GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001329-TA|BGIBMGA001329-PA|undefined
         (70 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10330.1 68418.m01198 histidinol-phosphate aminotransferase, ...    26   3.5  
At1g71920.1 68414.m08314 histidinol-phosphate aminotransferase, ...    26   3.5  
At5g05680.1 68418.m00625 nuclear pore complex protein-related co...    25   8.1  
At2g29630.2 68415.m03600 thiamine biosynthesis family protein / ...    25   8.1  
At2g29630.1 68415.m03599 thiamine biosynthesis family protein / ...    25   8.1  

>At5g10330.1 68418.m01198 histidinol-phosphate aminotransferase,
           putative similar to histidinol-phosphate
           aminotransferase GB:CAA70403 [GI:335562] from [Nicotiana
           tabacum], Nicotiana plumbaginifolia [GI:12055099]
          Length = 417

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 10  DKLIKLIGMAILEEVDE---EISVIKKNKLWVRKW 41
           D L+K++ M IL  +DE   E S ++    WV+K+
Sbjct: 232 DDLLKILEMPILVVLDEAYIEFSGVESRMKWVKKY 266


>At1g71920.1 68414.m08314 histidinol-phosphate aminotransferase,
           putative similar to histidinol-phosphate
           aminotransferase GB:CAA70403 [GI:335562] from [Nicotiana
           tabacum], Nicotiana plumbaginifolia [GI:12055099]
          Length = 415

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 10  DKLIKLIGMAILEEVDE---EISVIKKNKLWVRKW 41
           D L+K++ M IL  +DE   E S ++    WV+K+
Sbjct: 230 DDLLKILEMPILVVLDEAYIEFSGVESRMKWVKKY 264


>At5g05680.1 68418.m00625 nuclear pore complex protein-related
           contains weak similarity to Nuclear pore complex protein
           Nup88 (Nucleoporin Nup88) (88 kDa nuclear pore complex
           protein) (Swiss-Prot:Q99567) [Homo sapiens]
          Length = 810

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 21  LEEVDEEISVIKKNKLWVRKWIDR 44
           L E +E+IS ++KN+ ++ K ID+
Sbjct: 660 LAEANEKISKVEKNQSFLEKRIDK 683


>At2g29630.2 68415.m03600 thiamine biosynthesis family protein /
           thiC family protein contains Pfam profile: PF01964 ThiC
           family
          Length = 644

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/11 (72%), Positives = 11/11 (100%)

Query: 39  RKWIDRRDKLG 49
           ++WIDRR+KLG
Sbjct: 149 KEWIDRREKLG 159


>At2g29630.1 68415.m03599 thiamine biosynthesis family protein /
           thiC family protein contains Pfam profile: PF01964 ThiC
           family
          Length = 644

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/11 (72%), Positives = 11/11 (100%)

Query: 39  RKWIDRRDKLG 49
           ++WIDRR+KLG
Sbjct: 149 KEWIDRREKLG 159


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,280,236
Number of Sequences: 28952
Number of extensions: 36263
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 5
length of query: 70
length of database: 12,070,560
effective HSP length: 50
effective length of query: 20
effective length of database: 10,622,960
effective search space: 212459200
effective search space used: 212459200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)