Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001333-TA|BGIBMGA001333-PA|IPR002042|Uricase
(337 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47919| Best HMM Match : Uricase (HMM E-Value=8.2e-35) 124 1e-28
SB_39646| Best HMM Match : Uricase (HMM E-Value=0.00041) 84 2e-16
SB_36671| Best HMM Match : IBB (HMM E-Value=2.8) 30 2.3
SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64) 30 2.3
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_36254| Best HMM Match : Filament (HMM E-Value=0.21) 29 4.1
SB_36779| Best HMM Match : PseudoU_synth_2 (HMM E-Value=6.3e-14) 29 4.1
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 4.1
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17) 29 5.4
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 29 5.4
SB_13355| Best HMM Match : HlyD (HMM E-Value=0.29) 29 7.1
SB_30856| Best HMM Match : TSP_1 (HMM E-Value=5.9e-09) 28 9.4
>SB_47919| Best HMM Match : Uricase (HMM E-Value=8.2e-35)
Length = 537
Score = 124 bits (299), Expect = 1e-28
Identities = 60/145 (41%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 149 LQAGTPHSHAFVFSPIATRWSEVSQTRHEAVVVKSGLSGLRVLKTTQSAFVDFVQDEYTT 208
LQ G H+HAF+ +P R+ EVS R + V GL ++VLKTTQS F F++D+YT+
Sbjct: 374 LQGGIGHAHAFIMTPDVQRFCEVSHVRGDEPKVFGGLRDMKVLKTTQSGFTGFLKDQYTS 433
Query: 209 LTDAVERIFSTIVEAEWIYDNMRTADFDNAWLTVKDAILDKFAGPPDTGVYSPSVQHTLY 268
L + +R F T+V ++ +D++ DF+ VKD I++ F+GP TG YS SVQ+T+Y
Sbjct: 434 LPEVGDRCFCTVVYCKYNFDSLAGVDFNAVHKLVKDVIIEDFSGPAKTGEYSASVQNTMY 493
Query: 269 QAEKTVLEKVSEI-TWIKMTMPNKH 292
AE ++LEK+ ++ K+ + N H
Sbjct: 494 IAENSLLEKIPQVRNEKKLEVDNHH 518
Score = 85.0 bits (201), Expect = 8e-17
Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 49 GYGKSSVKLLHVHRDEG-HHVIREFEVFTELKLASETAYILGDNKEVVATDSQKNTVYLL 107
GYGK+ V+LL + R +H I+E EV ELKL S+ Y+ GDN +V+ TD+QKNT+Y L
Sbjct: 142 GYGKTGVRLLKIKRRSTLYHEIKELEVAVELKLRSKKDYLNGDNSDVIPTDTQKNTIYAL 201
Query: 108 AKKYGVKTPEEFGAVVVNHFLYMYK 132
AKK+ + + EEFG V +FL +K
Sbjct: 202 AKKHPLDSIEEFGLHVCKYFLDTHK 226
>SB_39646| Best HMM Match : Uricase (HMM E-Value=0.00041)
Length = 304
Score = 83.8 bits (198), Expect = 2e-16
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 117 EEFGAVVVNHFLYMYKQVLEA---KCRVIEYPWERLQAGTPHSHAFVFSPIATRWSEVSQ 173
EEFG V +FL +K + + I + LQ G H+HAF+ +P R+ EVS
Sbjct: 5 EEFGLHVCKYFLDTHKHAFSPIIHRHQAITFALY-LQVGIGHAHAFIMTPDVQRFCEVSH 63
Query: 174 TRHEAVVVKSGLSGLRVLKTTQSAFVDFVQDEYTTLTDAVERIFSTIVEAEWIYDNMRTA 233
R + V GL ++VLKTTQS F F++D+YT+L + +R F T+V ++ +D++
Sbjct: 64 VRGDEPKVFGGLRDMKVLKTTQSGFTGFLKDQYTSLPEVGDRCFCTVVYCKYNFDSLAGV 123
Query: 234 DFD 236
DF+
Sbjct: 124 DFN 126
>SB_36671| Best HMM Match : IBB (HMM E-Value=2.8)
Length = 1080
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 74 VFTELKLASETAYILGDNKEVVATDSQKNTVYLLAKKYGVKTPEEFGAVVV 124
V+T LK A + + G V+ D +Y+ AK+ ++ PEEF V+
Sbjct: 571 VYTVLKHAQKVIAVAGQEDTVITFDL---AIYIKAKQIQLRCPEEFANTVI 618
>SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64)
Length = 1294
Score = 30.3 bits (65), Expect = 2.3
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 55 VKLLHVHRDEGHHVIREFEVFTELKLASETAYILGDNKEVVATDSQKNTVYLLAKKY--G 112
+ ++H H D H VI +F LK + D+ E+V T N ++L +K+
Sbjct: 503 IVIMHYHADHHHLVIHRVIIF--LKSIRAEYEVTADDMEIVDTSDCTN-CFILFRKFIKE 559
