GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001333-TA|BGIBMGA001333-PA|IPR002042|Uricase
         (337 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51940-1|CAA36203.1|  352|Drosophila melanogaster urate oxidase ...   263   3e-70
AE014134-1338|AAF52555.1|  352|Drosophila melanogaster CG7171-PA...   263   3e-70
BT024422-1|ABC86484.1|  368|Drosophila melanogaster IP02834p pro...   257   2e-68
Z29361-1|CAA82545.1|  644|Drosophila melanogaster BTD protein.         32   1.3  
AE014298-1363|AAF46518.1|  644|Drosophila melanogaster CG12653-P...    32   1.3  
X14397-1|CAA32570.1|   52|Drosophila melanogaster protein ( Dros...    31   2.3  
AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA...    31   3.0  
AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB...    31   3.0  
BT023792-1|AAZ41801.1|  475|Drosophila melanogaster GH11086p pro...    29   6.9  
AE014296-2276|AAF49819.1|  475|Drosophila melanogaster CG10713-P...    29   6.9  

>X51940-1|CAA36203.1|  352|Drosophila melanogaster urate oxidase
           protein.
          Length = 352

 Score =  263 bits (644), Expect = 3e-70
 Identities = 139/318 (43%), Positives = 198/318 (62%), Gaps = 29/318 (9%)

Query: 42  RFELCDHGYGKSSVKLLHVHRDEGHHVIREFEVFTELKLASETAYILGDNKEVVATDSQK 101
           ++E+ DHGYGK +VK+LHV R+   H I+EFEV T LKL S+  Y  G+N ++VATDSQK
Sbjct: 31  QYEITDHGYGKDAVKVLHVSRNGPVHAIQEFEVGTHLKLYSKKDYYQGNNSDIVATDSQK 90

Query: 102 NTVYLLAKKYGVKTPEEFGAVVVNHFL---------------YMYKQVLEAKCRVI---- 142
           NTVYLLAKK+G+++PE+F  ++  HF+               Y +++V + + R      
Sbjct: 91  NTVYLLAKKHGIESPEKFALLLAKHFINKYSHVEEAHVHVEAYPWQRVCQEETRTNVNGK 150

Query: 143 -------EYPWERLQAGTPHSHAFVFSPIATRWSEVSQTRHEAV-VVKSGLSGLRVLKTT 194
                     +  +   + H+HAF+F+P A  + +V   R +    V +G+ GLRVLKTT
Sbjct: 151 CENGVQGNCDFSSIDNRSLHNHAFIFTPTALHYCDVVIRRTDPKQTVITGIKGLRVLKTT 210

Query: 195 QSAFVDFVQDEYTTLTDAVERIFSTIVEAEWIYDNMRTADFDNAWLTVKDAILDKFAGPP 254
           QS+FV+FV DE+ +L D  +RIFST+V+  W Y +    DF  AW TVK+ I+  FAG P
Sbjct: 211 QSSFVNFVNDEFRSLPDQYDRIFSTVVDCSWEYSDTENLDFLRAWQTVKNIIIRNFAGDP 270

Query: 255 DTGVYSPSVQHTLYQAEKTVLEKVSEITWIKMTMPNKHYLNIDMSKFPVNVTKGDPRHFI 314
             GV SPSVQHTLY +E+ VL+ + +++ I MTMPNKHY N D   F   +  GD  + +
Sbjct: 271 QVGVSSPSVQHTLYLSERQVLDVLPQVSVISMTMPNKHYFNFDTKPFQ-KIAPGD-NNEV 328

Query: 315 YHPIDQPAGLIYAQLRRR 332
           + P+D+P G IYAQL R+
Sbjct: 329 FIPVDKPHGTIYAQLARK 346


>AE014134-1338|AAF52555.1|  352|Drosophila melanogaster CG7171-PA
           protein.
          Length = 352

 Score =  263 bits (644), Expect = 3e-70
 Identities = 139/318 (43%), Positives = 198/318 (62%), Gaps = 29/318 (9%)

