Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001330-TA|BGIBMGA001330-PA|IPR001202|WW/Rsp5/WWP
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 41 0.003
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 41 0.003
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 41 0.003
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 39 0.014
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 38 0.018
At2g41020.2 68415.m05066 WW domain-containing protein contains P... 38 0.024
At2g41020.1 68415.m05067 WW domain-containing protein contains P... 38 0.024
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 36 0.096
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 36 0.096
At3g13225.1 68416.m01660 WW domain-containing protein contains P... 35 0.22
At4g18600.1 68417.m02755 expressed protein 32 1.2
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot... 32 1.6
At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TO... 31 2.7
At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TO... 31 2.7
At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TO... 31 2.7
At4g20400.1 68417.m02978 transcription factor jumonji (jmj) fami... 30 4.8
At3g62590.1 68416.m07031 lipase class 3 family protein contains ... 30 6.3
At5g18240.5 68418.m02144 myb family transcription factor contain... 29 8.4
At5g18240.4 68418.m02143 myb family transcription factor contain... 29 8.4
At5g18240.3 68418.m02142 myb family transcription factor contain... 29 8.4
At5g18240.2 68418.m02141 myb family transcription factor contain... 29 8.4
At5g18240.1 68418.m02140 myb family transcription factor contain... 29 8.4
At2g47310.1 68415.m05906 flowering time control protein-related ... 29 8.4
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical
to RNA helicase DRH1 GB:BAA28347 GI:3149952
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 619
Score = 41.1 bits (92), Expect = 0.003
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 47 AARSGIHRAPISHC---PWSACYDEASGFTYYWNQQTNAVTWEAP 88
AA S + AP H PW D+ +G+ Y+WN +TN +E P
Sbjct: 5 AAASVVRYAPEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical
to RNA helicase DRH1 GB:BAA28347 GI:3149952
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 619
Score = 41.1 bits (92), Expect = 0.003
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 47 AARSGIHRAPISHC---PWSACYDEASGFTYYWNQQTNAVTWEAP 88
AA S + AP H PW D+ +G+ Y+WN +TN +E P
Sbjct: 5 AAASVVRYAPEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical
to RNA helicase DRH1 GB:BAA28347 GI:3149952
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 618
Score = 41.1 bits (92), Expect = 0.003
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 47 AARSGIHRAPISHC---PWSACYDEASGFTYYWNQQTNAVTWEAP 88
AA S + AP H PW D+ +G+ Y+WN +TN +E P
Sbjct: 5 AAASVVRYAPEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 38.7 bits (86), Expect = 0.014
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 38 APIKTQPSEAARSGIHRAPISHCPWSACYDEASGFTYYWNQQTNAVTWE----APPEYLL 93
A + P+ A P PW D ++G YYWN +TN +E PP
Sbjct: 2 ATTEDTPASAGPRYAPEDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPSAPPPHSAT 61
