GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001328-TA|BGIBMGA001328-PA|IPR002557|Chitin binding
Peritrophin-A
         (456 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41510-8|AAK39385.1|  493|Caenorhabditis elegans Hypothetical pr...    32   0.96 
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    31   2.2  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    31   2.2  
U56965-3|AAB52664.2|  467|Caenorhabditis elegans Hypothetical pr...    30   2.9  
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    30   3.9  
Z37983-2|CAA86055.1|  585|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...    29   5.1  
Z82092-1|CAB05010.1|  196|Caenorhabditis elegans Hypothetical pr...    29   6.8  
Z81094-6|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    29   9.0  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    29   9.0  
AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical ...    29   9.0  
AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical ...    29   9.0  
AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical...    29   9.0  

>U41510-8|AAK39385.1|  493|Caenorhabditis elegans Hypothetical
           protein ZC449.5 protein.
          Length = 493

 Score = 31.9 bits (69), Expect = 0.96
 Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 10/166 (6%)

Query: 206 DPNSPDSIKTAITQSEIIDLNKHLPEGQVSSEGQVSS---EDERTPKKNKSFGNKLNDF- 261
           +P++ +S ++  T SE    ++  P  + S+E        ED++  K  K    K  D  
Sbjct: 263 EPSTEESSESPET-SEEPQSSESTPTSEESTEQSTEKPKKEDKKDKKDKKDKKQKKEDSE 321

Query: 262 KTDNDKKFREGTRFDSVXXXXXXXXXXXXGDSGVKSKVPKPEQVLLPPKKDYSQSPLDST 321
           + D+DKK +  +  DS              ++  +  V   ++ L     D  +   D  
Sbjct: 322 EDDDDKKSKSSSSSDSKTDEKSTSESDSSSEASSEKTVEGTKKTLFSGPPDSDEDDDDEG 381

Query: 322 TMGPPIYYEWKWAVPAFGLLPPKEGNITNSTALPTKSPKTGKSPFS 367
                 ++  K A  A     P E + T + A+ +K  K  +S F+
Sbjct: 382 AGADEAFFSEKQATEA-----PAELSRTTTMAVKSKKMKKSESGFN 422


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 114 SAKQNYRPPTSWSTRKRRPNVQINNIDSLAGAASQEPGPTIRPQPESRDTSLKNKGNQPE 173
           ++ QN   P   ST    PN   N   +++   S+ PG T R  P+S   +   KG  P+
Sbjct: 34  NSNQNNNNPHHTSTTDSVPNSTANVSSAISFEYSEPPGNTTRTTPDSGLGTDDQKGT-PQ 92

Query: 174 RELMPP 179
           +   PP
Sbjct: 93  QTRAPP 98


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 114 SAKQNYRPPTSWSTRKRRPNVQINNIDSLAGAASQEPGPTIRPQPESRDTSLKNKGNQPE 173
           ++ QN   P   ST    PN   N   +++   S+ PG T R  P+S   +   KG  P+
Sbjct: 34  NSNQNNNNPHHTSTTDSVPNSTANVSSAISFEYSEPPGNTTRTTPDSGLGTDDQKGT-PQ 92

Query: 174 RELMPP 179
           +   PP
Sbjct: 93  QTRAPP 98


>U56965-3|AAB52664.2|  467|Caenorhabditis elegans Hypothetical
           protein C15H9.4 protein.
          Length = 467

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 347 NITNSTALPTKSPKTGKSPFSTARRTTIKAE---DATPKPRNVEYNISSYYVPDYVFPLD 403
           N+ ++    T +PKTG+S F T R++    E   +A  K R  + N SS   P+      
Sbjct: 155 NVNSTQNGTTGAPKTGQSTFFTTRKSADTDEVESNAVHKNRGAKRN-SSTLPPNLSLTSP 213

Query: 404 GPHPGYESDDAQTSFQVQVSRPGRSS 429
            P   Y+ +D+        SRPG ++
Sbjct: 214 DPLSAYKEEDSSD----PESRPGSAA 235


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 339 GLLPPKEGNITNSTALPTKSPKTGKSPFSTARRTTIKAEDATPK 382
           G++ PK+G +T +      +  TG+ P ++A  TT  A   T +
Sbjct: 425 GVIIPKKGGVTTAPTTVATTVTTGRPPMTSAVTTTTAATTTTTR 468


