GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001332-TA|BGIBMGA001332-PA|undefined
         (198 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0209 + 15550558-15550746                                         28   4.4  

>12_02_0209 + 15550558-15550746
          Length = 62

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 39 WSIWLATREGAWGWL 53
          W  W+  R GAWGW+
Sbjct: 43 WRRWIRWRGGAWGWI 57



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 97  WSIWLATREGAWGWL 111
           W  W+  R GAWGW+
Sbjct: 43  WRRWIRWRGGAWGWI 57


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.135    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,756,621
Number of Sequences: 37544
Number of extensions: 291476
Number of successful extensions: 517
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 2
length of query: 198
length of database: 14,793,348
effective HSP length: 78
effective length of query: 120
effective length of database: 11,864,916
effective search space: 1423789920
effective search space used: 1423789920
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)