Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001327-TA|BGIBMGA001327-PA|undefined
         (196 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804     27   7.6  

>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
          Length = 1209

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 163 LGELTIDLASKEDEMSCIKIKIANRTEK 190
           L +LT  L  KEDE++ ++ ++AN T +
Sbjct: 564 LAQLTAALQQKEDELAALRTQMANGTSQ 591


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,010,017
Number of Sequences: 37544
Number of extensions: 94955
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 1
length of query: 196
length of database: 14,793,348
effective HSP length: 78
effective length of query: 118
effective length of database: 11,864,916
effective search space: 1400060088
effective search space used: 1400060088
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)