>Z37983-2|CAA86055.1|  585|Caenorhabditis elegans Hypothetical
           protein B0393.2 protein.
          Length = 585

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 107 DEDNILDSAKQNYRPPTSWSTRKRRPNVQINNIDSLAGAASQEPGPTIRPQPESRDTSLK 166
           D D+ +  A+ +YR P     +  +P ++ NN   +  A S  P  T RPQ      + K
Sbjct: 363 DIDSFVKLAR-HYRNPK----KNAKPMIKSNNFSHITVAGSSHPNRTQRPQRPPAAVNSK 417

Query: 167 NKG 169
           N G
Sbjct: 418 NDG 420


>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 336 PAFGLLPPKEGNITNSTALPTKSPKTGKSP-FSTARRTTIK-AEDATPKPRNVE 387
           P    +P K+ +++N+T L  K P     P +S    +T K AE   PK   +E
Sbjct: 736 PKLTPVPTKQAHLSNATKLAQKQPTASSGPAYSATVMSTAKDAEIKVPKEEPIE 789


>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 231 EGQVSSEGQVSSEDERTPKKNKSFGNKLND 260
           E + + E  + +E ER P KNKSFG+  +D
Sbjct: 385 ECRAALENVLRTESERGPSKNKSFGSHRHD 414


>Z82092-1|CAB05010.1|  196|Caenorhabditis elegans Hypothetical
           protein ZK384.1 protein.
          Length = 196

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 426 GRSSYGENPKCPQCHPAYLKPGSCEPC 452
           GR  Y E P C  C P  + PG  E C
Sbjct: 162 GRPIYKEGPPCTACPPMRICPGQKECC 188


>Z81094-6|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 127 TRKRRPNVQINNIDSLAGA--ASQEPGPTIRPQPESRDTSLKNKGNQPERELMPPLLPS 183
           TRK +   QI  I     A  ASQEP   +R   E+R ++ ++     +R   P   PS
Sbjct: 481 TRKLKEEDQIEKIRKCVDAYYASQEPPENLREDSEARRSNSRSPPRDHKRSRSPSRSPS 539


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 127 TRKRRPNVQINNIDSLAGA--ASQEPGPTIRPQPESRDTSLKNKGNQPERELMPPLLPS 183
           TRK +   QI  I     A  ASQEP   +R   E+R ++ ++     +R   P   PS
Sbjct: 481 TRKLKEEDQIEKIRKCVDAYYASQEPPENLREDSEARRSNSRSPPRDHKRSRSPSRSPS 539


>AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2a protein.
          Length = 665

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 349 TNSTALPTKSPKTGKSPFSTARRTTIKAEDATPKPRNVEYNISSYYVPDYVFPLDGPHPG 408
           T +T   T+ P T  SP +T   TT  +   T  P   E           + P D P+  
Sbjct: 167 TTTTTTTTEEPTTTTSPIATT--TTSTSTTTTETPTTSEATTHEPTASTELPPPDAPNDY 224

Query: 409 YESDDAQ 415
            +S++AQ
Sbjct: 225 IDSEEAQ 231


>AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2b protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 349 TNSTALPTKSPKTGKSPFSTARRTTIKAEDATPKPRNVEYNISSYYVPDYVFPLDGPHPG 408
           T +T   T+ P T  SP +T   TT  +   T  P   E           + P D P+  
Sbjct: 117 TTTTTTTTEEPTTTTSPIATT--TTSTSTTTTETPTTSEATTHEPTASTELPPPDAPNDY 174

Query: 409 YESDDAQ 415
            +S++AQ
Sbjct: 175 IDSEEAQ 181


>AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical
           protein Y54G2A.13 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 229 LPEGQVSSEGQVSSEDERTPKKNKSFGNKLN--DFKTDNDKKFREGTRFD 276
           + E + + + + S +  ++ K  K+ GNK+   + K   D+K +EG++ D
Sbjct: 549 MTEEEATKKSKKSKKSSKSKKSEKAKGNKIKKEEAKKSEDEKTKEGSKKD 598


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.132    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,640,762
Number of Sequences: 27539
Number of extensions: 587208
Number of successful extensions: 1431
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 17
length of query: 456
length of database: 12,573,161
effective HSP length: 84
effective length of query: 372
effective length of database: 10,259,885
effective search space: 3816677220
effective search space used: 3816677220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)