Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001326-TA|BGIBMGA001326-PA|IPR013893|Ribonuclease P,
Rpp40
(299 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22171| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11) 35 0.070
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.65
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 31 0.86
SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15) 31 0.86
SB_53279| Best HMM Match : rve (HMM E-Value=5.2e-36) 31 0.86
SB_49675| Best HMM Match : rve (HMM E-Value=5.2e-36) 31 0.86
SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 31 0.86
SB_33553| Best HMM Match : DUF101 (HMM E-Value=3.7) 31 0.86
SB_31326| Best HMM Match : rve (HMM E-Value=6.1e-07) 31 0.86
SB_30405| Best HMM Match : rve (HMM E-Value=5.1e-07) 31 0.86
SB_19549| Best HMM Match : DUF101 (HMM E-Value=3.7) 31 0.86
SB_15390| Best HMM Match : rve (HMM E-Value=5.2e-36) 31 0.86
SB_10309| Best HMM Match : rve (HMM E-Value=9.6e-32) 31 0.86
SB_9645| Best HMM Match : DUF101 (HMM E-Value=4.3) 31 0.86
SB_1714| Best HMM Match : rve (HMM E-Value=9.6e-32) 31 0.86
SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36) 31 0.86
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_35114| Best HMM Match : RVT_1 (HMM E-Value=2.2e-11) 31 0.86
SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 31 0.86
SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21) 31 0.86
SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36) 31 0.86
SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18) 31 0.86
SB_52981| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_14719| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_22171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 41.5 bits (93), Expect = 8e-04
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 80 FINTFVKNGYLYCLSSERNCVIQNCFAVTPEGILILHILEYDFQTLGFEGHKR---PHNY 136
FI FV+NG + LS + + +NC A+ P G L+L + + ++ LG G K N
Sbjct: 82 FIEHFVRNGSITALSYDTHIDTENCIALLPTGKLVLSLDKDIYEELGIPGKKSIFVKSNR 141
Query: 137 YEVSIKLKEI------KNYDKIRQGLKK 158
+ V + +K K Y ++RQ K+
Sbjct: 142 FVVEVDVKAASFTSGKKLYSRVRQCFKR 169
>SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)
Length = 1033
Score = 35.1 bits (77), Expect = 0.070
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 201 VSPTITEIPSVSHASIDELVEWTGILAHNGNLSQYETYISTYCPPESERSLHSTNISVII 260
VSPT I +V+ ++ + W + A G++ YE S Y P +RS+ ++ ++
Sbjct: 654 VSPTQLIITNVTERAVS--LTWDNVTARVGSVDGYEIKCSLYSPKRRKRSMEKKSVKTLL 711
Query: 261 VEGYFSPT 268
++ ++ T
Sbjct: 712 MKEFWYRT 719
>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 31.9 bits (69), Expect = 0.65
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 175 ICPSTIAKYFYELN---YKVTAKPPVLKTVSPTITEIPSVSHASIDELVEWTGILAHNGN 231
+ P+ FY+L YK + + K ++PT EI +S +D + ++A N
Sbjct: 909 LIPADKTTNFYKLEPATYKNLLEKEINKLINPTKPEIGKISKKILDRI---NSVIAKKRN 965
Query: 232 LSQYETYISTYCPPESERSLHSTN-ISVIIVEGYFSPTVLQKLCNIITDYVKSRD 285
+Q+++ + ++ + H N I IVE F P++ Q L + D+ + D
Sbjct: 966 FNQWKSTKAVIDWFKAAENKHQLNFICFDIVE--FYPSISQDLLSRALDFASNYD 1018
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 740 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 776
>SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15)
Length = 615
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 337 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 373
>SB_53279| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 337
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 24 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 60
>SB_49675| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 412
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 9 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 45
>SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 998
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 787 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 823
>SB_33553| Best HMM Match : DUF101 (HMM E-Value=3.7)
Length = 252
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 169 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 205
>SB_31326| Best HMM Match : rve (HMM E-Value=6.1e-07)
Length = 330
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 142 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 178
>SB_30405| Best HMM Match : rve (HMM E-Value=5.1e-07)
Length = 409
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 198 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 234
>SB_19549| Best HMM Match : DUF101 (HMM E-Value=3.7)
Length = 225
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 142 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 178
>SB_15390| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 748
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 342 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 378
>SB_10309| Best HMM Match : rve (HMM E-Value=9.6e-32)
Length = 546
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 169 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 205
>SB_9645| Best HMM Match : DUF101 (HMM E-Value=4.3)
Length = 360
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 212 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 248
>SB_1714| Best HMM Match : rve (HMM E-Value=9.6e-32)
Length = 517
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 169 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 205
>SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 1048
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 787 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 823
>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 888 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 924
>SB_35114| Best HMM Match : RVT_1 (HMM E-Value=2.2e-11)
Length = 512
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 297 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 333
>SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 763 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 799
>SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 870
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 787 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 823
>SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21)
Length = 1032
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 403 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 439
>SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1677
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 771 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 807
>SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18)
Length = 1046
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 145 EIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAK 182
+IKN DKI + +L + FD+I+ P E+I P T+++
Sbjct: 183 KIKN-DKIMRWKIELSCYSFDIIYRPGKENIPPDTLSR 219
>SB_52981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 172 NEDICPSTIAKYFYELNYKVTAKPPVLKTVSPTITEIPSVSHASIDELV 220
N D+CP + KYF + Y T+ V+ TI I +V S++ LV
Sbjct: 3 NTDLCPDYLQKYFAD-KYSPTSWVTTSGYVTSTINTIFAVPATSLNLLV 50
>SB_14719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 54 IKDTITEDSVYYRIN---DCSLMEIIEPIFINTFV 85
+KDTI+ D R+N DCS++E + PI+ FV
Sbjct: 41 LKDTISPDVC--RVNPEIDCSMLEHVAPIYFAVFV 73
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,873,826
Number of Sequences: 59808
Number of extensions: 455316
Number of successful extensions: 961
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 26
length of query: 299
length of database: 16,821,457
effective HSP length: 82
effective length of query: 217
effective length of database: 11,917,201
effective search space: 2586032617
effective search space used: 2586032617
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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