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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001328-TA|BGIBMGA001328-PA|IPR002557|Chitin binding
Peritrophin-A
         (456 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containi...    34   0.17 
At4g00650.1 68417.m00089 FRIGIDA protein identical to Swiss-Prot...    34   0.23 
At1g63530.1 68414.m07182 hypothetical protein                          33   0.30 
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains...    33   0.39 
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    33   0.52 
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    32   0.69 
At1g16500.1 68414.m01973 expressed protein                             31   1.6  
At5g28235.1 68418.m03421 Ulp1 protease family protein contains P...    31   2.1  
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains...    31   2.1  
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    30   3.7  
At1g10620.1 68414.m01204 protein kinase family protein contains ...    30   3.7  
At1g02990.2 68414.m00269 expressed protein similar to mature-par...    30   3.7  
At1g02990.1 68414.m00270 expressed protein similar to mature-par...    30   3.7  
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ...    29   4.9  
At3g23510.1 68416.m02960 cyclopropane fatty acid synthase, putat...    29   6.4  
At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing ...    29   6.4  
At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein ...    29   6.4  
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains...    29   6.4  
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99...    29   8.5  
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99...    29   8.5  
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99...    29   8.5  
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99...    29   8.5  
At3g47610.1 68416.m05183 expressed protein                             29   8.5  

>At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 749

 Score = 34.3 bits (75), Expect = 0.17
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 335 VPAFGLLPPKEGNITNSTALPTKSPKTGKSPF---STARRT-TIKAEDATPKPRNVEYNI 390
           +P+   + P   + TNS  L  K+     + F   S+ + T  ++ E+          +I
Sbjct: 299 LPSLKAVSPAVTSATNSLFLDHKNNGVIDTQFPGQSSGQATGDVQEENLVAHSNGGVSHI 358

Query: 391 SSYYVPDYVFPLDGPHPGYESDDAQTSFQVQVSRPGRSSYGENPKCPQCHPAYLKPGSCE 450
                 D+ FP DG H G++ D++   F  + +    +S G +P+    +   L+ G  +
Sbjct: 359 RKDVKGDWKFPSDGKHVGHQIDESMPQFPAR-NFELHNSNGRSPETSDAYNRLLRDGRIK 417

Query: 451 PCI 453
            CI
Sbjct: 418 DCI 420


>At4g00650.1 68417.m00089 FRIGIDA protein identical to
           Swiss-Prot:Q9FDW0 FRIGIDA protein [Arabidopsis thaliana]
          Length = 318

 Score = 33.9 bits (74), Expect = 0.23
 Identities = 21/103 (20%), Positives = 39/103 (37%)

Query: 152 PTIRPQPESRDTSLKNKGNQPERELMPPLLPSXXXXXXXXXXXQSSVYQFIKRFDPNSPD 211
           PT+  QP +    L  +    +R    P +             QS   QF+K  D  +  
Sbjct: 6   PTVAAQPTTTANPLLQRHQSEQRRRELPKIVETESTSMDITIGQSKQPQFLKSIDELAAF 65

Query: 212 SIKTAITQSEIIDLNKHLPEGQVSSEGQVSSEDERTPKKNKSF 254
           S+     + +  DL KH+   + + + ++ S       +N +F
Sbjct: 66  SVAVETFKRQFDDLQKHIESIENAIDSKLESNGVVLAARNNNF 108


>At1g63530.1 68414.m07182 hypothetical protein
          Length = 499

 Score = 33.5 bits (73), Expect = 0.30
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 300 PKPEQVLLPPKKDYSQSPLDSTTMGPPIYYEWKWAVPAFGLLPPKEGNITNSTALPTKSP 359
           P P   L  P ++   S    +T G  +  EW WA P   + P    + + ST +   +P
Sbjct: 106 PPPSSSLSGPAQNVPWSISAYSTAGRGV--EWAWARPDVAVYPASSSSSSTSTVVFGTTP 163

Query: 360 KTGKSPFSTAR---RTTIKAEDATPKPRNVE 387
            +  S F  ++   +TT     +TP P   E
Sbjct: 164 VSVSSLFGPSQDFPKTTFACCSSTPAPTRCE 194


>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
            profile PF00004: ATPase, AAA family
          Length = 1122

 Score = 33.1 bits (72), Expect = 0.39
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 45   LLIGQRDKPFVSDEEMSQRTPRPDILSVPLTSKYYDGLKEAESKFLLHPDNDIVGVADTI 104
            L++   ++PF  DE + +R PR  ++ +P TS     LK   +K  L PD DI  +A   
Sbjct: 962  LVLAATNRPFDLDEAVIRRLPRRLMVGLPDTSNRAFILKVILAKEDLSPDLDIGEIASMT 1021

