Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001334-TA|BGIBMGA001334-PA|IPR001478|PDZ/DHR/GLGF,
IPR008145|Guanylate kinase/L-type calcium channel region,
IPR008144|Guanylate kinase
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 83 8e-17
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 32 0.25
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 29 1.3
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 29 2.3
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 4.0
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 28 4.0
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 28 4.0
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 28 4.0
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 27 7.0
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 7.0
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 7.0
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 27 9.3
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 27 9.3
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 83.4 bits (197), Expect = 8e-17
Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Query: 348 LALVGTRGVGRRTLKNRLIQDYPDRFGAVVPHTSRPPRPMEENGQSYWFVSREEMERDAH 407
+ + G GVG+ TL RL++D+ D+ G V HT+R PR E++G Y FV++EE ++
Sbjct: 21 VVVFGPSGVGKSTLLKRLLKDHGDKLGFSVSHTTRTPRAGEKDGIDYHFVTKEEFQKLVA 80
Query: 408 AGRFLEYGEHNGNLYGTHLDSIRAVIKEGKMCILDCAPQSLKLLHNSSEFLPYVVMITAP 467
+F+E+ +GN+YGT + +I+ + K ILD Q + L +S V + P
Sbjct: 81 EEKFVEWAVFSGNMYGTSIMAIQELEAVNKKAILDIDLQGV-LQVKASPIDAQYVFLAPP 139
Query: 468 GIEQLK 473
IEQL+
Sbjct: 140 SIEQLE 145
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 31.9 bits (69), Expect = 0.25
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 217 HIESEEQL-KEAVAKPNDRVTLKVGPNLKEKSSQLTNKLTISDRKDPNWWQASHVERPEI 275
++ES+ + K+ ++ P+ +VT+ +K+ +L++ S KD + ++S VE
Sbjct: 321 YLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSD----SALKDALYLKSSIVEETND 376
Query: 276 VGLIPSPELEERRKAYVPPEADFVHKISICGARISRKKKKFVYESRS 322
G +PE +R VPP+ V +++ + + KK ++ S S
Sbjct: 377 -GYSQAPEQLLQRYVVVPPKLRLVSLVALLRSHVRSYKKIIIFLSCS 422
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 29.5 bits (63), Expect = 1.3
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 476 THASNRNLTFDRQSSIRYSSRRARTLESLASLYEEEDL---KQTLEE-SARIQRQYEKYI 531
++A + N ++QS+ Y SR+ R ++ + E DL K LE A+++++Y+
Sbjct: 77 SNADDANKEPEKQSTSDYVSRKNRHMQLIKKNILEHDLQARKANLESYRAKLEKEYKTLA 136
Query: 532 DFVITNNNSDTTFSKI-LDALHALS--TDHQWV 561
+ I SD T + +D L ++ +D +W+
Sbjct: 137 ENKIQQRLSDGTKQLVTIDGLQYITGVSDTKWL 169
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 509 EEEDLKQTLEESARIQRQYEKYIDFVITNNNSDTTFSKILD 549
E+ D+++ E+++I Y FV+ ++ D + S+ILD
Sbjct: 194 EDLDMEEAAIENSKISSSYAYKPSFVLASSQLDASISRILD 234
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 469 IEQLKNLTHASNRNLTFDR------QSSIRYSSRRARTLESLASLYEEEDL 513
IE+ K H + RNL +R ++S+ S R LESL L+E ++L
Sbjct: 600 IERKKETVHNTYRNLMSNRTKLEEMKASLSSSRSRGNVLESLQRLHESDNL 650