Query: 94 ALKIAQQQLNMGGSSQVSAAEWQMYQQV-LAEQQTKSQTQP 133
K+A Q+ + S Q A+ + + V QQ Q QP
Sbjct: 62 TPKLA--QIPVPSSGQGHQAQHEQAKPVGHVSQQHGFQQQP 100
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 38.3 bits (85), Expect = 0.018
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 61 PWSACYDEASGFTYYWNQQTNAVTWEAP----PEYLLALKIAQQ-QLNMGGSS 108
PW D +G+ Y+WN +TN +E P P L A+ ++ Q N SS
Sbjct: 20 PWKGLVDSRTGYLYFWNPETNVTQYERPASSAPPKLAAIPVSSSVQTNQQSSS 72
>At2g41020.2 68415.m05066 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 382
Score = 37.9 bits (84), Expect = 0.024
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 62 WSACYDEASGFTYYWNQQTNAVTWEAPPEYLLALKIAQQQLN 103
W D ASG TYY+NQ T WE P E A A L+
Sbjct: 198 WVDAKDPASGATYYYNQHTGTCQWERPVELSYATSSAPPVLS 239
Score = 34.7 bits (76), Expect = 0.22
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 62 WSACYDEASGFTYYWNQQTNAVTWEAP 88
W +DEASG Y++N +T+ WE P
Sbjct: 243 WIETFDEASGHKYFYNTRTHVSQWEPP 269
>At2g41020.1 68415.m05067 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 463
Score = 37.9 bits (84), Expect = 0.024
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 62 WSACYDEASGFTYYWNQQTNAVTWEAPPEYLLALKIAQQQLN 103
W D ASG TYY+NQ T WE P E A A L+
Sbjct: 198 WVDAKDPASGATYYYNQHTGTCQWERPVELSYATSSAPPVLS 239
Score = 34.7 bits (76), Expect = 0.22
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 62 WSACYDEASGFTYYWNQQTNAVTWEAP 88
W +DEASG Y++N +T+ WE P
Sbjct: 243 WIETFDEASGHKYFYNTRTHVSQWEPP 269
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 35.9 bits (79), Expect = 0.096
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 60 CPWSACYDEASGFTYYWNQQTNAVTWEAPPEYLLALKIAQQQLNMGGSSQVSAAEWQMYQ 119
C W+ + GF YY+N T WE P E ++ + Q+Q + ++ Q+
Sbjct: 595 CTWTE-HTSPDGFKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKPTIQQSQTQLQP 653
Query: 120 QVLAEQQTKSQTQ 132
QQ + Q Q
Sbjct: 654 LQQQPQQVQQQYQ 666
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 35.9 bits (79), Expect = 0.096
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 60 CPWSACYDEASGFTYYWNQQTNAVTWEAPPEYLLALKIAQQQLNMGGSSQVSAAEWQMYQ 119
C W+ + GF YY+N T WE P E ++ + Q+Q + ++ Q+
Sbjct: 353 CTWTE-HTSPDGFKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKPTIQQSQTQLQP 411
Query: 120 QVLAEQQTKSQTQ 132
QQ + Q Q
Sbjct: 412 LQQQPQQVQQQYQ 424
>At3g13225.1 68416.m01660 WW domain-containing protein contains Pfam
profile PF00397: WW domain
Length = 863
Score = 34.7 bits (76), Expect = 0.22
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 41 KTQPSEAARSGI---HRAPIS-HCPWSACYDEASGFTYYWNQQTNAVTWEAP 88
+T PS A + H+AP W E S YYWN +T +WE P
Sbjct: 133 QTVPSVQASGSVSLEHQAPTDVTSQWKMILHEESNQYYYWNTETGETSWELP 184
>At4g18600.1 68417.m02755 expressed protein
Length = 1907
Score = 32.3 bits (70), Expect = 1.2
Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 6/148 (4%)
Query: 304 EEAIDNTNPPNDSIDDLLSEIEKTELPKVXXXXXXXXXXGNSKPGSQTSSPHRDLSEHKT 363
+E I + P + + L TE P G PGS+ + H
Sbjct: 1306 DEKIPGSEAPVSTTETGLHNETFTEEPVATDISLNEAVFGEIIPGSEAPGSATETGLHNK 1365