Query: 105  SG 106
            +G
Sbjct: 1022 NG 1023


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 32.7 bits (71), Expect = 0.52
 Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 1/104 (0%)

Query: 302 PEQVLLPPKKDYSQSPLDSTTMGPPIYYEWKWAVPAFGLLPPKEGNITNSTALPTKSPKT 361
           P   L PP   Y    L +T + PP         P   + P K    T    LP   P T
Sbjct: 48  PSPALKPPTPSYKPPTLPTTPIKPPTTKP-PVKPPTIPVTPVKPPVSTPPIKLPPVQPPT 106

Query: 362 GKSPFSTARRTTIKAEDATPKPRNVEYNISSYYVPDYVFPLDGP 405
            K P  T +  +++     P    V+   +S   P    P+  P
Sbjct: 107 YKPPTPTVKPPSVQPPTYKPPTPTVKPPTTSPVKPPTTPPVQSP 150


>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family; similar to Spastin
            (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
            (Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
            mitochondrial sorting protein 1 (MSP1) protein
            (TAT-binding homolog 4) (Swiss-Prot:P28737)
            [Saccharomyces cerevisiae]
          Length = 1265

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 30   YMVNCS-MAERDYDANLLIGQRDKPFVSDEEMSQRTPRPDILSVPLTSKYYDGLKEAESK 88
            +MVN   +  +D +  L++   ++PF  DE + +R PR  ++++P  +     L    +K
Sbjct: 1089 FMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDATNRSKILSVILAK 1148

Query: 89   FLLHPDNDIVGVADTISG 106
              + PD D+  +A+   G
Sbjct: 1149 EEIAPDVDLEAIANMTDG 1166


>At1g16500.1 68414.m01973 expressed protein
          Length = 259

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 403 DGPHPGYESDDAQTSFQVQVSRPGRSSY----GENPKCPQCHPAYLKPGSCEPCI 453
           DG + G  S     S QV    PG  SY      NPKCP+CH     P   +P I
Sbjct: 200 DGVYDGTASATVAAS-QVAAGCPGCLSYVFVAKNNPKCPRCHSFVPLPAMKKPKI 253


>At5g28235.1 68418.m03421 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; simlar to At4g08430, At5g45570
          Length = 568

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 50  RDKPFVSDEEMSQRTPRPDILSVPLTSKYYDGLKEAESKFLLHP-----DNDIVGVADTI 104
           + K  V+ E++ +  P+P++    +  +  D  K  + K +  P     D+D+V V D +
Sbjct: 216 KKKTIVNVEKVEK--PKPEMKKTVVKVEKVDSPKPLQKKSVAAPTTKTFDDDVVDVTDKV 273

Query: 105 SGDEDNILDSAKQNYRPPTSWSTRK 129
           + D   +  S+++ +  PT     K
Sbjct: 274 NADNLKMASSSEETFSNPTDQMANK 298


>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 1025

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 22/68 (32%), Positives = 32/68 (47%)

Query: 45  LLIGQRDKPFVSDEEMSQRTPRPDILSVPLTSKYYDGLKEAESKFLLHPDNDIVGVADTI 104
           L++   ++PF  DE + +R P   ++ +P        LK   SK  L PD DI  VA   
Sbjct: 865 LVLAATNRPFDLDEAVIRRLPHRLMVGLPDARSRSKILKVILSKEDLSPDFDIDEVASMT 924

Query: 105 SGDEDNIL 112
           +G   N L
Sbjct: 925 NGYSGNDL 932


>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 295 VKSKVPKPEQVLLPPK----KDYSQSPLDSTTMGPPIYYEWKWAVPAFGLLPPKEGNITN 350
           VK   PKP  V   PK    K + + P       PP         P      PK   +  
Sbjct: 60  VKPPTPKPPTVKPHPKPPTVKPHPKPPTVKPHPKPPTVKPPHPKPPTKPHPHPKPPIVKP 119

Query: 351 STALPTKSPKTG-KSPFSTARRTTIKAEDATPKP 383
            T  P  +PK   K P ST +  T K   +TPKP
Sbjct: 120 PTKPPPSTPKPPTKPPPSTPKPPTTKPPPSTPKP 153


>At1g10620.1 68414.m01204 protein kinase family protein contains
           serine/threonine protein kinases active-site signature,
           PROSITE:PS00108
          Length = 718

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 121 PPTSWSTRKRRPNVQINNIDSLAGAASQEPGPTIRP-QPESRDTSLKNKGNQPERELMPP 179
           PP S   +   P    NNI          P P   P  P S++ S  ++G+ P   L+PP
Sbjct: 129 PPPSLVNQLPDPRPNDNNILEPINNPISLPSPPSTPFSPPSQENS-GSQGSPPLSSLLPP 187

