Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001326-TA|BGIBMGA001326-PA|IPR013893|Ribonuclease P,
Rpp40
         (299 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U94317-1|AAC24114.1|  302|Homo sapiens ribonuclease P protein su...    84   5e-16
AL359643-4|CAH73740.1|  303|Homo sapiens ribonuclease P 40kDa su...    80   1e-14
BC017871-1|AAH17871.1|  244|Homo sapiens RPP40 protein protein.        55   3e-07
AL359643-3|CAH73739.1|  280|Homo sapiens ribonuclease P 40kDa su...    55   3e-07

>U94317-1|AAC24114.1|  302|Homo sapiens ribonuclease P protein
           subunit p40 protein.
          Length = 302

 Score = 84.2 bits (199), Expect = 5e-16
 Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 28/255 (10%)

Query: 64  YYRINDCSLMEIIEPIFINTFVKNGYLYCLSSERNCVIQNCFAVTPEGILILHILEYDFQ 123
           YY + +  L E+I P FI+TF+K G  Y L+   +    N  A+ P G LIL + +  ++
Sbjct: 6   YYFVKNLPLHELITPEFISTFIKKGSCYALTYNTHIDEDNTVALLPNGKLILSLDKDTYE 65

Query: 124 TLGFEGHK-----RPHNYYEVSIKLKEI------KNYDKIRQGL--KKLGKFDFDVIWEP 170
             G +GH      R    + VSI L E+      K Y++I      KK  KFDF + W  
Sbjct: 66  ETGLQGHPSQFSGRKIMKFIVSIDLMELSLNLDSKKYERISWSFKEKKPLKFDFLLAWHK 125

Query: 171 TNEDICPSTIAKYFYELNYKVTAKPPVLKTV---------SPTITEIPSVSHASIDELVE 221
           T  +   ST+  YF +   +       L T+         S  +   P VS  ++ EL +
Sbjct: 126 TGSE--ESTMMSYFSKYQIQEHQPKVALSTLRDLQCPVLQSSELEGTPEVSCRAL-ELFD 182

Query: 222 WTGILAHNGNLSQYETYISTYCPPESERSLHSTNISVIIVEGYFSPTVLQKLCNIITDYV 281
           W G +  N +L++   +ISTYC PE    +    +  I   G+  P  +  L   +  Y 
Sbjct: 183 WLGAVFSNVDLNEPNNFISTYCCPEPSTVVAKAYLCTI--TGFILPEKICLLLEHLCHYF 240

Query: 282 KSRDLDDYWASISIQ 296
               L   W ++S+Q
Sbjct: 241 DEPKLAP-WVTLSVQ 254


>AL359643-4|CAH73740.1|  303|Homo sapiens ribonuclease P 40kDa
           subunit protein.
          Length = 303

 Score = 79.8 bits (188), Expect = 1e-14
 Identities = 73/256 (28%), Positives = 113/256 (44%), Gaps = 29/256 (11%)

Query: 64  YYRINDCSLMEIIEPIFINTFVKNGYLYCLSSERNCVIQNCFAVTPEGILILHILEYDFQ 123
           YY + +  L E+I P FI+TF+K G  Y L+   +    N  A+ P G LIL + +  ++
Sbjct: 6   YYFVKNLPLHELITPEFISTFIKKGSCYALTYNTHIDEDNTVALLPNGKLILSLDKDTYE 65

Query: 124 TLGFEGHK-----RPHNYYEVSIKLKEI------KNYDKIRQGL--KKLGKFDFDVIWEP 170
             G +GH      R    + VSI L E+      K Y++I      KK  KFDF + W  
Sbjct: 66  ETGLQGHPSQFSGRKIMKFIVSIDLMELSLNLDSKKYERISWSFKEKKPLKFDFLLAWHK 125

Query: 171 TNEDICPSTIAKYFYELNYKVTAKPPVLKTV---------SPTITEIPSVSHASIDELVE 221
           T  +   ST+  YF +   +       L T+         S  +   P VS  ++ EL +
Sbjct: 126 TGSE--ESTMMSYFSKYQIQEHQPKVALSTLRDLQCPVLQSSELEGTPEVSCRAL-ELFD 182

Query: 222 WTGILAHNGNL-SQYETYISTYCPPESERSLHSTNISVIIVEGYFSPTVLQKLCNIITDY 280
           W G +  N +L ++   +ISTYC PE    +    +  I   G+  P  +  L   +  Y
Sbjct: 183 WLGAVFSNVDLNNEPNNFISTYCCPEPSTVVAKAYLCTI--TGFILPEKICLLLEHLCHY 240

