Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001330-TA|BGIBMGA001330-PA|IPR001202|WW/Rsp5/WWP
(734 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084153-7|AAK84593.1| 451|Caenorhabditis elegans Hypothetical ... 33 0.72
AF016687-2|AAC48091.2| 280|Caenorhabditis elegans Hypothetical ... 32 1.3
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 32 1.7
L16559-7|AAA27930.1| 161|Caenorhabditis elegans Hypothetical pr... 32 1.7
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 32 1.7
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 32 1.7
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 32 1.7
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 31 2.2
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 31 2.2
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 31 2.2
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 31 2.9
U88178-4|AAC24411.1| 460|Caenorhabditis elegans Hypothetical pr... 31 3.8
AL034392-2|CAA22305.1| 120|Caenorhabditis elegans Hypothetical ... 31 3.8
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 30 6.7
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 30 6.7
U58758-6|AAO38577.1| 604|Caenorhabditis elegans Hypothetical pr... 29 8.9
U58758-5|AAL11107.1| 693|Caenorhabditis elegans Hypothetical pr... 29 8.9
U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical pr... 29 8.9
U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical pr... 29 8.9
AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical ... 29 8.9
AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical ... 29 8.9
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 29 8.9
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 29 8.9
>AC084153-7|AAK84593.1| 451|Caenorhabditis elegans Hypothetical
protein Y22D7AL.4 protein.
Length = 451
Score = 33.1 bits (72), Expect = 0.72
Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 13/152 (8%)
Query: 317 IDDLLSEIEKT-ELPKVXXXXXXXXXXGNSKPGSQTSSPHRDLSEHKTLFPSAKNIDDDV 375
I + + +++K E P +S+ S++S+ + T + +N + V
Sbjct: 280 IGEKIDKVDKIDEKPSEKGEISSESTSSDSESESESSTDSETTTTTTTT--TTENSSETV 337
Query: 376 SNKDIPNNAE------VEKPERSASPPEKSSNIYLSDLSETKEVVRKK----LRISNSVL 425
D P AE +E P + PPE + Y+++L + +V KK R++ +
Sbjct: 338 RKIDTPPEAENKEESIIEHPFSAREPPESPTTAYMNNLRQKIRLVIKKKNFEKRMNRASR 397
Query: 426 PDRSKTETPSYTTKYSQFIEGFSSERTGLGFT 457
R + TP+ + YS+ + G FT
Sbjct: 398 QARFQGLTPASSLPYSKVVHSPRPTLFGFPFT 429
>AF016687-2|AAC48091.2| 280|Caenorhabditis elegans Hypothetical
protein T21D12.3 protein.
Length = 280
Score = 32.3 bits (70), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 62 WSACYDEASGFTYYWNQQTNAVTWEAP 88
W YDE Y+WN+ T+ V W +P
Sbjct: 95 WVEVYDEGLAKYYFWNKTTDEVCWYSP 121
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 31.9 bits (69), Expect = 1.7
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 293 PELQEIIEDKHEEAIDNTNPPNDSIDDLLSEIEKTELPKVXXXXXXXXXXGNSKPGSQTS 352
P+ I+E E I+ T + SE +T + K P +
Sbjct: 1490 PDATNIVEVSSETTIEKTETTMTTEMTHESEESRTSVKKEKTPEKVDEKP--KSPTKKDK 1547
Query: 353 SPHRDLSEHKTLFPSAKNIDDDVSNKDIPNNAEVEKPERSASPPEKSSNIYLSDLSETK- 411
SP + ++E + + V K + + PE+ ASP +KS N S + K
Sbjct: 1548 SPEKSITEEIKSPVKKEKSPEKVEEKPASPTKKEKSPEKPASPTKKSENEVKSPTKKEKS 1607
Query: 412 --EVVRKKLRISNSVLPDRSKTETPSYTTK 439
+ V ++L+ P+++ + S T K
Sbjct: 1608 PEKSVVEELKSPKEKSPEKADDKPKSPTKK 1637
>L16559-7|AAA27930.1| 161|Caenorhabditis elegans Hypothetical
protein C06E1.1 protein.