Query: 364 LFPSAKNIDDDVSNKDIPNNAEVEKPERSASPPEKSSNIYLSDLSETKEVVRKKLRISNS 423
FP K D+S K+ + ++ E S+S E S + + + +E + L + +
Sbjct: 1366 TFPE-KPFATDLSLKEAVFDEKIPGSEASSSTTETSPH----NKTFPRETITTDLSSTEA 1420
Query: 424 VLPDR-SKTETPSYTTKYSQFIEGFSSE 450
V ++ + + PS+TT+ + F E
Sbjct: 1421 VFDEKITGSGVPSFTTETGSHNKCFPEE 1448
>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487; contains
prenyl group binding site (CAAX box) Prosite:PS00294
Length = 769
Score = 31.9 bits (69), Expect = 1.6
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 346 KPGSQTSSPHRDLSEHKTLFPSAKNIDDDVS--NKDIP---NNAEVEKPERSASPPEKSS 400
K G + + ++E L S +N ++ S + + P N+E+E +P +
Sbjct: 4 KRGHKKGKKSKTINEQGNLNESTENAENQTSEHSSEAPVECENSELESKMEVDAPSPIAG 63
Query: 401 NIYLSDLSETKEVVRKKLRISNSVLPDRSKT 431
++ L+D K V R K+++ S P+ ++T
Sbjct: 64 SVDLADNIAAKSVARVKVKLKTSKAPEPNET 94
>At4g18020.3 68417.m02683 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 487
Score = 31.1 bits (67), Expect = 2.7
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 344 NSKPGSQTSSPHRDLSEHKTLFPSAKNIDDD--VSNKDIPNNAEVEKPERSASPPEKSSN 401
NS H+D+ E K++ + + +DDD V ++ ++ + E+ E EK+ +
Sbjct: 208 NSSTEKDNMEDHQDIGESKSVDTTNRKLDDDKVVVKEERGDSEKEEEGETGDLISEKTDS 267
Query: 402 IYLSDLSETKEVVRKKLRISN--SVLPDRSKTE-TPSYTTKYSQFIE 445
+ + + + + K I N R K + TP K+ Q +E
Sbjct: 268 VDIHKKEDETKPINKSSGIKNVSGNKTSRKKVDWTPELHKKFVQAVE 314
>At4g18020.2 68417.m02682 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 31.1 bits (67), Expect = 2.7
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 344 NSKPGSQTSSPHRDLSEHKTLFPSAKNIDDD--VSNKDIPNNAEVEKPERSASPPEKSSN 401
NS H+D+ E K++ + + +DDD V ++ ++ + E+ E EK+ +
Sbjct: 208 NSSTEKDNMEDHQDIGESKSVDTTNRKLDDDKVVVKEERGDSEKEEEGETGDLISEKTDS 267
Query: 402 IYLSDLSETKEVVRKKLRISN--SVLPDRSKTE-TPSYTTKYSQFIE 445
+ + + + + K I N R K + TP K+ Q +E
Sbjct: 268 VDIHKKEDETKPINKSSGIKNVSGNKTSRKKVDWTPELHKKFVQAVE 314
>At4g18020.1 68417.m02681 pseudo-response regulator 2 (APRR2) (TOC2)
identical to pseudo-response regulator 2 GI:7576356 from
[Arabidopsis thaliana]
Length = 535
Score = 31.1 bits (67), Expect = 2.7
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 344 NSKPGSQTSSPHRDLSEHKTLFPSAKNIDDD--VSNKDIPNNAEVEKPERSASPPEKSSN 401
NS H+D+ E K++ + + +DDD V ++ ++ + E+ E EK+ +
Sbjct: 208 NSSTEKDNMEDHQDIGESKSVDTTNRKLDDDKVVVKEERGDSEKEEEGETGDLISEKTDS 267
Query: 402 IYLSDLSETKEVVRKKLRISN--SVLPDRSKTE-TPSYTTKYSQFIE 445
+ + + + + K I N R K + TP K+ Q +E
Sbjct: 268 VDIHKKEDETKPINKSSGIKNVSGNKTSRKKVDWTPELHKKFVQAVE 314
>At4g20400.1 68417.m02978 transcription factor jumonji (jmj)
family protein / zinc finger (C5HC2 type) family
protein contains Pfam domains, PF02375: jmjN domain,
PF02373: jmjC domain and PF02928: C5HC2 zinc finger
Length = 954
Score = 30.3 bits (65), Expect = 4.8
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 1 MSKINPLAGLIGNYDDSEEEG--DDTSMQSVAVIPSGVKAPIKTQPSEAARSGIHRAPIS 58
M ++ LA + +DSE++ ++S++ + PS K + PSEA R + API
Sbjct: 1 MDQLASLAESVAMEEDSEKQSIKGESSLEPDST-PSSPKITARWNPSEACRPLVDDAPIF 59
Query: 59 HCPWSACYDEASGF 72
+ P + +D+ G+
Sbjct: 60 Y-PTNEDFDDPLGY 72
>At3g62590.1 68416.m07031 lipase class 3 family protein contains
