GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001329-TA|BGIBMGA001329-PA|undefined
         (70 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739...    26   3.2  
05_07_0334 - 29358823-29360247                                         25   5.7  
01_01_0531 - 3892738-3892757,3893083-3893111,3893330-3893355,389...    25   5.7  
05_06_0091 + 25462802-25462953,25464937-25465018                       25   9.9  
03_05_0686 + 26753253-26753389,26753618-26753745,26754370-267551...    25   9.9  

>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
            27774929-27775110,27775191-27775368,27775453-27775605,
            27775993-27776232,27776369-27776449,27776485-27776730,
            27777151-27777240,27777536-27777778,27778365-27778529,
            27779017-27779080,27779162-27779286,27779383-27779476,
            27779647-27779714,27779798-27779989,27780618-27780752,
            27780847-27780934,27781014-27781107,27781484-27781547,
            27781657-27781708,27781911-27782014,27782099-27782158,
            27782687-27782770,27782892-27783125,27783442-27783864,
            27784675-27784736,27784867-27785521
          Length = 1700

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 7    NRVDKLIKLIGMAILEEVDEEISVIKKNKLWVRKW 41
            +R+ K +++IG  I E VD+     K++++ +R W
Sbjct: 1511 SRIRKYLQIIGNKIGEIVDQHSESYKQSRMAMRLW 1545


>05_07_0334 - 29358823-29360247
          Length = 474

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 5   QRNRVDKLIKLIGMAILEEVDEEISVIKKNKLWVRKW 41
           +R+RVD+ +++IG  +L     +  V+++    V  W
Sbjct: 381 RRSRVDRSVEMIGGLLLGGAKHKQQVVRERAALVEDW 417


>01_01_0531 -
           3892738-3892757,3893083-3893111,3893330-3893355,
           3893639-3893767,3893884-3894151,3894355-3894694,
           3894925-3895045,3895135-3895230,3895604-3895777,
           3895902-3896068,3896675-3896840,3896915-3897053,
           3897135-3897327,3897442-3897524,3897850-3897881
          Length = 660

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 5   QRNRVDKLIKLIGMAILEEVDEE 27
           Q + VDK +K +  AIL+EVD+E
Sbjct: 409 QTDSVDKELKSLKDAILQEVDKE 431


>05_06_0091 + 25462802-25462953,25464937-25465018
          Length = 77

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 16 IGMAIL---EEVDEEISVIKKNKLWVRKWIDRRDKLGA 50
          +G A+L    +V +  S+ ++N   +RKW++      A
Sbjct: 13 VGTAVLLLRSDVKQSASIFRRNVRHIRKWLEEESAAAA 50


>03_05_0686 +
           26753253-26753389,26753618-26753745,26754370-26755196,
           26756016-26756690
          Length = 588

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/11 (72%), Positives = 11/11 (100%)

Query: 39  RKWIDRRDKLG 49
           ++WIDRR+KLG
Sbjct: 95  KEWIDRREKLG 105


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,144
Number of Sequences: 37544
Number of extensions: 39977
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 5
length of query: 70
length of database: 14,793,348
effective HSP length: 50
effective length of query: 20
effective length of database: 12,916,148
effective search space: 258322960
effective search space used: 258322960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)