Query: 180 LLP 182
           +LP
Sbjct: 188 MLP 190


>At1g02990.2 68414.m00269 expressed protein similar to
           mature-parasite-infected erythrocyte surface antigen
           (GI:160409) {Plasmodium falciparum}
          Length = 1238

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 23/229 (10%)

Query: 56  SDEEMSQRTPRPDILSVPLTS-----KYYDGLKEAESKFLLHPDNDIVGVADTISGDEDN 110
           S EE+  +T +  +LS    S     K  D + ++  + +L   N    +  +    EDN
Sbjct: 292 SCEELVSKTMKLPLLSCLSPSYIHPAKEIDNVSDSNVESILRGTNKDAALMGSKPELEDN 351

Query: 111 ILDSAKQNYRPPTSWSTRKRRPNVQINNIDSLAGAASQEPGPTIRPQPESRDTSLKNKGN 170
           ++  + ++ +   S + RK    ++   ++SL     +E  P+I    E  D S   KG 
Sbjct: 352 VVAFSDRSVKETESINVRKDVYLIKGEPLNSLESNPKREKAPSI----EHVDYSSVVKGT 407

Query: 171 QPERELMPPLLPSXXXXXXXXXXXQSSVYQF---------IKRFDPNSPDSIKTAITQSE 221
           Q E      +L S            SS+            +     N PD ++  I +SE
Sbjct: 408 QSETRNEEQILKSKLPKVQRSQKGSSSIVTMNSQRGKDAAVNIIKKNVPDKLQEDIEESE 467

Query: 222 IIDLNKHLPEGQVSSEGQVS----SEDERTPKKNKSFGNKLNDFKTDND 266
            +         +   E Q+S    +E E+  ++N + G   N  K D +
Sbjct: 468 HMCKGFFGDSKESKEEKQISPVLKAEKEKLSEEN-ALGESFNSVKNDEE 515


>At1g02990.1 68414.m00270 expressed protein similar to
           mature-parasite-infected erythrocyte surface antigen
           (GI:160409) {Plasmodium falciparum}
          Length = 1069

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 23/229 (10%)

Query: 56  SDEEMSQRTPRPDILSVPLTS-----KYYDGLKEAESKFLLHPDNDIVGVADTISGDEDN 110
           S EE+  +T +  +LS    S     K  D + ++  + +L   N    +  +    EDN
Sbjct: 292 SCEELVSKTMKLPLLSCLSPSYIHPAKEIDNVSDSNVESILRGTNKDAALMGSKPELEDN 351

Query: 111 ILDSAKQNYRPPTSWSTRKRRPNVQINNIDSLAGAASQEPGPTIRPQPESRDTSLKNKGN 170
           ++  + ++ +   S + RK    ++   ++SL     +E  P+I    E  D S   KG 
Sbjct: 352 VVAFSDRSVKETESINVRKDVYLIKGEPLNSLESNPKREKAPSI----EHVDYSSVVKGT 407

Query: 171 QPERELMPPLLPSXXXXXXXXXXXQSSVYQF---------IKRFDPNSPDSIKTAITQSE 221
           Q E      +L S            SS+            +     N PD ++  I +SE
Sbjct: 408 QSETRNEEQILKSKLPKVQRSQKGSSSIVTMNSQRGKDAAVNIIKKNVPDKLQEDIEESE 467

Query: 222 IIDLNKHLPEGQVSSEGQVS----SEDERTPKKNKSFGNKLNDFKTDND 266
            +         +   E Q+S    +E E+  ++N + G   N  K D +
Sbjct: 468 HMCKGFFGDSKESKEEKQISPVLKAEKEKLSEEN-ALGESFNSVKNDEE 515


>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 442

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 52  KPFVSDEEMSQ-RTPRPDILSVPLTSKYYDG 81
           KPF S EE+ + R P  DILS+P+   Y  G
Sbjct: 318 KPFASLEELEKGRLPPQDILSLPMFKNYTAG 348


>At3g23510.1 68416.m02960 cyclopropane fatty acid synthase, putative
           / CPA-FA synthase, putative similar to cyclopropane
           synthase [Sterculia foetida] GI:21069167; contains Pfam
           profile PF02353: Cyclopropane-fatty-acyl-phospholipid
           synthase
          Length = 867

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 379 ATPKPRNVEYNISSYYVPDYVFP 401
           +TP+ R  EY +SS ++ +Y+FP
Sbjct: 736 STPEERYNEYRLSSDFIKEYIFP 758