Query: 42  RFELCDHGYGKSSVKLLHVHRDEGHHVIREFEVFTELKLASETAYILGDNKEVVATDSQK 101
           ++E+ DHGYGK +VK+LHV R+   H I+EFEV T LKL S+  Y  G+N ++VATDSQK
Sbjct: 31  QYEITDHGYGKDAVKVLHVSRNGPVHAIQEFEVGTHLKLYSKKDYYQGNNSDIVATDSQK 90

Query: 102 NTVYLLAKKYGVKTPEEFGAVVVNHFL---------------YMYKQVLEAKCRVI---- 142
           NTVYLLAKK+G+++PE+F  ++  HF+               Y +++V + + R      
Sbjct: 91  NTVYLLAKKHGIESPEKFALLLARHFINKYSHVEEAHVHVEAYPWQRVCQEETRTNVNGK 150

Query: 143 -------EYPWERLQAGTPHSHAFVFSPIATRWSEVSQTRHEAV-VVKSGLSGLRVLKTT 194
                     +  +   + H+HAF+F+P A  + +V   R +    V +G+ GLRVLKTT
Sbjct: 151 CENGVQGNCDFSSIDNRSLHNHAFIFTPTALHYCDVVIRRTDPKQTVITGIKGLRVLKTT 210

Query: 195 QSAFVDFVQDEYTTLTDAVERIFSTIVEAEWIYDNMRTADFDNAWLTVKDAILDKFAGPP 254
           QS+FV+FV DE+ +L D  +RIFST+V+  W Y +    DF  AW TVK+ I+  FAG P
Sbjct: 211 QSSFVNFVNDEFRSLPDQYDRIFSTVVDCSWEYSDTENLDFLRAWQTVKNIIIRNFAGDP 270

Query: 255 DTGVYSPSVQHTLYQAEKTVLEKVSEITWIKMTMPNKHYLNIDMSKFPVNVTKGDPRHFI 314
             GV SPSVQHTLY +E+ VL+ + +++ I MTMPNKHY N D   F   +  GD  + +
Sbjct: 271 QVGVSSPSVQHTLYLSERQVLDVLPQVSVISMTMPNKHYFNFDTKPFQ-KIAPGD-NNEV 328

Query: 315 YHPIDQPAGLIYAQLRRR 332
           + P+D+P G IYAQL R+
Sbjct: 329 FIPVDKPHGTIYAQLARK 346


>BT024422-1|ABC86484.1|  368|Drosophila melanogaster IP02834p
           protein.
          Length = 368

 Score =  257 bits (629), Expect = 2e-68
 Identities = 136/313 (43%), Positives = 194/313 (61%), Gaps = 29/313 (9%)

Query: 42  RFELCDHGYGKSSVKLLHVHRDEGHHVIREFEVFTELKLASETAYILGDNKEVVATDSQK 101
           ++E+ DHGYGK +VK+LHV R+   H I+EFEV T LKL S+  Y  G+N ++VATDSQK
Sbjct: 32  QYEITDHGYGKDAVKVLHVSRNGPVHAIQEFEVGTHLKLYSKKDYYQGNNSDIVATDSQK 91

Query: 102 NTVYLLAKKYGVKTPEEFGAVVVNHFL---------------YMYKQVLEAKCRVI---- 142
           NTVYLLAKK+G+++PE+F  ++  HF+               Y +++V + + R      
Sbjct: 92  NTVYLLAKKHGIESPEKFALLLARHFINKYSHVEEAHVHVEAYPWQRVCQEETRTNVNGK 151

Query: 143 -------EYPWERLQAGTPHSHAFVFSPIATRWSEVSQTRHEAV-VVKSGLSGLRVLKTT 194
                     +  +   + H+HAF+F+P A  + +V   R +    V +G+ GLRVLKTT
Sbjct: 152 CENGVQGNCDFSSIDNRSLHNHAFIFTPTALHYCDVVIRRTDPKQTVITGIKGLRVLKTT 211

Query: 195 QSAFVDFVQDEYTTLTDAVERIFSTIVEAEWIYDNMRTADFDNAWLTVKDAILDKFAGPP 254
           QS+FV+FV DE+ +L D  +RIFST+V+  W Y +    DF  AW TVK+ I+  FAG P
Sbjct: 212 QSSFVNFVNDEFRSLPDQYDRIFSTVVDCSWEYSDTENLDFLRAWQTVKNIIIRNFAGDP 271

