GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001329-TA|BGIBMGA001329-PA|undefined
         (70 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   0.62 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   0.62 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   0.62 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   0.62 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   0.62 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   0.62 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   0.62 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   0.62 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   0.82 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   1.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   4.4  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 0.62
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 1  MNRPQRNRVDKLIKLIGMAILE--EVDEEISVIKKNKLWVRKWID 43
          + RP  N  + L    G+ + +  +VDE+  ++  N     +W+D
Sbjct: 1  LERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVD 45


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 0.62
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 1  MNRPQRNRVDKLIKLIGMAILE--EVDEEISVIKKNKLWVRKWID 43
          + RP  N  + L    G+ + +  +VDE+  ++  N     +W+D
Sbjct: 1  LERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVD 45


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 0.62
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 1  MNRPQRNRVDKLIKLIGMAILE--EVDEEISVIKKNKLWVRKWID 43
          + RP  N  + L    G+ + +  +VDE+  ++  N     +W+D
Sbjct: 1  LERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVD 45


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 0.62
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 1  MNRPQRNRVDKLIKLIGMAILE--EVDEEISVIKKNKLWVRKWID 43
          + RP  N  + L    G+ + +  +VDE+  ++  N     +W+D
Sbjct: 1  LERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVD 45


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 0.62
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 1  MNRPQRNRVDKLIKLIGMAILE--EVDEEISVIKKNKLWVRKWID 43
          + RP  N  + L    G+ + +  +VDE+  ++  N     +W+D
Sbjct: 1  LERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVD 45


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 0.62
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 1  MNRPQRNRVDKLIKLIGMAILE--EVDEEISVIKKNKLWVRKWID 43
          + RP  N  + L    G+ + +  +VDE+  ++  N     +W+D
Sbjct: 1  LERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVD 45


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 0.62
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 1   MNRPQRNRVDKLIKLIGMAILE--EVDEEISVIKKNKLWVRKWID 43
           + RP  N  + L    G+ + +  +VDE+  ++  N     +W+D
Sbjct: 69  LERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVD 113


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 0.62
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 1   MNRPQRNRVDKLIKLIGMAILE--EVDEEISVIKKNKLWVRKWID 43
           + RP  N  + L    G+ + +  +VDE+  ++  N     +W+D
Sbjct: 69  LERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVD 113


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 0.82
 Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 1   MNRPQR-NRVDKLIKLIGMAILEEVDEEISVIKKNKLWVRKWIDRRDKL 48
           MNR  R NR+D++ ++  M  ++ +D   ++ + +++     IDR D++
Sbjct: 375 MNRVNRVNRMDRMDRIDRMDRMDRMDTMDTMDRIDRMDRMDRIDRIDRM 423



 Score = 20.6 bits (41), Expect = 1.9
 Identities = 10/42 (23%), Positives = 23/42 (54%)

Query: 7   NRVDKLIKLIGMAILEEVDEEISVIKKNKLWVRKWIDRRDKL 48
           +R DK+  +  M  ++ VD   ++ + +K+     +DR D++
Sbjct: 433 DRTDKMSSMDRMDRMDRVDRMDTMDRTDKMSSMDRMDRMDRV 474



 Score = 19.4 bits (38), Expect = 4.4
 Identities = 10/45 (22%), Positives = 24/45 (53%)

Query: 7   NRVDKLIKLIGMAILEEVDEEISVIKKNKLWVRKWIDRRDKLGAT 51
           +R+D++ ++  M  ++ +D      K +++     IDR D++  T
Sbjct: 484 DRMDRMDRMDRMDRMDRMDTMDRTDKMSRIDRMDKIDRMDRMDRT 528



 Score = 19.0 bits (37), Expect = 5.8
 Identities = 8/45 (17%), Positives = 23/45 (51%)

Query: 7   NRVDKLIKLIGMAILEEVDEEISVIKKNKLWVRKWIDRRDKLGAT 51
           +R+D++ ++  M  ++ +D    +   +++     +DR D +  T
Sbjct: 415 DRIDRIDRMHTMDTMDTMDRTDKMSSMDRMDRMDRVDRMDTMDRT 459


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 25  DEEISVIKKNKLWVRKWIDRRD 46
           D +I++ K+ K+W+  +   RD
Sbjct: 385 DTKITIPKEMKIWIPAFAIHRD 406


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.4 bits (38), Expect = 4.4
 Identities = 5/11 (45%), Positives = 9/11 (81%)

Query: 38  VRKWIDRRDKL 48
           + +WIDRR ++
Sbjct: 440 IAQWIDRRSRI 450


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,025
Number of Sequences: 429
Number of extensions: 512
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 70
length of database: 140,377
effective HSP length: 45
effective length of query: 25
effective length of database: 121,072
effective search space:  3026800
effective search space used:  3026800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.5 bits)
S2: 36 (18.6 bits)