Pfam profile PF01764: Lipase
Length = 649
Score = 29.9 bits (64), Expect = 6.3
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 16 DSEEEGDDTSMQSVAVIPSGVKAPIKTQPSEAARSGIHRAPISHCPWSACYDEASGFTYY 75
D+EE + SV + + K +K ++ +S +R+P C W C D+ SG ++
Sbjct: 263 DNEEASLLATADSVTAVVAA-KEEVKQAVADDLKS--NRSP--PCEWFVCDDDKSGTRFF 317
Query: 76 WNQQTNAV-TWEAPPEYLLALKIAQQQLNMGGSSQVSAAEWQMYQQVLAE 124
+ Q ++++ +W+A LL + + L++ + A +Y+Q+L E
Sbjct: 318 FIQGSDSLASWQA---NLLFEPVPFEDLDVLVHRGIYEAAKGIYEQMLPE 364
>At5g18240.5 68418.m02144 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 400
Score = 29.5 bits (63), Expect = 8.4
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 292 PPELQEIIEDKHEEAIDNTNPPNDSIDDLLSEIEKTE-LPKV 332
P ELQ + H + + T PPN S+D L+ E T+ PK+
Sbjct: 227 PKELQNL----HHQQMQKTYPPNSSLDSCLTSSEGTQKAPKM 264
>At5g18240.4 68418.m02143 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 402
Score = 29.5 bits (63), Expect = 8.4
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 292 PPELQEIIEDKHEEAIDNTNPPNDSIDDLLSEIEKTE-LPKV 332
P ELQ + H + + T PPN S+D L+ E T+ PK+
Sbjct: 229 PKELQNL----HHQQMQKTYPPNSSLDSCLTSSEGTQKAPKM 266
>At5g18240.3 68418.m02142 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 396
Score = 29.5 bits (63), Expect = 8.4
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 292 PPELQEIIEDKHEEAIDNTNPPNDSIDDLLSEIEKTE-LPKV 332
P ELQ + H + + T PPN S+D L+ E T+ PK+
Sbjct: 223 PKELQNL----HHQQMQKTYPPNSSLDSCLTSSEGTQKAPKM 260
>At5g18240.2 68418.m02141 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 396
Score = 29.5 bits (63), Expect = 8.4
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 292 PPELQEIIEDKHEEAIDNTNPPNDSIDDLLSEIEKTE-LPKV 332
P ELQ + H + + T PPN S+D L+ E T+ PK+
Sbjct: 223 PKELQNL----HHQQMQKTYPPNSSLDSCLTSSEGTQKAPKM 260
>At5g18240.1 68418.m02140 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 402
Score = 29.5 bits (63), Expect = 8.4
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 292 PPELQEIIEDKHEEAIDNTNPPNDSIDDLLSEIEKTE-LPKV 332
P ELQ + H + + T PPN S+D L+ E T+ PK+
Sbjct: 229 PKELQNL----HHQQMQKTYPPNSSLDSCLTSSEGTQKAPKM 266
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 29.5 bits (63), Expect = 8.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 58 SHCPWSACYDEASGFTYYWNQQTNAVTWEAPPEYLLALKIAQQQLNM 104
S C WS + +G YY++ T TWE P EY + + ++Q +
Sbjct: 403 SECDWSE-HTCPNGNKYYFHCITCESTWEKPDEYSMYERWLKEQTRL 448
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.308 0.127 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,448,691
Number of Sequences: 28952
Number of extensions: 538398
Number of successful extensions: 1262
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1237
Number of HSP's gapped (non-prelim): 40
length of query: 734
length of database: 12,070,560
effective HSP length: 86
effective length of query: 648
effective length of database: 9,580,688
effective search space: 6208285824
effective search space used: 6208285824
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 63 (29.5 bits)
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