---PKPSKDSKQLKP 194
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 30.3 bits (65), Expect = 4.5
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 128 CHVYKVRGKCPRGIACRYGSDHITADG 154
CH + V+G+C RG CRY D T G
Sbjct: 320 CHDF-VKGRCSRGANCRYVHDDSTPHG 345
>04_04_0625 +
26682725-26683066,26683555-26683659,26683790-26683951,
26684042-26684102,26684798-26684922,26685532-26685603
Length = 288
Score = 30.3 bits (65), Expect = 4.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 38 SSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGKESK 85
S DD+ E T + E++ D++ R + K + K+ GK S+
Sbjct: 80 SDGGEDDDEEESSSTSDQDGEEEEDAEASSRSRKKGKKKVLNSGKSSQ 127
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 29.9 bits (64), Expect = 6.0
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 167 KDDTKNTLQPSLQTQLQKKKYNFDLAEKLVKHLDTRNKSVDKNLNTSADVGEDIKI--GA 224
KD+ N L+ L L N + +L LDT +D + E ++ GA
Sbjct: 384 KDNLLNQLEEKLSAALSDTSKNKIIIAELNNELDTNRTMLDNEAEAHKKLSEILQSTEGA 443
Query: 225 VTD-EDLIKLLPRERKTIDWNNKLYLSPLTTVGNLPFRRICKEFGADVTCGEMALCESLL 283
+TD D + L E + +N+ ++ +T + + I K+ V ++A E++
Sbjct: 444 LTDYRDKVFNLSEELNRVKISNQQLITQITKLTD--ESNIAKQ----VLTNKIAEAEAVS 497
Query: 284 KGLKQEWALVK 294
K L E A V+
Sbjct: 498 KVLSDELASVR 508
>03_05_0868 +
28385066-28385478,28386050-28386167,28386365-28386726,
28389308-28389406,28389485-28389890
Length = 465
Score = 29.9 bits (64), Expect = 6.0
Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 3/117 (2%)
Query: 71 NKSRPKIFKDGKESKPCPTILDVESSEQLKICQYNNC--KFIHDSKQFLNSKPKDIGDQC 128
N+ + K G+E ++L + + C N K ++ +K+ D GD C
Sbjct: 120 NRLKNACLKFGRERFDLLSVLPKQDIRAIVECGCPNIFRKPVNSAKRLREFLQIDEGDAC 179
Query: 129 HVYKVRGKCPRGIACRYGSDHI-TADGFNIVNREKFDQWKDDTKNTLQPSLQTQLQK 184
K+RG C + D T D I+ D +N++ +Q +K
Sbjct: 180 SACKLRGSCDKAYVIPNAEDEARTVDVMRILLNYAIDPTSLSGENSVNGGVQESARK 236
>11_06_0652 - 25906001-25906237,25906345-25906830
Length = 240
Score = 29.5 bits (63), Expect = 7.9
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 32 KRKLDESSASFDDNNLEFKKTKIEITEDKNDSKTKKRGQNKSRPKIFKDGK 82
+ K+D +A+ + +E K K+ + D ++R N S+ +IF GK
Sbjct: 124 EEKIDRQAAN--GSRIEKKLDKLAVAAGSRDQPNQRRANNSSQREIFNTGK 172
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.5 bits (63), Expect = 7.9
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 16 VLQKSNIIEEKSYNLEKRKLDESSASFDDNNL-----EFKKTKIEITEDKNDSKTKKRGQ 70
V + +IE+K+Y + ++ + S + NL E K+ +I + +DK++ K+ Q
Sbjct: 326 VFEDHGMIEDKTYIVPQKYFEPEKFSIEFKNLNGEVEEDKQKEILVLQDKSNMMQDKKDQ 385
Query: 71 NKSRPKIFKDGKESKPCP----TILDVESSEQLKI 101
N G+E L+VE SE LK+
Sbjct: 386 NNLEQTNSNGGEEELQVKDKDLVALEVEESE-LKV 419
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,236,061
Number of Sequences: 37544
Number of extensions: 811740
Number of successful extensions: 2074
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2030
Number of HSP's gapped (non-prelim): 53
length of query: 591
length of database: 14,793,348
effective HSP length: 86
effective length of query: 505
effective length of database: 11,564,564
effective search space: 5840104820
effective search space used: 5840104820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -