GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001330-TA|BGIBMGA001330-PA|IPR001202|WW/Rsp5/WWP
         (734 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.96 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   1.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   3.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   8.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   8.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   8.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 26.2 bits (55), Expect = 0.96
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 90  EYLLALKIAQQQLNMGGSSQVSAAEWQMYQQVLAEQQTKSQTQ 132
           E LLA K+ +QQ  M    Q    + Q  Q V+  QQ + Q Q
Sbjct: 404 EKLLAFKMTEQQQQMQAQQQ-HQQQQQQTQHVINAQQPQQQQQ 445


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 371 IDDDVSNKDIPNNAEVEKPERSASPPEKSSNIYLSDLSETKEVVRK 416
           I +D+   D P + E   P ++    E +  IY  D+ ET  VVRK
Sbjct: 228 ICEDMRFLDEPLSGETNDPNKT----EYTLKIYTHDIPETYNVVRK 269


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 371 IDDDVSNKDIPNNAEVEKPERSASPPEKSSNIYLSDLSETKEVVRK 416
           I +D+   D P + E   P ++    E +  IY  D+ ET  VVRK
Sbjct: 228 ICEDMRFLDEPLSGETNDPNKT----EYTLKIYTHDIPETYNVVRK 269


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 348 GSQTSSPHRDLSEHKTLFPSAK 369
           G Q+  PH+ L  H++  P A+
Sbjct: 804 GDQSQPPHQQLHHHQSTHPQAQ 825


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 610 PHPGFEGKEEKREIGDELTSFYN 632
           P PG     E + + D+L S YN
Sbjct: 11  PFPGASANSEAKRLYDDLLSNYN 33


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 574 FLRAEGRYRYVRDSDGLVQWEYPAVATTD 602
           +LR +G+  Y+ +SD +    YP+V   D
Sbjct: 293 YLRLKGQMLYIPESDLVTFLCYPSVMNLD 321


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 574 FLRAEGRYRYVRDSDGLVQWEYPAVATTD 602
           +LR +G+  Y+ +SD +    YP+V   D
Sbjct: 293 YLRLKGQMLYIPESDLVTFLCYPSVMNLD 321


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,542
Number of Sequences: 429
Number of extensions: 6785
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 734
length of database: 140,377
effective HSP length: 63
effective length of query: 671
effective length of database: 113,350
effective search space: 76057850
effective search space used: 76057850
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 47 (23.0 bits)