GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001334-TA|BGIBMGA001334-PA|IPR001478|PDZ/DHR/GLGF,
IPR008145|Guanylate kinase/L-type calcium channel region,
IPR008144|Guanylate kinase
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    83   8e-17
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    32   0.25 
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    29   1.3  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    29   2.3  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    28   4.0  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    28   4.0  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    28   4.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    28   4.0  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    27   7.0  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   7.0  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    27   7.0  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    27   9.3  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    27   9.3  

>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 83.4 bits (197), Expect = 8e-17
 Identities = 45/126 (35%), Positives = 72/126 (57%), Gaps = 1/126 (0%)

Query: 348 LALVGTRGVGRRTLKNRLIQDYPDRFGAVVPHTSRPPRPMEENGQSYWFVSREEMERDAH 407
           + + G  GVG+ TL  RL++D+ D+ G  V HT+R PR  E++G  Y FV++EE ++   
Sbjct: 21  VVVFGPSGVGKSTLLKRLLKDHGDKLGFSVSHTTRTPRAGEKDGIDYHFVTKEEFQKLVA 80

Query: 408 AGRFLEYGEHNGNLYGTHLDSIRAVIKEGKMCILDCAPQSLKLLHNSSEFLPYVVMITAP 467
             +F+E+   +GN+YGT + +I+ +    K  ILD   Q + L   +S      V +  P
Sbjct: 81  EEKFVEWAVFSGNMYGTSIMAIQELEAVNKKAILDIDLQGV-LQVKASPIDAQYVFLAPP 139

Query: 468 GIEQLK 473
            IEQL+
Sbjct: 140 SIEQLE 145


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 217 HIESEEQL-KEAVAKPNDRVTLKVGPNLKEKSSQLTNKLTISDRKDPNWWQASHVERPEI 275
           ++ES+  + K+ ++ P+ +VT+     +K+   +L++    S  KD  + ++S VE    
Sbjct: 321 YLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSD----SALKDALYLKSSIVEETND 376

Query: 276 VGLIPSPELEERRKAYVPPEADFVHKISICGARISRKKKKFVYESRS 322
            G   +PE   +R   VPP+   V  +++  + +   KK  ++ S S
Sbjct: 377 -GYSQAPEQLLQRYVVVPPKLRLVSLVALLRSHVRSYKKIIIFLSCS 422


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 476 THASNRNLTFDRQSSIRYSSRRARTLESLASLYEEEDL---KQTLEE-SARIQRQYEKYI 531
           ++A + N   ++QS+  Y SR+ R ++ +     E DL   K  LE   A+++++Y+   
Sbjct: 77  SNADDANKEPEKQSTSDYVSRKNRHMQLIKKNILEHDLQARKANLESYRAKLEKEYKTLA 136

Query: 532 DFVITNNNSDTTFSKI-LDALHALS--TDHQWV 561
           +  I    SD T   + +D L  ++  +D +W+
Sbjct: 137 ENKIQQRLSDGTKQLVTIDGLQYITGVSDTKWL 169


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 509 EEEDLKQTLEESARIQRQYEKYIDFVITNNNSDTTFSKILD 549
           E+ D+++   E+++I   Y     FV+ ++  D + S+ILD
Sbjct: 194 EDLDMEEAAIENSKISSSYAYKPSFVLASSQLDASISRILD 234


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 469 IEQLKNLTHASNRNLTFDR------QSSIRYSSRRARTLESLASLYEEEDL 513
           IE+ K   H + RNL  +R      ++S+  S  R   LESL  L+E ++L
Sbjct: 600 IERKKETVHNTYRNLMSNRTKLEEMKASLSSSRSRGNVLESLQRLHESDNL 650


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 19/174 (10%)

Query: 170 VPGQPLGLTVTTDEHGQLIVARILAGSAAAKQALVSVGDVLLEVDGVHIESEEQLKEAVA 229
           +PG+P+  T         I   I A  ++   + V V    +E   V++ES     E+V 
Sbjct: 591 LPGKPIEFTPPISVEPTSIKT-IAAEESSEPTSSVDVAPTPVEDVNVNLESISNTNESVV 649

