GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001332-TA|BGIBMGA001332-PA|undefined
         (198 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37949| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   6e-13
SB_39363| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.090
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_16056| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_53011| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_56439| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 27   7.8  

>SB_37949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 7/88 (7%)

Query: 4   QNTGPRPVLNTKSKVFELDICRYIGKVCLVY-------TGGSWSIWLATREGAWGWLADS 56
           +N   +P  +++SK+FELD C   GKVCLVY       T     +WL  R   W +++++
Sbjct: 45  ENGHVKPHFDSRSKLFELDPCDGFGKVCLVYKDVKAGVTICKPEVWLLDRALEWSFISNT 104

Query: 57  FTHYFRMALVHLGLPGWQAAFANLPMIP 84
           F+ YFRM ++HLGLP WQ  F++  + P
Sbjct: 105 FSDYFRMMIMHLGLPLWQYIFSDAGISP 132



 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 12/122 (9%)

Query: 81  PMIPWAEVCLVY-------TGGSWSIWLATREGAWGWLADSFTHYFRMALVHLGLPGWQA 133
           P   + +VCLVY       T     +WL  R   W +++++F+ YFRM ++HLGLP WQ 
Sbjct: 64  PCDGFGKVCLVYKDVKAGVTICKPEVWLLDRALEWSFISNTFSDYFRMMIMHLGLPLWQY 123

Query: 134 AFANLPMIPWAEQLFLLLAP-HLLEKADSENNSASVN-NE--TGLNHIDPN-IFKTSARH 188
            F++  + P  +Q F L AP  L   A+ ++N A    NE  T  N +D N +FK  +  
Sbjct: 124 IFSDAGISPETKQWFNLYAPVRLAVDAEGKSNPAPQQANEVSTVTNKLDINKLFKGKSDK 183

Query: 189 HK 190
           H+
Sbjct: 184 HR 185


>SB_39363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 33.9 bits (74), Expect = 0.090
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 28  GKVCLVYTGGSWSIW-LATREGAWG---WLADSFTHYFRMALVHLGLPGWQAAFANLPMI 83
           GK  L+   G+W    L T+EGAWG    L   +     M L   G   W          
Sbjct: 264 GKGVLLTQEGAWGKGVLLTQEGAWGRGMLLTQEWARGRGMLLTQEG--AWGKGMLLTQEG 321

Query: 84  PWAEVCLVYTGGSWSI-WLATREGAWG 109
            W    L+   G+W    L T+EGAWG
Sbjct: 322 AWGRGMLLTQEGAWGRGMLLTQEGAWG 348


>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 24  CRYIGKVCLVYTGGSWSIWLATR---EGAWGWLA 54
           CRYI       T  S   W+A R   +G+W W A
Sbjct: 273 CRYISPAAYTMTTSSGLEWIADRGALQGSWAWCA 306


>SB_16056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 79  NLPMIPWAEVCLVYTG-GSWSIWLA 102
           ++P+IPWA     +TG   WS+W+A
Sbjct: 169 SVPLIPWAFTMCEFTGIVLWSMWVA 193


>SB_53011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 14  TKSKVFELDICRYIGKVCLVYTGGSWSIWLATREGA 49
           T  K    D+ R   + CL+Y  G WSI  ++  GA
Sbjct: 344 TARKQHVWDVTRVAARFCLLYDNGRWSIRGSSGRGA 379


>SB_56439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 13 NTKSKVFELDICRYIG-KVCLVYTGGSWS 40
          ++KSKVF L+  +    K+C  Y GGSWS
Sbjct: 7  SSKSKVFSLEERKIQAHKLCGEYLGGSWS 35


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 120  RMALVHLGLPGWQAAFANLPMIPWAEQLFLLLAPHLLEKADSENN-SASVNNETGLNHID 178
            +M   H+G+   Q + A  P++P A Q +  + P+ L    S+++  A+++ +  + + +
Sbjct: 950  QMTPAHIGISAPQPSIAQAPLLPQAPQ-YPQINPYALSPLPSQSDEEATLDQQPQVKNFE 1008

Query: 179  P 179
            P
Sbjct: 1009 P 1009


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.135    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,333,595
Number of Sequences: 59808
Number of extensions: 298289
Number of successful extensions: 613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 15
length of query: 198
length of database: 16,821,457
effective HSP length: 79
effective length of query: 119
effective length of database: 12,096,625
effective search space: 1439498375
effective search space used: 1439498375
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)