Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001328-TA|BGIBMGA001328-PA|IPR002557|Chitin binding
Peritrophin-A
         (456 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   1.1  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.9  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    24   1.9  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          24   1.9  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     24   2.6  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    23   4.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   4.5  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 239 QVSSEDERTPKKNKSFGNKLNDFKTDNDKKFR 270
           +V +++E    K++SFG K     +D +  F+
Sbjct: 47  KVEADEEAPVLKSRSFGRKRKSISSDEENSFQ 78


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 342 PPKEGNITNSTALPTKSPKTG-----KSPFSTARRTTIKAEDATPKP 383
           PP   +   S  + T +PK G     KS  +T R TT+   +A P P
Sbjct: 415 PPSTPSADGSKPVQT-TPKPGQWVPEKSTSTTQRTTTVSTTEAPPAP 460


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 358 SPKTGKSPFSTARRTTIKAEDATPKPRNVEYN----ISSYYVPDYVFPLDGPHPGYESDD 413
           +PKT  +  S + ++T     A+PK     YN     S   V D     D     Y+ +D
Sbjct: 150 TPKTSPNEASMSPQSTSSNNSASPKACQFLYNQFPGSSQVVVKDETCQYD-TESSYQFND 208

Query: 414 AQTSFQVQVSR--PGRSSYGENPKC 436
            Q +F  Q ++     ++Y E   C
Sbjct: 209 PQFNFNYQYNQAYSNYNNYQEGFSC 233


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 358 SPKTGKSPFSTARRTTIKAEDATPKPRNVEYN----ISSYYVPDYVFPLDGPHPGYESDD 413
           +PKT  +  S + ++T     A+PK     YN     S   V D     D     Y+ +D
Sbjct: 170 TPKTSPNEASMSPQSTSSNNSASPKACQFLYNQFPGSSQVVVKDETCQYD-TESSYQFND 228

Query: 414 AQTSFQVQVSR--PGRSSYGENPKC 436
            Q +F  Q ++     ++Y E   C
Sbjct: 229 PQFNFNYQYNQAYSNYNNYQEGFSC 253


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 138 NIDSLAGAASQEPGPTIRPQPESRDTSLKN 167
           N  +LA A +   GP+  P   S +T L+N
Sbjct: 267 NYSTLASAVASANGPSQDPSISSTETLLRN 296


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 338 FGLLPPKEGNITNSTALPTKSP 359
           F +  P+E + TNST + T++P
Sbjct: 414 FQISIPEEASPTNSTTITTQTP 435


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 361 TGKSPFSTARRTTIKAEDATPKP--RNVEYNISS----YYVPDYV---FPLDGPHPGYES 411
           T     ST  RTT+K   A+P P  R    ++S     Y  PD++    P   P P Y +
Sbjct: 247 TATVQLSTCTRTTLKNNRASPYPMQRPKSASLSPPPHVYNPPDHIQQATPYSAPGPTYST 306


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.132    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,247
Number of Sequences: 317
Number of extensions: 5273
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 7
length of query: 456
length of database: 114,650
effective HSP length: 59
effective length of query: 397
effective length of database: 95,947
effective search space: 38090959
effective search space used: 38090959
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)