GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001329-TA|BGIBMGA001329-PA|undefined
         (70 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    27   0.23 
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    24   2.8  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 27.5 bits (58), Expect = 0.23
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 16  IGMAILEEVDEEISVIKKNKLWVRKWIDRR 45
           +G+A  E VD  +S IKKNK  V +W+  R
Sbjct: 384 VGLA-RESVDLLVSKIKKNKKCVNRWLRTR 412


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 6   RNRVDKLIKLIGMAILEEVDEEISVIKKNKLWVRKW 41
           R+  D+L+K        E  EE+S +KK   +  KW
Sbjct: 280 RDHWDQLLKPWKCMTYSEAIEELSAVKKTWKYPPKW 315


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,778
Number of Sequences: 5004
Number of extensions: 6707
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 70
length of database: 2,362,478
effective HSP length: 50
effective length of query: 20
effective length of database: 2,112,278
effective search space: 42245560
effective search space used: 42245560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)