GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001335-TA|BGIBMGA001335-PA|IPR001269|Dihydrouridine
synthase, DuS
         (591 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   1.8  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              24   3.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   3.1  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 348 SGMMHRLPALETSVRCASKLLSIPFTVKMRTGVYQDKKITHTIVPKMSNWGASLITVHGR 407
           SGM+     L+ ++ C  +L   PF V+    +++    TH ++  +  W    I +   
Sbjct: 127 SGMVRLNTRLQATLNCGLRLEKFPFDVQECPLIFE--SWTHNVLDMVLYWDQEPIILADE 184

Query: 408 SREARYTKSSDW 419
                Y     W
Sbjct: 185 LHLTEYKLVEKW 196


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 14 EYVLQKSNIIEEKSYNLEKRKLDESSASFDDNNLE 48
          E +++K N+++E     EK   D   A  DDN  +
Sbjct: 64 ECMMKKFNVVDENGNFNEKNTRDIVQAVLDDNETD 98


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 433 PVYGNGDIFSYEDYVEMRKIAPTVKGVMIGRGALIKP---WIFNEIKEQKIWDISSKDRF 489
           P++G   IFS   Y ++ KI    K +    GAL K    W F  I        S +D  
Sbjct: 60  PIFGTRWIFSCIGYYKLNKIHDAYKDLNQRYGALCKEEALWNFPMISV-----FSRQDIE 114

Query: 490 EILKKYSNYGL 500
            I+++ S Y L
Sbjct: 115 TIIRRNSRYPL 125


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,623
Number of Sequences: 429
Number of extensions: 9467
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 3
length of query: 591
length of database: 140,377
effective HSP length: 61
effective length of query: 530
effective length of database: 114,208
effective search space: 60530240
effective search space used: 60530240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)