GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001333-TA|BGIBMGA001333-PA|IPR002042|Uricase
         (337 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.     29   6.2  
U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AL032644-6|CAA21671.1|  574|Caenorhabditis elegans Hypothetical ...    28   8.2  
AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41D4B.18 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 4   TSTNRIYAKPSSTSANETPSPS 25
           T+T+  YA PSST++  TP+P+
Sbjct: 228 TTTSTAYAAPSSTASTSTPAPT 249


>Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical
           protein C10C5.6b protein.
          Length = 1782

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 12  KPSSTSANETPSPSLASPRVALTAAEDSGGRFE 44
           KPSS  AN  P   L   + AL     +GGRF+
Sbjct: 603 KPSSMFANHPPPAQLTMDKRALQINTQTGGRFQ 635


>Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical
           protein C10C5.6a protein.
          Length = 1776

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 12  KPSSTSANETPSPSLASPRVALTAAEDSGGRFE 44
           KPSS  AN  P   L   + AL     +GGRF+
Sbjct: 603 KPSSMFANHPPPAQLTMDKRALQINTQTGGRFQ 635


>Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical
           protein C10C5.6b protein.
          Length = 1782

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 12  KPSSTSANETPSPSLASPRVALTAAEDSGGRFE 44
           KPSS  AN  P   L   + AL     +GGRF+
Sbjct: 603 KPSSMFANHPPPAQLTMDKRALQINTQTGGRFQ 635


>Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical
           protein C10C5.6a protein.
          Length = 1776

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 12  KPSSTSANETPSPSLASPRVALTAAEDSGGRFE 44
           KPSS  AN  P   L   + AL     +GGRF+
Sbjct: 603 KPSSMFANHPPPAQLTMDKRALQINTQTGGRFQ 635


>AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.
          Length = 1800

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 12  KPSSTSANETPSPSLASPRVALTAAEDSGGRFE 44
           KPSS  AN  P   L   + AL     +GGRF+
Sbjct: 627 KPSSMFANHPPPAQLTMDKRALQINTQTGGRFQ 659


>U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical
           protein F41C3.2 protein.
          Length = 499

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 164 IATRWSEVSQTRHEAVVVKSGLSGLRVLKTTQSAFVDFVQDEYT 207
           I   WS V Q  +  V+V +GL+G+ + ++ Q      +   YT
Sbjct: 370 IPQTWSSVGQLCYSLVIVANGLNGVGITRSAQLVCKQHMSFVYT 413


>AL032644-6|CAA21671.1|  574|Caenorhabditis elegans Hypothetical
           protein Y51H1A.6 protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 2   PWTSTNRIYAKPSSTSANETPSPSLASPRVALTAAEDSGGRFELCDHGYGKSSVKLLHVH 61
           PW         P STS   +PSP L  P       +D+  RF+  + G G   +  L  H
Sbjct: 223 PWQEETAANGGPQSTSLIRSPSPMLKEP-----LFDDNEIRFKCAECGDGFPVMDRLCDH 277

Query: 62  RDEGHHV---IREFEVFTE-----LKLASETAYILGDNKEVVATDSQKNTVYLLAKKYGV 113
             + H     +RE + F +       L  E A +  D ++ +   S+  +  L    Y  
Sbjct: 278 MIKQHDCQTNVREVQFFADRDFENFLLKVEKATLGRDPEDAIRKKSRAGSSQLFVCNYMN 337

Query: 114 KTPEEFGAVV 123
           K  ++   +V
Sbjct: 338 KGRQKMAELV 347


>AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.7 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 38  DSGGRFELCDHGYGKSSVKLLHVHRDEGHHVIREFEVFTELKLASETAYILGDNKEVVAT 97
           D   R  L +H  GK+ + ++        H+I+EF    EL LA     +  +N  + A 
Sbjct: 109 DLSHRLHLVEHRVGKAQIVVMEKVEKATGHIIQEFHE-RELDLARNVEILQEENSNLTAK 167

Query: 98  DSQ 100
           + +
Sbjct: 168 NEK 170


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,564,220
Number of Sequences: 27539
Number of extensions: 360707
Number of successful extensions: 1051
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 9
length of query: 337
length of database: 12,573,161
effective HSP length: 82
effective length of query: 255
effective length of database: 10,314,963
effective search space: 2630315565
effective search space used: 2630315565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)