Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001333-TA|BGIBMGA001333-PA|IPR002042|Uricase
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1448 - 37434159-37434242,37434875-37434968,37435077-374352... 188 4e-48
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687... 33 0.33
01_01_0185 - 1570942-1571178,1571525-1571656,1571737-1571816,157... 30 2.3
08_02_0654 - 19732679-19732837,19733234-19733479,19734470-197346... 30 3.0
12_01_0188 - 1392077-1392652 29 7.0
11_06_0284 + 21909758-21913645 29 7.0
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 29 7.0
01_06_1412 - 37140654-37141088,37141549-37142214 28 9.3
01_06_1120 - 34645676-34645768,34645880-34645966,34646443-346465... 28 9.3
>01_06_1448 -
37434159-37434242,37434875-37434968,37435077-37435250,
37435536-37435627,37435947-37436056,37437274-37437349,
37437445-37437537,37437617-37437817
Length = 307
Score = 188 bits (459), Expect = 4e-48
Identities = 120/302 (39%), Positives = 162/302 (53%), Gaps = 19/302 (6%)
Query: 50 YGKSSVKLLHVHRDE---GHHVIREFEVFTELKLASETAYILGDNKEVVATDSQKNTVYL 106
+GKS V++ V R G HVI E+ V + +Y DN +VATDS KNTVY+
Sbjct: 11 HGKSRVRVSRVWRRPAAAGGHVIVEWNVAVSVVSDCLPSYTSDDNSAIVATDSIKNTVYV 70
Query: 107 LAKKYG-VKTPEEFGAVVVNHFLYMYKQVLEAKCRVIEYPWERLQA-GTPHSHAFVFSPI 164
AK+ + + EEF ++ HF +Y QV EA + E PWER+ G PHSH F +
Sbjct: 71 KAKECTEIVSMEEFAVILGRHFTSLYPQVSEATVTIAERPWERVVVDGKPHSHGFKLG-V 129
Query: 165 ATRWSEVSQTRHEAVVVKSGLSGLRVLKTTQSAFVDFVQDEYTTLTDAVERIFSTIVEAE 224
+EV + +++ SG+ G +LKTTQS F FV+D YT L D ERI +T V A
Sbjct: 130 EKHVTEVIVKKSGNLLINSGIQGYSLLKTTQSGFEKFVRDRYTLLPDTRERIVATEVTAW 189
Query: 225 WIYDNMRTAD-------FDNAWLTVKDAILDKFAGPPDTGVYSPSVQHTLYQAEKTVLEK 277
W Y + F + VK + D F GPPD GVYSPSVQ+TLY K VL +
Sbjct: 190 WRYPFEHVSQIPSKSFCFTQRYQDVKKVLADTFFGPPDVGVYSPSVQNTLYLMAKEVLNR 249
Query: 278 VSEITWIKMTMPNKHYL--NIDMSKFPVNVTKGDPRHFIYHPIDQPAGLIYAQLRRRPKS 335
+I +++ MPN H++ N+ + P V D +Y P D+P G I A + RPKS
Sbjct: 250 FPDIASVQLRMPNLHFIPVNLGNKENPGLVKFADD---VYLPTDEPHGTIEATV-SRPKS 305
Query: 336 KL 337
KL
Sbjct: 306 KL 307
>09_06_0252 +
21867179-21867283,21868362-21868526,21868621-21868730,
21868802-21868904,21868998-21869110,21869204-21869357,
21869476-21870633
Length = 635
Score = 33.1 bits (72), Expect = 0.33
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 239 WLTVKDAILDKFAGPPDTGVYSPSVQHTLYQAEKTVLEKVSEITWIKMTMPNKHY 293
WL A++ A P G Y P V T + ++ KV+++T +K +P +Y
Sbjct: 4 WLAAAAALVALLAAAPAAGFYLPGVAPTDFGKGDSLPVKVNKLTSVKTQLPYAYY 58
>01_01_0185 -
1570942-1571178,1571525-1571656,1571737-1571816,
1571919-1572048,1572136-1572268,1572376-1572497,
1572612-1572749,1572898-1572918,1573493-1573678,
1574576-1574713,1575068-1575532
Length = 593
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 146 WERLQAGTPHSHAFVFSPIATRWSEVSQTRHEAVVVKSGLSGLR 189
WERL + V S I T+WSE+S + A +K L LR
Sbjct: 471 WERLHPENVEASVVVLSTIVTKWSELSH-KLSAESLKVTLKNLR 513
>08_02_0654 -
19732679-19732837,19733234-19733479,19734470-19734667,
19735085-19735201,19735289-19735459,19735632-19735893,
19736205-19736353
Length = 433
Score = 29.9 bits (64), Expect = 3.0
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 236 DNAWLTVKDAILDKFAGPPDTGVYS---PSVQHTLYQAEKTVLEKVSEI 281
D WL V A+L P G+Y P VQ LYQ EK VLE++ ++
Sbjct: 211 DAFWLLV--ALLKGAVHAPMEGLYQAGLPLVQQYLYQFEKLVLEQMPQL 257
>12_01_0188 - 1392077-1392652
Length = 191
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 32 ALTAAEDSGGRFELCDHGYGKSSVKLL 58
A++A E + E C+ G+GKS+VK L
Sbjct: 142 AMSALEKAANMVEECEKGFGKSNVKSL 168
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 48 HGYGKSSVKLLHV-HRDEGHHVIREFEVFTELKLAS 82
HG+ + K H+ H HH+ R F +F +L++ S
Sbjct: 900 HGFITTIAKKQHIMHTRLSHHLARHFSIFNDLQVRS 935
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 178 AVVVKSGLSGLRVLKTTQSAFVDFVQDEYTTLTDAVERIFSTIVEAEWIYD 228
AV+++ + + ++A V +Q + LT+A+ +I I++ EW++D
Sbjct: 3350 AVMLEEYCNAHETARAARTA-VSLMQRQSNDLTEALRKIVLEIIQVEWLHD 3399
>01_06_1412 - 37140654-37141088,37141549-37142214
Length = 366
Score = 28.3 bits (60), Expect = 9.3
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 11 AKPSSTSANETPSPSLAS-PRVALTAAEDSGGRFELCDHGYGKSSVKLLHVHRDEGHHVI 69
A SS S++ + S S+AS + + ED GG + DH G + + LL + +EG+
Sbjct: 22 ASSSSWSSSFSSSSSMASRDQETVVPGEDGGGEIQE-DHKSGMTCLPLLSM-LEEGNSKR 79
Query: 70 REFEVFTELKLASETAYILGDNKEV 94
E V E+ ++ A ++ E+
Sbjct: 80 HEHPVKEEIMSSAHAAGVVEPGVEL 104
>01_06_1120 -
34645676-34645768,34645880-34645966,34646443-34646508,
34647126-34647215,34647317-34647397,34647598-34647675,
34647788-34647878,34647969-34648110,34648479-34648590
Length = 279
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 267 LYQAEKTVLEKVSEITWIKMTMPNKHYLNIDMSKFPVNVTKGDPRHF-IYHPIDQP 321
++Q + +LE ++IT + + N + +I + + N+ K P F IY+ ++QP
Sbjct: 166 MFQVARAILENPNDITKVHLVYANVTHDDILLKEELDNMAKTYPDRFKIYYVLNQP 221
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,005,275
Number of Sequences: 37544
Number of extensions: 408393
Number of successful extensions: 1109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 9
length of query: 337
length of database: 14,793,348
effective HSP length: 82
effective length of query: 255
effective length of database: 11,714,740
effective search space: 2987258700
effective search space used: 2987258700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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