GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001331-TA|BGIBMGA001331-PA|undefined
         (296 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonin...    29   5.2  
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin...    29   5.2  

>Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical
           protein H39E23.1b protein.
          Length = 1096

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 38  PMMSSGGWSAXXXXXXXXXXSDMANGIHGRGSGQSGLELDSRKR 81
           P  SSGG SA          +  ++  H R +GQSG+   S  R
Sbjct: 68  PAASSGGSSARYSSSGRSHPTSGSSSSHARSTGQSGMSSRSAAR 111


>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 38  PMMSSGGWSAXXXXXXXXXXSDMANGIHGRGSGQSGLELDSRKR 81
           P  SSGG SA          +  ++  H R +GQSG+   S  R
Sbjct: 116 PAASSGGSSARYSSSGRSHPTSGSSSSHARSTGQSGMSSRSAAR 159


>Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical
           protein H39E23.1b protein.
          Length = 1096

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 38  PMMSSGGWSAXXXXXXXXXXSDMANGIHGRGSGQSGLELDSRKR 81
           P  SSGG SA          +  ++  H R +GQSG+   S  R
Sbjct: 68  PAASSGGSSARYSSSGRSHPTSGSSSSHARSTGQSGMSSRSAAR 111


>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 38  PMMSSGGWSAXXXXXXXXXXSDMANGIHGRGSGQSGLELDSRKR 81
           P  SSGG SA          +  ++  H R +GQSG+   S  R
Sbjct: 116 PAASSGGSSARYSSSGRSHPTSGSSSSHARSTGQSGMSSRSAAR 159


>U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 1096

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 38  PMMSSGGWSAXXXXXXXXXXSDMANGIHGRGSGQSGLELDSRKR 81
           P  SSGG SA          +  ++  H R +GQSG+   S  R
Sbjct: 68  PAASSGGSSARYSSSGRSHPTSGSSSSHARSTGQSGMSSRSAAR 111


>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 1192

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 38  PMMSSGGWSAXXXXXXXXXXSDMANGIHGRGSGQSGLELDSRKR 81
           P  SSGG SA          +  ++  H R +GQSG+   S  R
Sbjct: 116 PAASSGGSSARYSSSGRSHPTSGSSSSHARSTGQSGMSSRSAAR 159


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,278,457
Number of Sequences: 27539
Number of extensions: 83065
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 6
length of query: 296
length of database: 12,573,161
effective HSP length: 81
effective length of query: 215
effective length of database: 10,342,502
effective search space: 2223637930
effective search space used: 2223637930
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)