GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001332-TA|BGIBMGA001332-PA|undefined
         (198 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   6.2  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   6.2  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    23   8.2  

>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 140 MIPWAEQLFLLLAPHLL--EKADSENNSASVNNET 172
           M PW  ++F+ L P +L  E+   E+  +  +++T
Sbjct: 336 MAPWVHRVFIELLPKVLCIERPKKEDEPSDNDDQT 370


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 84   PWAEVCLVYTGGSWSIWLATREG 106
            PW +VC   T   WS+ L++  G
Sbjct: 1298 PWDKVCRGETNRRWSMALSSMGG 1320


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 140 MIPWAEQLFLLLAPHLL 156
           M PW  + F+L  P LL
Sbjct: 349 MAPWVRKFFILRLPKLL 365


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.135    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,393
Number of Sequences: 2123
Number of extensions: 9336
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 3
length of query: 198
length of database: 516,269
effective HSP length: 61
effective length of query: 137
effective length of database: 386,766
effective search space: 52986942
effective search space used: 52986942
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 46 (22.6 bits)