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 27.9 bits (59), Expect = 4.0
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 19/174 (10%)
Query: 170 VPGQPLGLTVTTDEHGQLIVARILAGSAAAKQALVSVGDVLLEVDGVHIESEEQLKEAVA 229
+PG+P+ T I I A ++ + V V +E V++ES E+V
Sbjct: 591 LPGKPIEFTPPISVEPTSIKT-IAAEESSEPTSSVDVAPTPVEDVNVNLESISNTNESVV 649
Query: 230 KPNDRVTLKVGPNLKEKSSQLTNKLTISDRKDPNWWQASHVERPEIVGLIPSPELEERRK 289
+D + K G E+SS + + + + + + +R ++ +R +
Sbjct: 650 DLSDPLVSKNGFEDVERSSVADLEEDVLETRSSIFETSDIDDRLTVI---------DRSQ 700
Query: 290 AYVPPEADFVHKISICGARISRKKKKFVYESRSSVQLEGAELALYEEVARTPPF 343
+ VP E++F SI GA ++R+ SV L+ EL + +EV F
Sbjct: 701 SVVPSESEF----SIAGANLTRRN-----AVDFSVSLDTYELYVSDEVENVDDF 745
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 327 EGAELALYEEVARTPPFLRRVLALVGTRGVGRRTLKNRLIQDYPDRFGAVVPHTSRPPRP 386
+G +LA Y + F + L + ++ + +++ Y + G +V S PR
Sbjct: 181 KGIQLAAYAPLVHGEKFGNKQLLAIASK---YNKSEAQIMIRYCLQRGFIVLPKSSTPRR 237
Query: 387 MEENGQSYWF-VSREEMER 404
++ENG + F +S+E+ME+
Sbjct: 238 IKENGDVFDFEISKEDMEK 256
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 211 LEVDGVHIESEEQLKEAVAKPNDRVTLKVGPNLKEKSSQLTNKLTISDRK 260
LE+ G H++ E+ A NDR + P +E S +LTI +K
Sbjct: 1045 LEILGQHLDYVEKRNSASLSLNDRPGPPMEPASRETSPDSEGRLTIRKKK 1094
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 494 SSRRARTLESLASLYEEEDLKQTLEESARIQRQYEKYIDFVITNNNSDTTFS 545
S + R +ES + +E+ K+ E+S I+ Q E++I+ +NN ++ S
Sbjct: 476 SYKYVREIESHRIHFSKEEEKREREKSKGIRGQEEEFIENADEDNNDSSSSS 527
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 344 LRRVLALVGTRGVGRRTLKNRLIQDYPDRFGAVVPH 379
L+ +ALVG G G+ TL +++ G+VV H
Sbjct: 619 LKSRVALVGPNGAGKTTLIKLILEKVQPSTGSVVRH 654
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 62 CADSEEDLLVKPVSLGNVNIIRSLSEY--RGNNIRTIEQAELAIIVSRAH 109
C D+E+++ V +S + + E RGN+ RT+ E + SR+H
Sbjct: 208 CEDAEQNVSVPGLSYFTPTNLEEVMEIIIRGNSNRTMSPTEANAVSSRSH 257
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 495 SRRARTLESL-ASLYEEEDL------KQTLEESARIQRQYEKYIDFVITNNNSDTTFSKI 547
SR LE L +SL+EE + K+T+ R+ + ++ +D +++ +++
Sbjct: 105 SRVENELEDLTSSLFEEANRMVANARKETVASEKRVNQLKKQLVDAETLLSSTQHQLTEL 164
Query: 548 LDALHALSTDHQ 559
D +H++S H+
Sbjct: 165 KDVMHSMSDSHE 176
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 408 AGRFLEYGEHNGNLYGTHLDSIRAVIKEGKMCILDCAPQSLKLLHNSSEFLP 459
A FL+ GE G + THL ++ ++ E ++ + + +LL + E +P
Sbjct: 246 ASEFLKLGERPGGFFRTHLITLYELLSEVRINEEEDRVKLKQLLSSKLEVIP 297
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,194
Number of Sequences: 5004
Number of extensions: 107570
Number of successful extensions: 359
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 13
length of query: 567
length of database: 2,362,478
effective HSP length: 76
effective length of query: 491
effective length of database: 1,982,174
effective search space: 973247434
effective search space used: 973247434
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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