GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001332-TA|BGIBMGA001332-PA|undefined
         (198 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote...    29   1.6  
At5g16190.1 68418.m01892 glycosyl transferase family 2 protein s...    28   3.7  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    28   3.7  
At4g20070.1 68417.m02936 peptidase M20/M25/M40 family protein co...    27   6.5  
At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal hydrolase-r...    27   6.5  
At2g06200.1 68415.m00682 expressed protein                             27   8.6  

>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
           protein-related contains 6 WD-40 repeats (PF00400) (2
           weak); related to KIAA1988 protein (GI:18916910) [Homo
           sapiens]
          Length = 810

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 113 DSFTHYFRMALVHLGLPGWQAAFANLPMIPWAEQLFLLLAPHLLEKADSENNSASVNNET 172
           D F    ++ L  +G   WQ A A + +   +++  L+   +L EK+D E  S  V +++
Sbjct: 94  DLFDLKQKVVLDSIGFSIWQIALAPISIEAESKEAKLIQNGYLSEKSDDEEES-GVEDDS 152

Query: 173 GLNHIDPNI 181
            L+ +D  +
Sbjct: 153 ELDELDEKV 161


>At5g16190.1 68418.m01892 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 504

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 37  GSWSIW-LATREGAWGWLADSFTHYFRMALVHLGLPGWQAAFAN 79
           G+  +W LA  E A GW   +      +A V +GL GW+  F N
Sbjct: 242 GTAGVWRLAAMEEAGGWKDRTTVEDMDLA-VRVGLHGWKFVFVN 284



 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 95  GSWSIW-LATREGAWGWLADSFTHYFRMALVHLGLPGWQAAFAN 137
           G+  +W LA  E A GW   +      +A V +GL GW+  F N
Sbjct: 242 GTAGVWRLAAMEEAGGWKDRTTVEDMDLA-VRVGLHGWKFVFVN 284


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
            DNA polymerase III holoenzyme tau subunit [Thermus
            thermophilus] GI:2583049
          Length = 1218

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 149  LLLAPHLLEKADSENNSASVNNETGLN 175
            LL+ PH   K +  N S  +NN  GLN
Sbjct: 994  LLVVPHQTRKPEMTNKSGHLNNIAGLN 1020


>At4g20070.1 68417.m02936 peptidase M20/M25/M40 family protein
           contains similarity to hydantoin utilization protein C
           [Pseudomonas sp.] SWISS-PROT:Q01264; contains Pfam
           profile PF01546: Peptidase family M20/M25/M40
          Length = 525

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 147 LFLLLAPHLLEKADSENNSASVNNETGLNHIDPNIFKTSARHH 189
           +F LL+P  L  + S ++S+S ++ +  +HI   I +T    H
Sbjct: 43  VFSLLSPLALSSSSSSSSSSSDSSSSSSSHISLGIGETEGTKH 85


>At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1122

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)

Query: 155 LLEKADSENNSASVNNETGLNHIDPNIF 182
           LL++   ++N+A +N+E  +N  DPN++
Sbjct: 456 LLDRRLLKSNNAPINDEGTINVFDPNVY 483


>At2g06200.1 68415.m00682 expressed protein
          Length = 244

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 136 ANLPMIPWAEQLFLLLAPHLLEKADSENNSASVNNETGLNHIDPNIFK 183
           AN+P+ P    LFL+  P L   + S ++S+S  + T   H   N+++
Sbjct: 27  ANMPVPP--HLLFLIKRPFLFSSSSSSSSSSSFFSPTLSPHFGWNVYE 72


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.135    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,248,511
Number of Sequences: 28952
Number of extensions: 219912
Number of successful extensions: 349
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 7
length of query: 198
length of database: 12,070,560
effective HSP length: 77
effective length of query: 121
effective length of database: 9,841,256
effective search space: 1190791976
effective search space used: 1190791976
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)