Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001327-TA|BGIBMGA001327-PA|undefined
         (196 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35560.1 68417.m05053 expressed protein                             30   1.2  
At4g02880.1 68417.m00388 expressed protein                             27   8.4  

>At4g35560.1 68417.m05053 expressed protein 
          Length = 917

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 58  IEKMNRIYESEDSQLETRLLNSSADRDHVLM-----KSQXXXXXXXXXXXXIQNITQLTK 112
           +E MNR+Y+ ++S     ++ SS+ R+   M     K++             + I +L+K
Sbjct: 687 VESMNRVYKKDNSVCHEGIITSSSPREKKSMFGSVFKTKSKRTTDTEPESSKETIEELSK 746

Query: 113 ELREAESNGPLRLQNQKWIQNLMRVQE 139
               A       ++N + I  + RV++
Sbjct: 747 IFSTANFPWNNNVENSREINTITRVED 773


>At4g02880.1 68417.m00388 expressed protein
          Length = 552

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 52  NIAWGEIEKMNRIYESEDSQLETRLLNSSADRDH---VLMKSQXXXXXXXXXXXXIQNIT 108
           ++A GE+     I  +E ++LE RL++ S +RD+   VL + +            I+N  
Sbjct: 344 DMAAGEVYGERSILTTEVNELENRLISLSEERDNSLSVLDEMRVDLEIRLATALGIKNAA 403

Query: 109 QLTKELREAES 119
           +  K+ +E  +
Sbjct: 404 EQEKQEKEGSA 414


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,466,409
Number of Sequences: 28952
Number of extensions: 85540
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 3
length of query: 196
length of database: 12,070,560
effective HSP length: 77
effective length of query: 119
effective length of database: 9,841,256
effective search space: 1171109464
effective search space used: 1171109464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 57 (27.1 bits)