Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001333-TA|BGIBMGA001333-PA|IPR002042|Uricase
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual      153   5e-38
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    33   0.044
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    29   1.2  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    28   2.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.6  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    26   8.8  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   8.8  

>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score =  153 bits (370), Expect = 5e-38
 Identities = 95/292 (32%), Positives = 149/292 (51%), Gaps = 16/292 (5%)

Query: 50  YGKSSVKLLH--VHRDEGHHVIREFEVFTELKLASETAYILGDNKEVVATDSQKNTVYLL 107
           YGK+ V+ +   +      H + E +V + L    E +Y   DN  VV TD+QKNT+Y+ 
Sbjct: 12  YGKTLVRFMKKDICPKTKTHTVYEMDVQSLLTGELEESYTKADNSIVVPTDTQKNTIYVF 71

Query: 108 AKKYGVKTPEEFGAVVVNHFLYMYKQVLEAKCRVIEYPWERLQA-GTPHSHAFVFSPIAT 166
           AK   V  PE F A +  HF+  YK +  A   +   PW R++  G PHSH+F+ +P  T
Sbjct: 72  AKNNDVSVPEVFAAKLAKHFVDKYKHIHGAALDITITPWTRMEVQGKPHSHSFIRNPGET 131

Query: 167 RWSEVSQTRHEAVVVKSGLSGLRVLKTTQSAFVDFVQDEYTTLTDAVERIFSTIVEAEWI 226
           R + V  +  +   V S L  + VLK+T S F +F + E+TTL +  +RIFST ++  + 
Sbjct: 132 RKTHVVFSEGKGFDVVSSLKDVLVLKSTGSGFTNFHKCEFTTLPEVTDRIFSTSIDCNYT 191

Query: 227 YDNMRT------ADFDNAWLTVKDAILDKFAGPPDTGVYSPSVQHTLYQAEKTVLEKVSE 280
           + +  T       DF++ +  VK+  L+ FA        S SVQ T+Y+   T++     
Sbjct: 192 FKHFDTFEELAGFDFNSIYEKVKEITLETFALDD-----SESVQATMYKMADTIINTYPA 246

Query: 281 ITWIKMTMPNKHYLNIDMSKFPVNVTKGDPRHFIYHPIDQPAGLIYAQLRRR 332
           I  +   +PNKHY  I+++  P N+        +Y P   P+G I   + R+
Sbjct: 247 INEVYYALPNKHYFEINLA--PFNIDNLGSNCSLYQPQAYPSGYITCTVARK 296


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 33.5 bits (73), Expect = 0.044
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 176 HEAVVVKSGLSGLRVLKTTQSAFVDFVQDEYTTL--TDAVERI 216
           HE  + K  LS LR+++T   AF  FV DE  +L  T+A  RI
Sbjct: 778 HEEPMTKLDLSTLRLIRTDSEAFDTFVSDELNSLCATNAYNRI 820


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 232 TADFDNAWLTVKDAILDKFAGPP---DTGVYSPSVQHTLY 268
           T D    W T   ++   FAGPP    T   SP+  +TLY
Sbjct: 198 TTDIQPLWETSSYSVFTTFAGPPIATSTVFASPTYMYTLY 237


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
          Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 12 KPSSTSANETPSPSLASPRVALTAAEDSGGRFEL 45
          KPS  SANET +P LAS    L   ++   R EL
Sbjct: 43 KPSVNSANETKNPKLASLEFQLENLKNDLKRKEL 76


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 68   VIREFEVFTELKLASETAY--ILGDNKEVVATDSQKNTVYLLAKKYGVKTPE 117
            V+ E + F +L+ A  + Y  I  +   V+  +   NT   LAKK  VK P+
Sbjct: 3042 VVIERKRFLQLQFAFWSLYNEIYSEKMNVIPLEQLMNTGSYLAKKIKVKNPD 3093


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 181 VKSGLSGLRVLKTTQSAFVDFVQDEYTTLTDAVERIFSTIVEAEWIYDN 229
           +K   SGL ++    S+   F+    TT+ +A E +  + V A  + DN
Sbjct: 248 LKKKASGLEIMSLIDSSEEPFLVGTRTTVAEATESMARSGVSAVLVMDN 296


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 1/104 (0%)

Query: 48  HGYGKSSVKLLHVHRDEGHHVIREFEVFTELKLASETAYILGDNKEVVATDSQKNTVYLL 107
           HGYGK  ++  +      H      +  ++L L S  AY       +V     + T+  L
Sbjct: 331 HGYGKLLIQFSYELTKREHKHGSPEKPLSDLGLISYRAYWAEQIINLVLGMRTETTIDEL 390

Query: 108 AKKYGVKTPEEFGAVVVNHFLYMYK-QVLEAKCRVIEYPWERLQ 150
           A K  + T +    +   + L  YK Q +      IE  +ERL+
Sbjct: 391 ANKTSMTTNDVLHTLQALNMLKYYKGQFIICISDGIEQQYERLK 434


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,352
Number of Sequences: 5004
Number of extensions: 66318
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 7
length of query: 337
length of database: 2,362,478
effective HSP length: 73
effective length of query: 264
effective length of database: 1,997,186
effective search space: 527257104
effective search space used: 527257104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)