Length = 161
Score = 31.9 bits (69), Expect = 1.7
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 553 WLQGAARALRTHEAPPGWTCDFLRAEGRYRYVRDS--DGLVQWEYPAVATTDMDISTTPP 610
W+ A +L + A PG + G + + + D L +W PA+ T+ + TPP
Sbjct: 95 WILYAMVSLFDYSALPGVPFYYFAKTGLFLSITTNGFDKLKEWSEPALKFTETWVLVTPP 154
Query: 611 HPGFE 615
PG E
Sbjct: 155 PPGEE 159
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 31.9 bits (69), Expect = 1.7
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 293 PELQEIIEDKHEEAIDNTNPPNDSIDDLLSEIEKTELPKVXXXXXXXXXXGNSKPGSQTS 352
P+ I+E E I+ T + SE +T + K P +
Sbjct: 1490 PDATNIVEVSSETTIEKTETTMTTEMTHESEESRTSVKKEKTPEKVDEKP--KSPTKKDK 1547
Query: 353 SPHRDLSEHKTLFPSAKNIDDDVSNKDIPNNAEVEKPERSASPPEKSSNIYLSDLSETK- 411
SP + ++E + + V K + + PE+ ASP +KS N S + K
Sbjct: 1548 SPEKSITEEIKSPVKKEKSPEKVEEKPASPTKKEKSPEKPASPTKKSENEVKSPTKKEKS 1607
Query: 412 --EVVRKKLRISNSVLPDRSKTETPSYTTK 439
+ V ++L+ P+++ + S T K
Sbjct: 1608 PEKSVVEELKSPKEKSPEKADDKPKSPTKK 1637
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 31.9 bits (69), Expect = 1.7
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 293 PELQEIIEDKHEEAIDNTNPPNDSIDDLLSEIEKTELPKVXXXXXXXXXXGNSKPGSQTS 352
P+ I+E E I+ T + SE +T + K P +
Sbjct: 1490 PDATNIVEVSSETTIEKTETTMTTEMTHESEESRTSVKKEKTPEKVDEKP--KSPTKKDK 1547
Query: 353 SPHRDLSEHKTLFPSAKNIDDDVSNKDIPNNAEVEKPERSASPPEKSSNIYLSDLSETK- 411
SP + ++E + + V K + + PE+ ASP +KS N S + K
Sbjct: 1548 SPEKSITEEIKSPVKKEKSPEKVEEKPASPTKKEKSPEKPASPTKKSENEVKSPTKKEKS 1607
Query: 412 --EVVRKKLRISNSVLPDRSKTETPSYTTK 439
+ V ++L+ P+++ + S T K
Sbjct: 1608 PEKSVVEELKSPKEKSPEKADDKPKSPTKK 1637
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 31.9 bits (69), Expect = 1.7
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 293 PELQEIIEDKHEEAIDNTNPPNDSIDDLLSEIEKTELPKVXXXXXXXXXXGNSKPGSQTS 352
P+ I+E E I+ T + SE +T + K P +
Sbjct: 1490 PDATNIVEVSSETTIEKTETTMTTEMTHESEESRTSVKKEKTPEKVDEKP--KSPTKKDK 1547
Query: 353 SPHRDLSEHKTLFPSAKNIDDDVSNKDIPNNAEVEKPERSASPPEKSSNIYLSDLSETK- 411
SP + ++E + + V K + + PE+ ASP +KS N S + K
Sbjct: 1548 SPEKSITEEIKSPVKKEKSPEKVEEKPASPTKKEKSPEKPASPTKKSENEVKSPTKKEKS 1607
Query: 412 --EVVRKKLRISNSVLPDRSKTETPSYTTK 439
+ V ++L+ P+++ + S T K
Sbjct: 1608 PEKSVVEELKSPKEKSPEKADDKPKSPTKK 1637
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
protein F13B9.1c protein.