Query: 281 VKSRDLDDYWASISIQ 296
                L   W ++S+Q
Sbjct: 241 FDEPKLAP-WVTLSVQ 255


>BC017871-1|AAH17871.1|  244|Homo sapiens RPP40 protein protein.
          Length = 244

 Score = 55.2 bits (127), Expect = 3e-07
 Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 30/245 (12%)

Query: 64  YYRINDCSLMEIIEPIFINTFVKNGYLYCLSSERNCVIQNCFAVTPEGILILHILEYDFQ 123
           YY + +  L E+I P FI+TF+K G L  LS +++   +      P       I+++   
Sbjct: 6   YYFVKNLPLHELITPEFISTFIKKGKLI-LSLDKDTYEETGLQGHPSQFSGRKIMKFIVS 64

Query: 124 TLGFEGHKRPHNYYEVSIKLKEIKNYDKIRQGLK--KLGKFDFDVIWEPTNEDICPSTIA 181
                      +  E+S+ L + K Y++I    K  K  KFDF + W  T  +   ST+ 
Sbjct: 65  I----------DLMELSLNL-DSKKYERISWSFKEKKPLKFDFLLAWHKTGSE--ESTMM 111

Query: 182 KYFYELNYKVTAKPPVLKTV---------SPTITEIPSVSHASIDELVEWTGILAHNGNL 232
            YF +   +       L T+         S  +   P VS  ++ EL +W G +  N +L
Sbjct: 112 SYFSKYQIQEHQPKVALSTLRDLQCPVLQSSELEGTPEVSCRAL-ELFDWLGAVFSNVDL 170

Query: 233 S-QYETYISTYCPPESERSLHSTNISVIIVEGYFSPTVLQKLCNIITDYVKSRDLDDYWA 291
           + +   +ISTYC PE    +    +  I   G+  P  +  L   +  Y     L   W 
Sbjct: 171 NNEPNNFISTYCCPEPSTVVAKAYLCTI--TGFILPEKICLLLEHLCHYFDEPKLAP-WV 227

Query: 292 SISIQ 296
           ++S+Q
Sbjct: 228 TLSVQ 232


>AL359643-3|CAH73739.1|  280|Homo sapiens ribonuclease P 40kDa
           subunit protein.
          Length = 280

 Score = 55.2 bits (127), Expect = 3e-07
 Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 30/245 (12%)

Query: 64  YYRINDCSLMEIIEPIFINTFVKNGYLYCLSSERNCVIQNCFAVTPEGILILHILEYDFQ 123
           YY + +  L E+I P FI+TF+K G L  LS +++   +      P       I+++   
Sbjct: 6   YYFVKNLPLHELITPEFISTFIKKGKLI-LSLDKDTYEETGLQGHPSQFSGRKIMKFIVS 64

Query: 124 TLGFEGHKRPHNYYEVSIKLKEIKNYDKIRQGLK--KLGKFDFDVIWEPTNEDICPSTIA 181
                      +  E+S+ L + K Y++I    K  K  KFDF + W  T  +   ST+ 
Sbjct: 65  I----------DLMELSLNL-DSKKYERISWSFKEKKPLKFDFLLAWHKTGSE--ESTMM 111

Query: 182 KYFYELNYKVTAKPPVLKTV---------SPTITEIPSVSHASIDELVEWTGILAHNGNL 232
            YF +   +       L T+         S  +   P VS  ++ EL +W G +  N +L
Sbjct: 112 SYFSKYQIQEHQPKVALSTLRDLQCPVLQSSELEGTPEVSCRAL-ELFDWLGAVFSNVDL 170

Query: 233 S-QYETYISTYCPPESERSLHSTNISVIIVEGYFSPTVLQKLCNIITDYVKSRDLDDYWA 291
           + +   +ISTYC PE    +    +  I   G+  P  +  L   +  Y     L   W 
Sbjct: 171 NNEPNNFISTYCCPEPSTVVAKAYLCTI--TGFILPEKICLLLEHLCHYFDEPKLAP-WV 227

Query: 292 SISIQ 296
           ++S+Q
Sbjct: 228 TLSVQ 232


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,283,322
Number of Sequences: 224733
Number of extensions: 2007896
Number of successful extensions: 4158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4150
Number of HSP's gapped (non-prelim): 6
length of query: 299
length of database: 73,234,838
effective HSP length: 90
effective length of query: 209
effective length of database: 53,008,868
effective search space: 11078853412
effective search space used: 11078853412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)