Query: 230 KPNDRVTLKVGPNLKEKSSQLTNKLTISDRKDPNWWQASHVERPEIVGLIPSPELEERRK 289
             +D +  K G    E+SS    +  + + +   +  +   +R  ++         +R +
Sbjct: 650 DLSDPLVSKNGFEDVERSSVADLEEDVLETRSSIFETSDIDDRLTVI---------DRSQ 700

Query: 290 AYVPPEADFVHKISICGARISRKKKKFVYESRSSVQLEGAELALYEEVARTPPF 343
           + VP E++F    SI GA ++R+          SV L+  EL + +EV     F
Sbjct: 701 SVVPSESEF----SIAGANLTRRN-----AVDFSVSLDTYELYVSDEVENVDDF 745


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 327 EGAELALYEEVARTPPFLRRVLALVGTRGVGRRTLKNRLIQDYPDRFGAVVPHTSRPPRP 386
           +G +LA Y  +     F  + L  + ++       + +++  Y  + G +V   S  PR 
Sbjct: 181 KGIQLAAYAPLVHGEKFGNKQLLAIASK---YNKSEAQIMIRYCLQRGFIVLPKSSTPRR 237

Query: 387 MEENGQSYWF-VSREEMER 404
           ++ENG  + F +S+E+ME+
Sbjct: 238 IKENGDVFDFEISKEDMEK 256


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 211  LEVDGVHIESEEQLKEAVAKPNDRVTLKVGPNLKEKSSQLTNKLTISDRK 260
            LE+ G H++  E+   A    NDR    + P  +E S     +LTI  +K
Sbjct: 1045 LEILGQHLDYVEKRNSASLSLNDRPGPPMEPASRETSPDSEGRLTIRKKK 1094


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 494 SSRRARTLESLASLYEEEDLKQTLEESARIQRQYEKYIDFVITNNNSDTTFS 545
           S +  R +ES    + +E+ K+  E+S  I+ Q E++I+    +NN  ++ S
Sbjct: 476 SYKYVREIESHRIHFSKEEEKREREKSKGIRGQEEEFIENADEDNNDSSSSS 527


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 344 LRRVLALVGTRGVGRRTLKNRLIQDYPDRFGAVVPH 379
           L+  +ALVG  G G+ TL   +++      G+VV H
Sbjct: 619 LKSRVALVGPNGAGKTTLIKLILEKVQPSTGSVVRH 654


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 62  CADSEEDLLVKPVSLGNVNIIRSLSEY--RGNNIRTIEQAELAIIVSRAH 109
           C D+E+++ V  +S      +  + E   RGN+ RT+   E   + SR+H
Sbjct: 208 CEDAEQNVSVPGLSYFTPTNLEEVMEIIIRGNSNRTMSPTEANAVSSRSH 257


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 495 SRRARTLESL-ASLYEEEDL------KQTLEESARIQRQYEKYIDFVITNNNSDTTFSKI 547
           SR    LE L +SL+EE +       K+T+    R+ +  ++ +D     +++    +++
Sbjct: 105 SRVENELEDLTSSLFEEANRMVANARKETVASEKRVNQLKKQLVDAETLLSSTQHQLTEL 164

Query: 548 LDALHALSTDHQ 559
            D +H++S  H+
Sbjct: 165 KDVMHSMSDSHE 176


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/52 (26%), Positives = 27/52 (51%)

Query: 408 AGRFLEYGEHNGNLYGTHLDSIRAVIKEGKMCILDCAPQSLKLLHNSSEFLP 459
           A  FL+ GE  G  + THL ++  ++ E ++   +   +  +LL +  E +P
Sbjct: 246 ASEFLKLGERPGGFFRTHLITLYELLSEVRINEEEDRVKLKQLLSSKLEVIP 297


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,194
Number of Sequences: 5004
Number of extensions: 107570
Number of successful extensions: 359
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 13
length of query: 567
length of database: 2,362,478
effective HSP length: 76
effective length of query: 491
effective length of database: 1,982,174
effective search space: 973247434
effective search space used: 973247434
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)