Length = 1609
Score = 31.5 bits (68), Expect = 2.2
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 55 APISHCPWSACYDEASGFTYYWNQQTNAVTWEAPPEYLLALKIAQQQLNMGGSSQVSAAE 114
AP W+ + + YY++QQ A P ++ + QQQ N+ +S +A
Sbjct: 36 APAPQHQWNPATQQQNN--YYYHQQPAA----PPQQHTNPQQPPQQQYNVPTNSHQTAE- 88
Query: 115 WQMYQQVLAEQQ--TKSQTQPP 134
Q YQQ A+QQ ++Q QPP
Sbjct: 89 -QNYQQQWAQQQYQNQAQPQPP 109
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
protein F13B9.1b protein.
Length = 1614
Score = 31.5 bits (68), Expect = 2.2
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 55 APISHCPWSACYDEASGFTYYWNQQTNAVTWEAPPEYLLALKIAQQQLNMGGSSQVSAAE 114
AP W+ + + YY++QQ A P ++ + QQQ N+ +S +A
Sbjct: 36 APAPQHQWNPATQQQNN--YYYHQQPAA----PPQQHTNPQQPPQQQYNVPTNSHQTAE- 88
Query: 115 WQMYQQVLAEQQ--TKSQTQPP 134
Q YQQ A+QQ ++Q QPP
Sbjct: 89 -QNYQQQWAQQQYQNQAQPQPP 109
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
protein F13B9.1a protein.
Length = 1632
Score = 31.5 bits (68), Expect = 2.2
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 55 APISHCPWSACYDEASGFTYYWNQQTNAVTWEAPPEYLLALKIAQQQLNMGGSSQVSAAE 114
AP W+ + + YY++QQ A P ++ + QQQ N+ +S +A
Sbjct: 36 APAPQHQWNPATQQQNN--YYYHQQPAA----PPQQHTNPQQPPQQQYNVPTNSHQTAE- 88
Query: 115 WQMYQQVLAEQQ--TKSQTQPP 134
Q YQQ A+QQ ++Q QPP
Sbjct: 89 -QNYQQQWAQQQYQNQAQPQPP 109
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 31.1 bits (67), Expect = 2.9
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 367 SAKNIDDDVSNKDIPNNAEVEKPERSASPPEKSSNIYLSDLSETKEVVRKKLRISNS 423
+AK+++ KD + + E PE++ PP KSS E KE +KKL+I S
Sbjct: 477 AAKSVEPKTLEKDAEPSRKSESPEKTVEPPAKSS-------EEIKE-EKKKLKIRRS 525
>U88178-4|AAC24411.1| 460|Caenorhabditis elegans Hypothetical
protein W09C3.2 protein.
Length = 460
Score = 30.7 bits (66), Expect = 3.8
Identities = 19/68 (27%), Positives = 28/68 (41%)
Query: 345 SKPGSQTSSPHRDLSEHKTLFPSAKNIDDDVSNKDIPNNAEVEKPERSASPPEKSSNIYL 404
SK GS S + K A ++ DD S+K P N E+ P ++ +IY+
Sbjct: 259 SKRGSVRESTTKKQLLEKNESKKAPSVKDDKSSKPAPKNPSCERTLMKTQPLSEARSIYV 318
Query: 405 SDLSETKE 412
T E
Sbjct: 319 GTGQSTYE 326
>AL034392-2|CAA22305.1| 120|Caenorhabditis elegans Hypothetical
protein Y40B1A.2 protein.
