GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001332-TA|BGIBMGA001332-PA|undefined
         (198 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81485-5|CAB03976.1|  151|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical
           protein ZK858.1 protein.
          Length = 841

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 121 MALVHLGLPGWQAAFANLPMIPWAEQLFLLLAPHLLEKADSENNSASVNNETGLNHIDPN 180
           MA+V++G   ++ A    PM P +    +    HL +  +   ++ S  + T L+H  P 
Sbjct: 761 MAVVNVGRGSYRNALTTSPMTPPSAHTSMQKQHHLRKDNECGFDNNSATSSTDLSHHQPQ 820

Query: 181 I 181
           +
Sbjct: 821 L 821


>Z81485-5|CAB03976.1|  151|Caenorhabditis elegans Hypothetical
           protein C49F5.5 protein.
          Length = 151

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 145 EQLFLLLAPHLLEKADSENNSASVNNE 171
           EQL LLL  ++  K D EN  A++N +
Sbjct: 56  EQLILLLHANVCTKRDRENYQAAINGQ 82


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.135    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,312,468
Number of Sequences: 27539
Number of extensions: 216781
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 2
length of query: 198
length of database: 12,573,161
effective HSP length: 78
effective length of query: 120
effective length of database: 10,425,119
effective search space: 1251014280
effective search space used: 1251014280
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)