GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001330-TA|BGIBMGA001330-PA|IPR001202|WW/Rsp5/WWP
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)                    54   3e-07
SB_56887| Best HMM Match : TolA (HMM E-Value=0.66)                     36   0.15 
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)                     33   1.1  
SB_10764| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               32   1.9  
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)                      32   1.9  
SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   4.4  
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 31   4.4  
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   4.4  
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.8  
SB_30997| Best HMM Match : DUF1172 (HMM E-Value=0.38)                  30   5.8  
SB_15992| Best HMM Match : RCSD (HMM E-Value=8.5)                      30   7.7  
SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)                  30   7.7  

>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
          Length = 678

 Score = 54.4 bits (125), Expect = 3e-07
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 61  PWSACYDEASGFTYYWNQQTNAVTWEAPPEY 91
           PW AC DEAS   YYWNQ+TN V WE PP +
Sbjct: 114 PWQACRDEASNCYYYWNQETNEVQWEMPPGF 144



 Score = 33.5 bits (73), Expect = 0.62
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 554 LQGAARALRTHE---APPGWTCDFLRAEGRYRYVRDSDGLVQWEYP 596
           LQ A   ++ +E   +PPGW+C + R   +Y Y        QWE+P
Sbjct: 404 LQEAEEHIKEYEESASPPGWSCHWDRKYKQYFYTNLETKKSQWEFP 449


>SB_56887| Best HMM Match : TolA (HMM E-Value=0.66)
          Length = 404

 Score = 35.5 bits (78), Expect = 0.15
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 18/139 (12%)

Query: 300 EDKHEEAIDNTNPPNDSIDDLLSEIEKTELPKVXXXXXXXXXXGNSKPGSQTSSPHRDLS 359
           ED  ++  D+ +   D  DD   + EK +  +            +S   S +SS   D S
Sbjct: 194 EDDDDDKKDDDDDKTDDDDDK-KDAEKEDKDE----SGNESDSSSSSSSSSSSSSDDDDS 248

Query: 360 EHKTLFPSAKNIDDDVSNKD---IPNNAEVEKPERSASPPEKSSNIYLSDLSETKEVVRK 416
           +H+      K+ DDD   KD     ++ E EK E     P ++  + + D +E KEVV+ 
Sbjct: 249 DHE------KDADDDDEKKDKDEYKDDFESEKDEGKEKEPAEAEEV-IEDATEPKEVVQD 301

Query: 417 KLRISNSV-LPDRSKTETP 434
            + I     +PD  +TE P
Sbjct: 302 TVDIKEEEDIPD--ETEGP 318


>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
          Length = 693

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 34  SGVKAPIKTQPSEAARSGIHR--APISHCPWSACYDEASGFTYYWNQQTNAVTWEAPPE 90
           S V+ P +++P E  +    +   P    PW+  +    G TY++N  +   TW+ P E
Sbjct: 141 SSVQTPEQSKPEEEKKPKPKKKKVPKKKTPWTE-HKAPDGRTYFYNNDSKVSTWQKPDE 198


>SB_10764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 1   MSKINPLAGLIGNYDDSEEEGDDTSMQS---VAVIPSGVKAPIKTQ 43
           ++K +PL GL+   DD EE+ DD S  S   +A++PS V   +  Q
Sbjct: 194 VNKKSPLMGLVDYPDDDEEDDDDESGSSPAKLALLPSSVPRGVHGQ 239


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 9/145 (6%)

Query: 295 LQEIIEDKHEEAIDN--TNPPNDSIDDLL--SEIEKTELPKVXXXXXXXXXXGNSKPGSQ 350
           L  I+E + E+AI+   T+P N   ++++  ++ ++    KV              P ++
Sbjct: 245 LPAIVESEPEDAIETHATSPMNQRYENVIIQNDFKEESEKKVQDLAADDDEVVAEAPHAK 304

Query: 351 TSSPHRDLSEHKTLFPSAKNIDDDVSNKDIPNNAEVEKPERSASPPEKSSNIYLSDLSET 410
            S+P     +   +     N D  V  +D P       P R  SP   + +  + D SE 
Sbjct: 305 ESAPPVLAQDDDEVL----NEDGFVDARDDPTETTCNSPPRPVSPSLVNFSCIVEDTSEI 360

Query: 411 KEVVRKKLRISNSVLPDRSKTETPS 435
           K     ++ I  S+  + ++T+ PS
Sbjct: 361 KS-HNSEMIIKESLPDECAETKAPS 384


>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
          Length = 1248

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 9/145 (6%)

Query: 295 LQEIIEDKHEEAIDN--TNPPNDSIDDLL--SEIEKTELPKVXXXXXXXXXXGNSKPGSQ 350
           L  I+E + E+AI+   T+P N   ++++  ++ ++    KV              P ++
Sbjct: 24  LPAIVESEPEDAIETHATSPMNQRYENVIIQNDFKEESEKKVQDLAADDDEVVAEAPHAK 83

Query: 351 TSSPHRDLSEHKTLFPSAKNIDDDVSNKDIPNNAEVEKPERSASPPEKSSNIYLSDLSET 410
            S+P     +   +     N D  V  +D P       P R  SP   + +  + D SE 
Sbjct: 84  ESAPPVLAQDDDEVL----NEDGFVDARDDPTETTCNSPPRPVSPSLVNFSCIVEDTSEI 139