Length = 120
Score = 30.7 bits (66), Expect = 3.8
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 54 RAPISHCPWSACYDEASGFTYYWNQQTNAVTWEAPPEYLLALKIAQQQLNMGGSSQVSAA 113
R P + W+ +SG YY+N++T W+ P E+ A++ GG ++
Sbjct: 3 RVPRTFAGWTEQMS-SSGKMYYYNKKTEISQWDKPAEWPAEGGSAERDKPKGGVNEKPRF 61
Query: 114 EWQMYQQVLAEQQTKS 129
Y + + + + S
Sbjct: 62 AEDRYNEYIGQLSSSS 77
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 29.9 bits (64), Expect = 6.7
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 350 QTSSPHRDLSEHKTLFPSAKNIDDDVSNKDIPNNAEVEKPERSASPPEK-SSNIYLSDLS 408
++ SP+RD+ E +++ S S KD ++ P +S P K S + + +
Sbjct: 2985 RSDSPNRDVVEAQSIHSSNIESHQQFSEKD-DDSQRGPSPVKSEDEPVKHESYKFETSTT 3043
Query: 409 ETKEVVRKKLRISNSVLPDRSKTETPSYTTK 439
ET+E R +L P +S E TT+
Sbjct: 3044 ETREFDRPELDSERLSEPAQSPMEVSPITTE 3074
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 29.9 bits (64), Expect = 6.7
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 350 QTSSPHRDLSEHKTLFPSAKNIDDDVSNKDIPNNAEVEKPERSASPPEK-SSNIYLSDLS 408
++ SP+RD+ E +++ S S KD ++ P +S P K S + + +
Sbjct: 2985 RSDSPNRDVVEAQSIHSSNIESHQQFSEKD-DDSQRGPSPVKSEDEPVKHESYKFETSTT 3043
Query: 409 ETKEVVRKKLRISNSVLPDRSKTETPSYTTK 439
ET+E R +L P +S E TT+
Sbjct: 3044 ETREFDRPELDSERLSEPAQSPMEVSPITTE 3074
>U58758-6|AAO38577.1| 604|Caenorhabditis elegans Hypothetical
protein ZK1127.9e protein.
Length = 604
Score = 29.5 bits (63), Expect = 8.9
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 7 LAGLIGNYDDSEEEGDDTSMQSVAVIPSGVKAPIKTQPSEAARSG--IHRAPISHCPWSA 64
LA + S G + + A + + ++ S I P+S PW
Sbjct: 72 LAAFMAQQKTSSNGGGGMPLSKAQASGAAAAAAVNAEAAKKKDSTRPISSTPVSGTPWCV 131
Query: 65 CYDEASGFTYYWNQQTNAVTWEAPPE 90
+ +++N T WE PP+
Sbjct: 132 VWT-GDDKVFFYNPSTKCSVWERPPD 156
>U58758-5|AAL11107.1| 693|Caenorhabditis elegans Hypothetical
protein ZK1127.9c protein.
Length = 693
Score = 29.5 bits (63), Expect = 8.9
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 7 LAGLIGNYDDSEEEGDDTSMQSVAVIPSGVKAPIKTQPSEAARSG--IHRAPISHCPWSA 64
LA + S G + + A + + ++ S I P+S PW
Sbjct: 72 LAAFMAQQKTSSNGGGGMPLSKAQASGAAAAAAVNAEAAKKKDSTRPISSTPVSGTPWCV 131
Query: 65 CYDEASGFTYYWNQQTNAVTWEAPPE 90
+ +++N T WE PP+
Sbjct: 132 VWT-GDDKVFFYNPSTKCSVWERPPD 156
>U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical
protein ZK1127.9a protein.
Length = 914
Score = 29.5 bits (63), Expect = 8.9
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 7 LAGLIGNYDDSEEEGDDTSMQSVAVIPSGVKAPIKTQPSEAARSG--IHRAPISHCPWSA 64
LA + S G + + A + + ++ S I P+S PW
Sbjct: 293 LAAFMAQQKTSSNGGGGMPLSKAQASGAAAAAAVNAEAAKKKDSTRPISSTPVSGTPWCV 352
Query: 65 CYDEASGFTYYWNQQTNAVTWEAPPE 90
+ +++N T WE PP+
Sbjct: 353 VWT-GDDKVFFYNPSTKCSVWERPPD 377
>U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical
protein ZK1127.9b protein.
