GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001332-TA|BGIBMGA001332-PA|undefined
         (198 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 140 MIPWAEQLFLLLAPHLL 156
           M PW +++F+ + P LL
Sbjct: 341 MAPWVKRVFIHILPRLL 357


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 140 MIPWAEQLFLLLAPHLL 156
           M PW +++F+ + P LL
Sbjct: 341 MAPWVKRVFIHILPRLL 357


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 140 MIPWAEQLFLLLAPHLL 156
           M PW  Q+FL   P LL
Sbjct: 346 MSPWVRQVFLNWMPRLL 362


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 140 MIPWAEQLFLLLAPHLL 156
           M PW  ++F+ + P LL
Sbjct: 337 MAPWVRRVFIHVLPRLL 353


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 140 MIPWAEQLFLLLAPHLL 156
           M PW  ++F+   P LL
Sbjct: 332 MAPWVRKIFIRRLPKLL 348


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.135    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,112
Number of Sequences: 429
Number of extensions: 2693
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 198
length of database: 140,377
effective HSP length: 55
effective length of query: 143
effective length of database: 116,782
effective search space: 16699826
effective search space used: 16699826
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 42 (21.0 bits)