GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001333-TA|BGIBMGA001333-PA|IPR002042|Uricase
         (337 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26230.1 68415.m03149 uricase / urate oxidase / nodulin 35, p...   190   9e-49
At1g54250.1 68414.m06185 DNA-directed RNA polymerase I, II, and ...    31   1.1  
At1g01310.1 68414.m00047 allergen V5/Tpx-1-related family protei...    30   2.5  
At3g59600.1 68416.m06650 DNA-directed RNA polymerase I, II, and ...    29   3.4  
At2g37320.1 68415.m04577 pentatricopeptide (PPR) repeat-containi...    29   4.4  
At4g18230.1 68417.m02708 expressed protein predicted gene M02B7....    28   7.8  

>At2g26230.1 68415.m03149 uricase / urate oxidase / nodulin 35,
           putative identical to uricase SP:O04420 from
           [Arabidopsis thaliana]
          Length = 309

 Score =  190 bits (464), Expect = 9e-49
 Identities = 113/296 (38%), Positives = 163/296 (55%), Gaps = 13/296 (4%)

Query: 47  DHGYGKSSVKLLHV--HRDEGHHVIREFEVFTELKLASETAYILGDNKEVVATDSQKNTV 104
           D  +GK+ V++  V  H  +G H   E+ V   L     ++Y L DN ++VATD+ KNTV
Sbjct: 11  DQRHGKARVRVGRVWRHAHDGSHHFVEWNVSISLLSHCLSSYRLDDNSDIVATDTIKNTV 70

Query: 105 YLLAKKYGVK-TPEEFGAVVVNHFLYMYKQVLEAKCRVIEYPWERLQA-GTPHSHAFVFS 162
           Y+ AK+ G + + EEF  ++  HF   Y QV  A   +IE PWER+   G PH H F   
Sbjct: 71  YVKAKECGDRLSVEEFAILIGKHFCSFYPQVFTAIVNIIEKPWERVSIDGKPHLHGFKLG 130

Query: 163 PIATRWSEVSQTRHEAVVVKSGLSGLRVLKTTQSAFVDFVQDEYTTLTDAVERIFSTIVE 222
                 +E    +  A+ + SG+ GL +LKTTQS F  FV+D+YT L +  ER+ +T V 
Sbjct: 131 S-ENHTTEARVEKSGALNLTSGIGGLALLKTTQSGFERFVRDKYTILPETRERMLATEVN 189

Query: 223 AEWIYDNMRTAD-------FDNAWLTVKDAILDKFAGPPDTGVYSPSVQHTLYQAEKTVL 275
           A W Y     A        F   ++ VK  ++D F GPP+TGVYSPSVQ TLY     VL
Sbjct: 190 ASWRYSYESVASIPTKGLYFSEKFMDVKKVLMDTFFGPPETGVYSPSVQRTLYLMGSAVL 249

Query: 276 EKVSEITWIKMTMPNKHYLNIDMSKFPVNVTKGDPRHFIYHPIDQPAGLIYAQLRR 331
           ++ ++++ I + MPN H+L +++S    N +    +  +Y P D+P G I A L R
Sbjct: 250 KRFADVSSIHLKMPNIHFLPVNLST-KENPSMVKFKDDVYLPTDEPHGSIEATLSR 304


>At1g54250.1 68414.m06185 DNA-directed RNA polymerase I, II, and
           III, putative similar to SP|P52434 DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide (EC
           2.7.7.6) (RPB17) (RPB8) {Homo sapiens}; contains Pfam
           profile PF03870: RNA polymerase Rpb8
          Length = 146

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 252 GPPDTGVYSPSVQHTLYQAEKTVLE-KVSEITWIKMTMPNKHYLNIDMSKFPVNVTKGDP 310
           G PDTG ++P  + TL    + ++  K+ +I+      P K  L +      + + KGDP
Sbjct: 70  GTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTP-KAELYVSFGGL-LMLLKGDP 127

Query: 311 RHFIYHPIDQPAGLIYAQL 329
            H  +  +DQ   L+  +L
Sbjct: 128 AHISHFELDQRLFLLMRKL 146


>At1g01310.1 68414.m00047 allergen V5/Tpx-1-related family protein
          similar to pathogenesis related protein-1 GB:AAC25629
          GI:3290004 from [Zea mays]; contains Pfam profile
          PF00188: SCP-like extracellular protein
          Length = 241

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 3  WTSTNRIYAKPSSTSANETPSPSLASPRVALTAAEDSGGRF 43
          W+ T +I  + SST  +   SPS  S R+ L+    +G RF
Sbjct: 26 WSGTAQINHEDSSTKPSVKNSPSATSTRLLLSPPSFTGNRF 66


>At3g59600.1 68416.m06650 DNA-directed RNA polymerase I, II, and
           III, putative similar to SP|P52434 DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide (EC
           2.7.7.6) (RPB17) (RPB8) {Homo sapiens}; contains Pfam
           profile PF03870: RNA polymerase Rpb8
          Length = 146

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 252 GPPDTGVYSPSVQHTLYQAEKTVLE-KVSEITWIKMTMPNKHYLNIDMSKFPVNVTKGDP 310
           G PDTG ++P  + TL    + ++  K+ +I+      P K  L +      + + +GDP
Sbjct: 70  GTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTP-KAELYVSFGGL-LMLLQGDP 127

Query: 311 RHFIYHPIDQPAGLIYAQL 329
            H  +  +DQ   L+  +L
Sbjct: 128 AHISHFELDQRLFLLMRKL 146


>At2g37320.1 68415.m04577 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 103 TVYLLAKKYGVKTPEEFGAVVVNHFLYMYKQVLEAKCRVIE 143
           TV  L K  G+KT      + +N++++M+K    + CR++E
Sbjct: 445 TVRKLMKDKGLKTNPGCSWIEINNYVFMFKAEDGSNCRMLE 485


>At4g18230.1 68417.m02708 expressed protein predicted gene M02B7.4,
           Caenorhabditis elegans, PID:G1572781
          Length = 233

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 158 AFVFSPIATRWSEVSQTRHEAVVVKSGLSGLRVLK 192
           AF+F  +  RWS +      A V K  LSGL + K
Sbjct: 171 AFLFKVLGIRWSSIFYVESVARVKKLSLSGLLLYK 205


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,122,226
Number of Sequences: 28952
Number of extensions: 335435
Number of successful extensions: 813
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 6
length of query: 337
length of database: 12,070,560
effective HSP length: 81
effective length of query: 256
effective length of database: 9,725,448
effective search space: 2489714688
effective search space used: 2489714688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)