Length = 905
Score = 29.5 bits (63), Expect = 8.9
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 7 LAGLIGNYDDSEEEGDDTSMQSVAVIPSGVKAPIKTQPSEAARSG--IHRAPISHCPWSA 64
LA + S G + + A + + ++ S I P+S PW
Sbjct: 284 LAAFMAQQKTSSNGGGGMPLSKAQASGAAAAAAVNAEAAKKKDSTRPISSTPVSGTPWCV 343
Query: 65 CYDEASGFTYYWNQQTNAVTWEAPPE 90
+ +++N T WE PP+
Sbjct: 344 VWT-GDDKVFFYNPSTKCSVWERPPD 368
>AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical
protein H20J18.1b protein.
Length = 909
Score = 29.5 bits (63), Expect = 8.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 95 LKIAQQQLNMGGSSQVSAAEWQMYQQVLAEQQTKSQTQPPA 135
L+ AQQ + Q+ A++ Q QQ+ A+QQ + Q Q A
Sbjct: 149 LQAAQQAQQAQQAQQLQASQQQALQQLQAQQQAQQQAQQQA 189
>AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical
protein H20J18.1a protein.
Length = 947
Score = 29.5 bits (63), Expect = 8.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 95 LKIAQQQLNMGGSSQVSAAEWQMYQQVLAEQQTKSQTQPPA 135
L+ AQQ + Q+ A++ Q QQ+ A+QQ + Q Q A
Sbjct: 149 LQAAQQAQQAQQAQQLQASQQQALQQLQAQQQAQQQAQQQA 189
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 29.5 bits (63), Expect = 8.9
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 366 PSAKNIDDDVSNKDIPNNAEVEKPERSASPPEKSSNIYLSDLS-ETKEVVRKKLRISNSV 424
PS+ N + P E P S SP + ++ S E ++ +
Sbjct: 687 PSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQTTTIT 746
Query: 425 LPDRSKTETPSYTTKYSQFIEGFSSERTGLGFTQEPMEDDCPKTT 469
P+ + TE PS +T Q + E T T+ P + P T
Sbjct: 747 APETTSTEPPSSSTTPVQTTTTTAPETTS---TEPPSSSNTPVQT 788
Score = 29.5 bits (63), Expect = 8.9
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 366 PSAKNIDDDVSNKDIPNNAEVEKPERSASPPEKSSNIYLSDLS-ETKEVVRKKLRISNSV 424
PS+ N + P E P S SP + ++ S E ++ + +
Sbjct: 779 PSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTITAPETTSTEPPSSSNTPVQTTTTT 838
Query: 425 LPDRSKTETPSYTTKYSQFIEGFSSERTGLGFTQEPMEDDCPKTT 469
P+ + TE PS +T Q + E T T+ P P T
Sbjct: 839 APETTSTEPPSSSTSPVQTTTTTAPETTS---TEPPSSSTTPVQT 880
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 29.5 bits (63), Expect = 8.9
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 377 NKDIPNNAEVEKPERSASPPEKSSNIYLSDLSETKEVVRKKL-RISNSVLPDRSKTETP 434
NK + + P+ S + P K+SN+ D E K++ K R+ V + TE P
Sbjct: 53 NKISAGDGGIYAPKFSMNIPSKTSNVGSKDFDEAKKLAAAKARRMLEDVARSKKMTEVP 111
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.308 0.127 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,888
Number of Sequences: 27539
Number of extensions: 569956
Number of successful extensions: 1652
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1614
Number of HSP's gapped (non-prelim): 55
length of query: 734
length of database: 12,573,161
effective HSP length: 87
effective length of query: 647
effective length of database: 10,177,268
effective search space: 6584692396
effective search space used: 6584692396
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 63 (29.5 bits)
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