>At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing
           protein (ADOF2) identical to Dof zinc finger protein
           ADOF2 GI:3608263 from [Arabidopsis thaliana]; identical
           to cDNA adof2 mRNA for Dof zinc finger protein
           GI:3608262; contains Pfam profile PF02701: Dof domain,
           zinc finger
          Length = 204

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 341 LPPKEGNITNSTALPTKSPKTGKSPFSTARRTTIKAEDATPKPRN 385
           +P   G+  N+T   T S  +  SP ++++    K  D  P PRN
Sbjct: 72  VPVGGGSRKNATKRSTSSSSSASSPSNSSQNKKTKNPDPDPDPRN 116


>At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 270

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 100 VADTISGDEDNILDSAKQNYRPPTSWSTRKRRPNVQINNIDSLAGAASQEPGPTIRPQPE 159
           +++T + D ++ +  A  N   P S++   RR   ++ N +  + ++S  P P  +P P+
Sbjct: 1   MSNTSNSDPNSDIPFASSNVTLP-SYNQNPRRKRTKLTNNEVGSSSSSPRPKPVTQPDPD 59

Query: 160 S 160
           +
Sbjct: 60  A 60


>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
            domain, PF00004: ATPase, AAA family; similar to
            mitochondrial sorting protein 1 (MSP1) (TAT-binding
            homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
          Length = 1252

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 30   YMVNCS-MAERDYDANLLIGQRDKPFVSDEEMSQRTPRPDILSVPLTSKYYDGLKEAESK 88
            +M+N   +  +D +  L++   ++PF  DE + +R PR  ++++P ++     L    +K
Sbjct: 1076 FMINWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSANRSKILSVILAK 1135

Query: 89   FLLHPDNDIVGVADTISG 106
              +  D D+  +A+   G
Sbjct: 1136 EEMAEDVDLEAIANMTDG 1153


>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 468

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 308 PPKKDYSQSPLDSTTMGPPIYYEWKWAVPAFGLLPPKEGNITNSTALPTKSPK 360
           PP   Y+Q P + T   PP+Y    ++ P++   P +     N   L  K  K
Sbjct: 47  PPPPSYAQPP-EYTQPPPPLYSTQPYSAPSYSAPPSQSYGSDNKKRLERKYSK 98


>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 468

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 308 PPKKDYSQSPLDSTTMGPPIYYEWKWAVPAFGLLPPKEGNITNSTALPTKSPK 360
           PP   Y+Q P + T   PP+Y    ++ P++   P +     N   L  K  K
Sbjct: 47  PPPPSYAQPP-EYTQPPPPLYSTQPYSAPSYSAPPSQSYGSDNKKRLERKYSK 98


>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 468

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 308 PPKKDYSQSPLDSTTMGPPIYYEWKWAVPAFGLLPPKEGNITNSTALPTKSPK 360
           PP   Y+Q P + T   PP+Y    ++ P++   P +     N   L  K  K
Sbjct: 47  PPPPSYAQPP-EYTQPPPPLYSTQPYSAPSYSAPPSQSYGSDNKKRLERKYSK 98


>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 468

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 308 PPKKDYSQSPLDSTTMGPPIYYEWKWAVPAFGLLPPKEGNITNSTALPTKSPK 360
           PP   Y+Q P + T   PP+Y    ++ P++   P +     N   L  K  K
Sbjct: 47  PPPPSYAQPP-EYTQPPPPLYSTQPYSAPSYSAPPSQSYGSDNKKRLERKYSK 98


>At3g47610.1 68416.m05183 expressed protein
          Length = 408

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 74  LTSKYYDGLKEAE--SKFLLHPDNDIVGVADTISGDEDNILDSAKQNYRPPTSWSTRKRR 131
           L  K  + ++EAE   K  +    D++G    ++ D+ + L+S  +   PP + +  + +
Sbjct: 263 LVRKKREEIEEAERVKKSKVVMTFDLIGRKVLLNEDDISELESGNRILGPPETKNVNRIK 322

Query: 132 PNVQINNIDSLAGAASQEPGPTIRPQPESRDTSLKNKGNQ 171
           PN     +         +PGPT   +P S  T   NK N+
Sbjct: 323 PNPTARLVPIFL-----DPGPT-EKKPNSTTTKKDNKKNR 356


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.132    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,994,895
Number of Sequences: 28952
Number of extensions: 551867
Number of successful extensions: 1344
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1330
Number of HSP's gapped (non-prelim): 29
length of query: 456
length of database: 12,070,560
effective HSP length: 83
effective length of query: 373
effective length of database: 9,667,544
effective search space: 3605993912
effective search space used: 3605993912
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)

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