Query: 113 VKTPEEFGAVVVNHFLYMYKQVLEAKC--RVIEYPWE 147
+ FG V++ + +K+ L + C V+ P+E
Sbjct: 560 ILHVSVFGKVLIK--MKQFKEDLLSSCLSLVLSLPYE 594
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 200 DFVQDEYTTLTDAVERIFSTIVEAEWIYDNMRTADFDNAWLTVKDAIL 247
D +++ YT L D ++++ +++ +R AD AW+ K+AI+
Sbjct: 2269 DELEERYTHLRDVARDRHRRLLDSSRLFNFLREADELGAWVEEKEAIV 2316
>SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)
Length = 589
Score = 29.5 bits (63), Expect = 4.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 2 PWTSTNRIYAKPSSTSANETPSPSLASP 29
P++ T + PS S NE PSP SP
Sbjct: 512 PYSPTRNVSRSPSGNSVNEQPSPRSNSP 539
>SB_36779| Best HMM Match : PseudoU_synth_2 (HMM E-Value=6.3e-14)
Length = 223
Score = 29.5 bits (63), Expect = 4.1
Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 199 VDFVQDEYTTLTDAVERIFSTIVEAEWIYDNMRTADFDNAWLTVKDAILDKFAGPPDTGV 258
+ Q + R+ T+++A+++ DN+ ++ + +L++FA +
Sbjct: 26 IQSAQSKMAIAARTARRVLKTVIDAQYLADNVIFSNRGPGVVLSVAELLEEFAAIKNY-Q 84
Query: 259 YSPSVQHTLYQAEKTVLEKVSEITWIKMTMPNKHYLNIDM 298
P + H L KT +K++E+ + M K YL + +
Sbjct: 85 NKPELAHRL-DKNKTAAQKIAEM--FQSRMVKKRYLAVSV 121
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 29.5 bits (63), Expect = 4.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 2 PWTSTNRIYAKPSSTSANETPSPSLASP 29
P++ T + PS S NE PSP SP
Sbjct: 3040 PYSPTRNVSRSPSGNSVNEQPSPRSNSP 3067
>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
Length = 905
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 162 SPIATRWSEVSQTRHEAVVVKSGLSGLRVLKTTQSAFVDFVQDEYTTLTDAVERIFSTIV 221
SP+ATR S+ R E V S +K + + D V+ T + DAV+ + +
Sbjct: 293 SPLATRDESTSRPREEDAVKHSATVIEDAVKHSSTVIEDAVKHSATVIEDAVKHSATVVG 352
Query: 222 EA 223
+A
Sbjct: 353 DA 354
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 29.1 bits (62), Expect = 5.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 23 SPSLASPRVALTAAEDSGGRFELCDHGYGKSSVKLLHVH 61
+P + + L A + G +FE C+ Y K +L+++H
Sbjct: 1103 APIAEAESILLVAEVEPGAKFETCEPEYLKEDYQLVYIH 1141
>SB_13355| Best HMM Match : HlyD (HMM E-Value=0.29)
Length = 327
Score = 28.7 bits (61), Expect = 7.1
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 252 GPPDTGVYSPSVQHTLYQAEKTVLEKVSEITWIKMTMPNKHYLNI 296
G P +Y+P+ + T Q E +++E+++ + K+ + N+ LN+
Sbjct: 95 GQPLVRLYNPNTELTYMQQETSIIEQINNLNKAKLDLRNQE-LNL 138
>SB_30856| Best HMM Match : TSP_1 (HMM E-Value=5.9e-09)
Length = 197
Score = 28.3 bits (60), Expect = 9.4
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 3 WTSTNRIYAKPSSTSANET---PSPSLASPRVALTAAEDSGGRFELCDHGYGKSSV 55
W+ R+ K SST N T P P+ + T+ E + CD G+ SS+
Sbjct: 70 WSKCTRVCGKGSSTR-NRTCTNPEPAWGGKKCVGTSVETKSCGTDECDGGFDSSSI 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.132 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,580,447
Number of Sequences: 59808
Number of extensions: 476107
Number of successful extensions: 1281
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1268
Number of HSP's gapped (non-prelim): 15
length of query: 337
length of database: 16,821,457
effective HSP length: 83
effective length of query: 254
effective length of database: 11,857,393
effective search space: 3011777822
effective search space used: 3011777822
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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