Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001329-TA|BGIBMGA001329-PA|undefined
         (70 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4)                     32   0.056
SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                31   0.13 
SB_14232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   0.91 
SB_4324| Best HMM Match : IQ (HMM E-Value=0.0059)                      27   2.8  
SB_20042| Best HMM Match : RYDR_ITPR (HMM E-Value=0)                   25   6.4  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   25   8.5  
SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  

>SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4)
          Length = 450

 Score = 32.3 bits (70), Expect = 0.056
 Identities = 13/36 (36%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 15 LIGMAILEEVDEEISVIKKNKLWVRKWIDRRDKLGA 50
          LI M +L++ +  +++  + ++W R+WI RR++LGA
Sbjct: 15 LILMQLLDDDNPPVTI--ERRVWTREWIKRREELGA 48


>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1814

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 10   DKLIKLIGMAILEEVDEEISVIKKNKLWVRKWIDRRDKL 48
            D+ ++   MA +EE++  +S IKKN+L   KW    DKL
Sbjct: 1451 DEPLEACSMADMEELENFLSTIKKNQL---KWCGNSDKL 1486


>SB_14232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 11/34 (32%), Positives = 24/34 (70%), Gaps = 2/34 (5%)

Query: 15 LIGMAILEEVDEEISVIKKNKLWVRKWIDRRDKL 48
          LI M +L++ +  +++  + ++W R+WI RR++L
Sbjct: 15 LILMQLLDDDNPPVTI--ERRVWTREWIKRREEL 46


>SB_4324| Best HMM Match : IQ (HMM E-Value=0.0059)
          Length = 110

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 20 ILEEVDEEISVIKKNKLWVRKWIDRR 45
          I EE  EEI  IKK +  +R W+ RR
Sbjct: 12 IKEEESEEIKSIKKVQSLIRGWLCRR 37


>SB_20042| Best HMM Match : RYDR_ITPR (HMM E-Value=0)
          Length = 340

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 20  ILEEVDEEISVIKKNKLWVRKWIDRRDKLGAT 51
           I  ++DE   +++K++LWV K   ++D +G+T
Sbjct: 91  IRSDLDELRLLVEKSELWVYK--SKKDSIGST 120


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/35 (25%), Positives = 20/35 (57%)

Query: 16   IGMAILEEVDEEISVIKKNKLWVRKWIDRRDKLGA 50
            +G  + + +D  +   KKN+ ++R   D+ + +GA
Sbjct: 1206 VGYPLTDAIDSRVKCAKKNQKYLRGNNDKEEVVGA 1240


>SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 37  WVRKWIDRRDKLG 49
           WV KW+D  DK G
Sbjct: 429 WVSKWVDYSDKYG 441


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,856
Number of Sequences: 59808
Number of extensions: 45676
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 7
length of query: 70
length of database: 16,821,457
effective HSP length: 49
effective length of query: 21
effective length of database: 13,890,865
effective search space: 291708165
effective search space used: 291708165
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)