Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001334-TA|BGIBMGA001334-PA|IPR001478|PDZ/DHR/GLGF,
IPR008145|Guanylate kinase/L-type calcium channel region,
IPR008144|Guanylate kinase
         (567 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.61 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   1.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   1.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   1.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   1.9  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   4.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   5.7  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   9.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   9.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 26.2 bits (55), Expect = 0.61
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 144  IEFSKESPEGNGDMPIETVKVVGLRKVP-GQPLGLTVTTDEHGQLIV 189
            I    E+  G+ + P ETV ++   +VP G P  + V T++   L+V
Sbjct: 969  IRIVAENEIGSSE-PSETVTIITAEEVPGGPPTSIRVETNDQHSLVV 1014


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 262 PNWWQASHVERPEIVGLIPSPELEERRKAYVPPEADF 298
           P + Q  H+    +    P P  E  + +Y+PP  DF
Sbjct: 14  PTYQQPQHISGVVVDPKFP-PSEEYNQNSYIPPGGDF 49


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 262 PNWWQASHVERPEIVGLIPSPELEERRKAYVPPEADF 298
           P + Q  H+    +    P P  E  + +Y+PP  DF
Sbjct: 14  PTYQQPQHISGVVVDPKFP-PSEEYNQNSYIPPGGDF 49


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 262 PNWWQASHVERPEIVGLIPSPELEERRKAYVPPEADF 298
           P + Q  H+    +    P P  E  + +Y+PP  DF
Sbjct: 14  PTYQQPQHISGVVVDPKFP-PSEEYNQNSYIPPGGDF 49


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 262 PNWWQASHVERPEIVGLIPSPELEERRKAYVPPEADF 298
           P + Q  H+    +    P P  E  + +Y+PP  DF
Sbjct: 14  PTYQQPQHISGVVVDPKFP-PSEEYNQNSYIPPGGDF 49


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 437 KMCILDCAPQSLKLLHNSSEFLPYVVMITAPGIEQLKNLTHASNRNLTFDRQSSI 491
           KM  L C+ + L ++ N     P +++I    +  L  +    N N  +D++  I
Sbjct: 193 KMEGLVCSIKELNMIFNEFFGWPIIMIILYSSLMVLNYIDEVFNNNFGYDKKQYI 247


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 285 EERRKAYVPPEADFVHKISICG 306
           E++R+ Y+PPE + V  +   G
Sbjct: 110 EKKREFYIPPEVENVEDLFTSG 131


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 352 GTRGVGRRTLKNR-LIQDYPDRFGAVVPHTSRPPRPMEEN 390
           G R  G+ + K + L+ ++PD   +    T  PP  +E N
Sbjct: 199 GFRENGKSSAKRKQLVSEHPDSPNSKKSATPSPPPQLEVN 238


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 293 PPEADFVHKISICGARISRKKKKFVYESRSSVQLE 327
           P  ADF       G   ++ K + VY     V+LE
Sbjct: 138 PEPADFADAPDAIGKTRTKDKYRVVYTDHQRVELE 172


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,254
Number of Sequences: 317
Number of extensions: 4887
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 10
length of query: 567
length of database: 114,650
effective HSP length: 60
effective length of query: 507
effective length of database: 95,630
effective search space: 48484410
effective search space used: 48484410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)