Query: 255 DTGVYSPSVQHTLYQAEKTVLEKVSEITWIKMTMPNKHYLNIDMSKFPVNVTKGDPRHFI 314
             GV SPSVQHTLY +E+ VL+ + +++ I MTMPNKHY N D   F   +  GD  + +
Sbjct: 272 QVGVSSPSVQHTLYLSERQVLDVLPQVSVISMTMPNKHYFNFDTKPFQ-KIAPGD-NNEV 329

Query: 315 YHPIDQPAGLIYA 327
           + P+D+P G IYA
Sbjct: 330 FIPVDKPHGTIYA 342


>Z29361-1|CAA82545.1|  644|Drosophila melanogaster BTD protein.
          Length = 644

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 13/35 (37%), Positives = 24/35 (68%)

Query: 2   PWTSTNRIYAKPSSTSANETPSPSLASPRVALTAA 36
           PW+S++    +P++TSA+ + S S +SP  A+ +A
Sbjct: 513 PWSSSSSRAIQPATTSASSSSSSSASSPAAAVVSA 547


>AE014298-1363|AAF46518.1|  644|Drosophila melanogaster CG12653-PA
           protein.
          Length = 644

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 13/35 (37%), Positives = 24/35 (68%)

Query: 2   PWTSTNRIYAKPSSTSANETPSPSLASPRVALTAA 36
           PW+S++    +P++TSA+ + S S +SP  A+ +A
Sbjct: 513 PWSSSSSRAIQPATTSASSSSSSSASSPAAAVVSA 547


>X14397-1|CAA32570.1|   52|Drosophila melanogaster protein (
           Drosophila put. sodiumchannel gene part 4 (AA
           1267-1319). ).
          Length = 52

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 87  ILGDNKEVVATDSQKNTVYLLAKKYGVKTPEEFGAVVVNHFLYMY 131
           I G   E+  T+SQK+  Y   KK G K P++     +NHFL M+
Sbjct: 1   IEGGVLEMFLTESQKH-YYTAMKKLGRKKPQKVIKRPINHFLAMF 44


>AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA,
            isoform A protein.
          Length = 1618

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 93   EVVATDSQKNTVYLLAKKYGVKTPEEFGAVVVNHFLYMY 131
            E+  T+SQK+  Y   KK G K P++     +NHFL M+
Sbjct: 1173 EMFLTESQKH-YYTAMKKLGRKKPQKVIKRPINHFLAMF 1210


>AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB,
            isoform B protein.
          Length = 2327

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 93   EVVATDSQKNTVYLLAKKYGVKTPEEFGAVVVNHFLYMY 131
            E+  T+SQK+  Y   KK G K P++     +NHFL M+
Sbjct: 1882 EMFLTESQKH-YYTAMKKLGRKKPQKVIKRPINHFLAMF 1919


>BT023792-1|AAZ41801.1|  475|Drosophila melanogaster GH11086p
           protein.
          Length = 475

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 12/33 (36%), Positives = 22/33 (66%)

Query: 4   TSTNRIYAKPSSTSANETPSPSLASPRVALTAA 36
           +S+N  ++ P++ +   T +PS+ASP  A+ AA
Sbjct: 261 SSSNMRHSTPAAAATTTTETPSVASPAAAVAAA 293


>AE014296-2276|AAF49819.1|  475|Drosophila melanogaster CG10713-PA
           protein.
          Length = 475

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 12/33 (36%), Positives = 22/33 (66%)

Query: 4   TSTNRIYAKPSSTSANETPSPSLASPRVALTAA 36
           +S+N  ++ P++ +   T +PS+ASP  A+ AA
Sbjct: 261 SSSNMRHSTPAAAATTTTETPSVASPAAAVAAA 293


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.317    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,863,905
Number of Sequences: 52641
Number of extensions: 703928
Number of successful extensions: 1940
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1924
Number of HSP's gapped (non-prelim): 13
length of query: 337
length of database: 24,830,863
effective HSP length: 85
effective length of query: 252
effective length of database: 20,356,378
effective search space: 5129807256
effective search space used: 5129807256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)