Query: 411 KEVVRKKLRISNSVLPDRSKTETPS 435
           K     ++ I  S+  + ++T+ PS
Sbjct: 140 KS-HNSEMIIKESLPDECAETKAPS 163


>SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1251

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 9   GLIGNYDDSEEEGDDTSMQSVAVIPSGV--KAPIKTQPSEAARS 50
           G+ G+Y ++   GD+    S AVIPSGV    PI   PS+  R+
Sbjct: 414 GMSGSYGNANPMGDNVIGSSGAVIPSGVVDVNPIVDAPSKEERN 457


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 365 FPSAKNIDDDVSNKDIPNNAEVEKP--ERSASP-PEKSSNIYLSDLSETKEVVRKKLRIS 421
           F S K+ +D+   +++  +   +KP  +++ +P PE + N   S+L    E  R  L+IS
Sbjct: 187 FNSYKSEEDEKVVEEVYLSVMQDKPLEKQTETPKPESAKNTSESELEANSENARHALQIS 246

Query: 422 N---SVLPDRSKTETPSYTTKYSQFIEGFSSERTGLGFTQEPMEDDCPKTTIS 471
           N   S++ D +        T Y+ F E  S +  G   ++ P  D  P ++ S
Sbjct: 247 NYADSLVRDTTIKAVKDVQT-YA-FAEDLSIDIIGDAMSEIPQTDSVPSSSSS 297


>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 39  PIKTQPSEAARSGIHRAPISHCPWSACYDEASGFTYYWNQQTNAVTWEAP 88
           P   +PS +ARS   + P     W    D A+G T+Y +  T   TW  P
Sbjct: 165 PDVEEPSASARSSAEQPPPLPEGWEERQD-ANGRTFYIDHTTRTTTWVRP 213


>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 317  IDDLLSEIEKTELPKVXXXXXXXXXXGNSKPGSQTSSPHRDLSEHKTLFPSAKNIDDDVS 376
            I +++ E++  + P+             + P  Q S  HRD        P+A+ +     
Sbjct: 1116 IGNVMYEVQPDKFPQQHVRRHADQLCERTAPPCQDSMSHRDHQLLPMTTPAAEPLSCTEG 1175

Query: 377  NKDIPNNAEVEKPERSASPPEKSSNIYLSDLSETKEVVRKKLRISNSVLPDR 428
            + D        +  R  +PP  S  +   D  E  ++ R+  R +  + PDR
Sbjct: 1176 DGDATETLNPPQTTRQQNPPTISEEV-PEDAGE-PDMPRRSSRANKGIAPDR 1225


>SB_30997| Best HMM Match : DUF1172 (HMM E-Value=0.38)
          Length = 505

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 23/83 (27%), Positives = 34/83 (40%)

Query: 388 KPERSASPPEKSSNIYLSDLSETKEVVRKKLRISNSVLPDRSKTETPSYTTKYSQFIEGF 447
           K  R  +   + S     D  ETK+  RKK  I  S   D ++    +    YS F + F
Sbjct: 33  KRARKMTKVMEESKKQAEDDGETKDKKRKKNHIEPSQKQDLAEGAKDASLEIYSSFRQVF 92

Query: 448 SSERTGLGFTQEPMEDDCPKTTI 470
            ++      T++P E   P T I
Sbjct: 93  GAQLDLTSETRQPPETSTPVTPI 115


>SB_15992| Best HMM Match : RCSD (HMM E-Value=8.5)
          Length = 138

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 317 IDDLLSEIEKTELPKVXXXXXXXXXXGNSKPGSQTSSPHRDLSEHKTLFPSAKNIDDDVS 376
           I +++ E++  + P+             + P  Q S  HRD        P+A+ +     
Sbjct: 26  IGNVMYEVQPDKFPQQHVRRHADQLCERTAPPYQDSMSHRDHQLLPMTTPAAEPLSCTEE 85

Query: 377 NKDIPNNAEVEKPERSASPPEKSSNIYLSDLSETKEVVRKKLRISNSVLPDR 428
           + D        +  R  +PP  S  +   D  E  ++ R+  R +  + PDR
Sbjct: 86  DGDATETLNPPQTTRQQNPPTISEEV-PEDAGE-PDMPRRSSRANKGIAPDR 135


>SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)
          Length = 1086

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 317  IDDLLSEIEKTELPKVXXXXXXXXXXGNSKPGSQTSSPHRDLSEHKTLFPSAKNIDDDVS 376
            I +++ E++  + P+             + P  Q S  HRD        P+A+ +     
Sbjct: 974  IGNVMYEVQPDKFPQQHVRRHADQLCERTAPPYQDSMSHRDHQLLPMTTPAAEPLSCTEE 1033

Query: 377  NKDIPNNAEVEKPERSASPPEKSSNIYLSDLSETKEVVRKKLRISNSVLPDR 428
            + D        +  R  +PP  S  +   D  E  ++ R+  R +  + PDR
Sbjct: 1034 DGDATETLNPPQTTRQQNPPTISEEV-PEDAGE-PDMPRRSSRANKGIAPDR 1083


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.308    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,351,125
Number of Sequences: 59808
Number of extensions: 762288
Number of successful extensions: 1958
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1953
Number of HSP's gapped (non-prelim): 16
length of query: 734
length of database: 16,821,457
effective HSP length: 87
effective length of query: 647
effective length of database: 11,618,161
effective search space: 7516950167
effective search space used: 7516950167
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 64 (29.9 bits)