GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001332-TA|BGIBMGA001332-PA|undefined
         (198 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    29   0.35 
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    28   0.81 
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   1.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.9  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   5.7  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   7.6  
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    25   10.0 
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    25   10.0 
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   10.0 
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   10.0 

>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 33  VYTGGSWSIWLATREGAWGWLADSFTHYFRMALV 66
           +YT   W ++L  +E  W ++   F HYF  ALV
Sbjct: 453 IYTWWGW-LYLDLKERRWLYVYACFAHYFSFALV 485



 Score = 29.5 bits (63), Expect = 0.35
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 91  VYTGGSWSIWLATREGAWGWLADSFTHYFRMALV 124
           +YT   W ++L  +E  W ++   F HYF  ALV
Sbjct: 453 IYTWWGW-LYLDLKERRWLYVYACFAHYFSFALV 485


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 73  WQAAFANLPMIPWAEVCLVYTGGSWSIWLATREGAWGWLADSF----THYFRMALVHLGL 128
           + A+F  LP+    E C + +G  WS+ + + E   GW  DS     T+   +A+ +LG+
Sbjct: 149 FDASFIFLPINDTNE-CGIESGSHWSLLVVSVEKGLGWYYDSMSNGNTNDCNLAIKNLGI 207



 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 31  CLVYTGGSWSIWLATREGAWGWLADSF----THYFRMALVHLGL 70
           C + +G  WS+ + + E   GW  DS     T+   +A+ +LG+
Sbjct: 164 CGIESGSHWSLLVVSVEKGLGWYYDSMSNGNTNDCNLAIKNLGI 207


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 71  PGWQAAFANLPMIPWAEVCL 90
           P W++AF ++P   WA+ CL
Sbjct: 160 PTWKSAFRDVPDKDWAKTCL 179


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 1   MTRQNTGPRPVLNTKSKVFELDICRYIGKVCL 32
           M ++N      +  + ++F+LDIC Y G + L
Sbjct: 857 MNKRNAISHTYMQIQEQLFQLDICEYSGDIFL 888


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 155 LLEKADSENNSASVNNETG-LNHIDPNIFKTSARHHKNATRH 195
           LL+  + EN+ +S +NE G L   D    K S ++    T H
Sbjct: 939 LLDDEEEENDMSSTSNEAGNLKKYDQPNLKVSGKNDSFVTHH 980


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 154  HLLEKADSENNSASVNNETGLNHIDPNIFKTSARHHKNATRHNVT 198
            H+LE+A SENN   ++NE     +D         HHK   R  +T
Sbjct: 1395 HVLERAMSENN--KMDNEAMDGFLDKLRNVKLESHHKPRNRSAIT 1437


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 37  GSWSIWLATREGAWGWLADSFTHYFRMALVHLGLPGWQAAFANLPMI-PWAEVCLVYTGG 95
           G+W  W          L+  F     + L  L L   Q +  + P+I PW   C ++T  
Sbjct: 299 GAWISWCKPSSAV---LSQIFGVKTGLGLFPLTLDWAQISSLSNPLITPWWATCCIFTSF 355

Query: 96  SWSIWL 101
            + IW+
Sbjct: 356 VFWIWI 361


>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 8   PRPVLNTKSKVFELDICRYIGKVCLVYT 35
           P+P   T      + IC+++GKV L  T
Sbjct: 193 PKPAFATLPLSITVRICKFVGKVSLFTT 220


>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 47  EGAWGWLADSFTHYFR 62
           EGAW  L D F  Y+R
Sbjct: 227 EGAWPTLIDEFVSYYR 242



 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 105 EGAWGWLADSFTHYFR 120
           EGAW  L D F  Y+R
Sbjct: 227 EGAWPTLIDEFVSYYR 242


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/35 (28%), Positives = 22/35 (62%)

Query: 148 FLLLAPHLLEKADSENNSASVNNETGLNHIDPNIF 182
           FL++  +L+ + D+E +S ++ N+  L H+  + F
Sbjct: 502 FLIIFNNLVHETDTETDSETLLNDLDLLHVIYDFF 536


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 153 PHLLEKADSENNSASVNNETGLNHIDPNIF 182
           PHLL   D   NS     E   NH+   +F
Sbjct: 611 PHLLALRDDIFNSNDSRGEEAYNHVPEQLF 640


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.135    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,002,346
Number of Sequences: 5004
Number of extensions: 42436
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 17
length of query: 198
length of database: 2,362,478
effective HSP length: 69
effective length of query: 129
effective length of database: 2,017,202
effective search space: 260219058
effective search space used: 260219058
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)