GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001327-TA|BGIBMGA001327-PA|undefined
         (196 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77661-12|CAB01191.1|  381|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z77658-12|CAB01162.1|  381|Caenorhabditis elegans Hypothetical p...    27   6.7  

>Z77661-12|CAB01191.1|  381|Caenorhabditis elegans Hypothetical
           protein F40G12.11 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 68  EDSQLETRLLNSSADRDHVLMK 89
           ED++  TRLLN   DRD +L K
Sbjct: 100 EDTKQSTRLLNEDQDRDTLLKK 121


>Z77658-12|CAB01162.1|  381|Caenorhabditis elegans Hypothetical
           protein F40G12.11 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 68  EDSQLETRLLNSSADRDHVLMK 89
           ED++  TRLLN   DRD +L K
Sbjct: 100 EDTKQSTRLLNEDQDRDTLLKK 121


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,629,756
Number of Sequences: 27539
Number of extensions: 91981
Number of successful extensions: 171
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 2
length of query: 196
length of database: 12,573,161
effective HSP length: 78
effective length of query: 118
effective length of database: 10,425,119
effective search space: 1230164042
effective search space used: 1230164042
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 57 (27.1 bits)