Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001333-TA|BGIBMGA001333-PA|IPR002042|Uricase
         (337 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.59 
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    25   0.78 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          25   0.78 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.4  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    24   1.4  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    23   3.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.5  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    22   5.5  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 184 GLSGLRVLKTTQSAFVDFVQDE--YTTLTDAVERIFS-TIVEAEWIYDNMRTADFDN 237
           G  G R  +     +++   DE  Y  +   V+ +   TI+ A+W+ +     DFDN
Sbjct: 140 GAIGQRSCQVVIQCYLEIKIDEHLYPVVALVVKNLIKPTILGADWLNEQRAVIDFDN 196


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 2   PWTSTNRIYAKPSSTSANETPSP 24
           P TS N     P STS+N + SP
Sbjct: 151 PKTSPNEASMSPQSTSSNNSASP 173


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 2   PWTSTNRIYAKPSSTSANETPSP 24
           P TS N     P STS+N + SP
Sbjct: 171 PKTSPNEASMSPQSTSSNNSASP 193


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 56  KLLHVHRDEGHHVIREFEVFTELKLASE 83
           +L+H  + E H +I E E+F+ L++A+E
Sbjct: 313 ELIHQIQTEDHDIIDEIEMFS-LQIANE 339


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 56  KLLHVHRDEGHHVIREFEVFTELKLASE 83
           +L+H  + E H +I E E+F+ L++A+E
Sbjct: 344 ELIHQIQTEDHDIIDEIEMFS-LQIANE 370


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 119 FGAVVVNHFLYMYKQVLEAKCRVIE 143
           +G V+V H L++   VL   C ++E
Sbjct: 115 YGFVIVAHLLFLVIFVLNIWCWIVE 139


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 2   PWTSTNRIYAKPSSTSANETPSPSLASPRVALTAAEDSGGRFELCD 47
           P+T  +  Y+ P S+ + +  SP+    R  L+ +  +G   + CD
Sbjct: 127 PYTVISNGYSSPMSSGSYDPYSPNGKIGREDLSPSSLNGYSADSCD 172


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 260 SPSVQHTLYQAEKTVLEKVSEIT 282
           +P VQ  LY+    V++ +  IT
Sbjct: 15  NPKVQEKLYEEVAAVIDNIENIT 37


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,705
Number of Sequences: 317
Number of extensions: 3455
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 8
length of query: 337
length of database: 114,650
effective HSP length: 57
effective length of query: 280
effective length of database: 96,581
effective search space: 27042680
effective search space used: 27042680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)