Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001326-TA|BGIBMGA001326-PA|IPR013893|Ribonuclease P,
Rpp40
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '...    31   1.2  
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '...    31   1.2  
At1g19485.1 68414.m02427 AT hook motif-containing protein contai...    30   1.6  
At3g11760.1 68416.m01443 expressed protein                             29   3.8  
At1g22460.1 68414.m02807 expressed protein similar to axi 1 [Nic...    29   5.0  
At4g21230.1 68417.m03070 protein kinase family protein contains ...    28   6.6  
At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containi...    28   8.7  
At1g54450.1 68414.m06211 calcium-binding EF-hand family protein ...    28   8.7  
At1g35710.1 68414.m04439 leucine-rich repeat transmembrane prote...    28   8.7  

>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
           'Morpheus molecule') [Arabidopsis thaliana]
           gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 15  YCTS--NKSITLESVQKFI--KMNDYYQSIIVTCPDTTQMPSFIKDTITEDSVYYRINDC 70
           YC +  +KS++L S+ K     + +   S+  TC     M + +K  +T++   + I D 
Sbjct: 494 YCQTLFSKSLSLSSLSKIDLGALEETLNSVRKTCDHPYVMDASLKQLLTKNLELHEILDV 553

Query: 71  SLMEIIEPIFINTFVKNGYLYCLSSERNCVIQNCFAVTPEGILILHILEYDFQTLGFEGH 130
            +    +   ++  +     +   +    V+      TPEG+L+ +ILE DF    F   
Sbjct: 554 EIKASGKLHLLDKMLT----HIKKNGLKAVVFYQATQTPEGLLLGNILE-DFVGQRFGPK 608

Query: 131 KRPHNYYEVSIKLKEIKNYDKIRQ 154
              H  Y  S K   I N++K  Q
Sbjct: 609 SYEHGIYS-SKKNSAINNFNKESQ 631


>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
           'Morpheus molecule') [Arabidopsis thaliana]
           gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 15  YCTS--NKSITLESVQKFI--KMNDYYQSIIVTCPDTTQMPSFIKDTITEDSVYYRINDC 70
           YC +  +KS++L S+ K     + +   S+  TC     M + +K  +T++   + I D 
Sbjct: 494 YCQTLFSKSLSLSSLSKIDLGALEETLNSVRKTCDHPYVMDASLKQLLTKNLELHEILDV 553

Query: 71  SLMEIIEPIFINTFVKNGYLYCLSSERNCVIQNCFAVTPEGILILHILEYDFQTLGFEGH 130
            +    +   ++  +     +   +    V+      TPEG+L+ +ILE DF    F   
Sbjct: 554 EIKASGKLHLLDKMLT----HIKKNGLKAVVFYQATQTPEGLLLGNILE-DFVGQRFGPK 608

Query: 131 KRPHNYYEVSIKLKEIKNYDKIRQ 154
              H  Y  S K   I N++K  Q
Sbjct: 609 SYEHGIYS-SKKNSAINNFNKESQ 631


>At1g19485.1 68414.m02427 AT hook motif-containing protein contains
           Pfam profile: PF00730 HhH-GPD superfamily base excision
           DNA repair protein; contains Pfam PF02178: AT hook
           motif; contains Pfam PF00400: WD domain, G-beta repeat
           (5 copies); contains Prosite PS00354: HMG-I and HMG-Y
           DNA-binding domain (A+T-hook)
          Length = 815

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)

Query: 5   EVWDFPPPK----VYCTSNKSITLESVQKFIKMNDYYQSIIVTCPDTTQMP 51
           EVWD P PK    +Y +S K+ T     +F+K+   ++   + C DT  +P
Sbjct: 391 EVWDVPMPKATSALYLSSKKAAT---DPRFVKLAPVFKCSNLKCGDTKSIP 438


>At3g11760.1 68416.m01443 expressed protein 
          Length = 702

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 8/33 (24%), Positives = 22/33 (66%)

Query: 137 YEVSIKLKEIKNYDKIRQGLKKLGKFDFDVIWE 169
           YEV + +K+++ +D +R+G+ +  +   ++ W+
Sbjct: 19  YEVKLSVKKLEGWDLVREGVPEKDRLTVEIRWK 51


>At1g22460.1 68414.m02807 expressed protein similar to axi 1
           [Nicotiana tabacum] GI:559921; contains Pfam profile
           PF03138: Plant protein family
          Length = 565

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 183 YFYELNYKVTAKPPVLKTVSPTITEIPSVSHASIDELVEWTGILAHNGNLSQYETYISTY 242
           Y  + N  +T +        P   EIP +S+   +E+   + I  H  N      ++ST 
Sbjct: 57  YIIDYNKSITEQSLTRNLSRPESNEIPLISNPKTNEIQYQSSISEHINNTELVPPHVST- 115

Query: 243 CPPESERSLHSTN 255
             P S   L+ T+
Sbjct: 116 -SPSSSSKLNITS 127


>At4g21230.1 68417.m03070 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 642

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 73  MEIIEPIFINTFVKNGYLYCLSSERNCVIQN 103
           ME+I+P+ + T  K   + CL    +CV +N
Sbjct: 559 MELIDPVLLQTHDKKESMQCLEIALSCVQEN 589


>At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 752

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 9/60 (15%)

Query: 220 VEWTGILAHNGNLSQYETYISTYCPPESERSLHSTNISVIIVEGYFSPTVLQKLCNIITD 279
           V W+ I++    +SQ+E  + T+      +SL S N S++     F+ T + + C+++ D
Sbjct: 352 VSWSAIISGYCQMSQFEEAVKTF------KSLRSKNASIL---NSFTYTSIFQACSVLAD 402


>At1g54450.1 68414.m06211 calcium-binding EF-hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 535

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 261 VEGYFSPTVLQKLCNIITDYVKSRDLDDYW 290
           V  +FS ++ +K+    T +VK  D  DYW
Sbjct: 174 VPSFFSTSIFKKVDTNNTGFVKREDFIDYW 203


>At1g35710.1 68414.m04439 leucine-rich repeat transmembrane protein
           kinase, putative similar to many predicted protein
           kinases
          Length = 1120

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 5/125 (4%)

Query: 134 HNYYEVSIKLKEIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAKYFYELNYKVTA 193
           H  Y  S+   E+ N + +        K    +   P++     + +  Y YE NY    
Sbjct: 158 HQNYLTSVIPSELGNMESMTDLALSQNKLTGSI---PSSLGNLKNLMVLYLYE-NYLTGV 213

Query: 194 KPPVLKTVSPTITEIPSVSHASIDELVEWTGILAHNGNLSQYETYISTYCPPESERSLHS 253
            PP L  +  ++T++    +     +    G L +   L  YE Y++   PPE       
Sbjct: 214 IPPELGNME-SMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESM 272

Query: 254 TNISV 258
           TN+++
Sbjct: 273 TNLAL 277


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,715,927
Number of Sequences: 28952
Number of extensions: 326962
Number of successful extensions: 805
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 9
length of query: 299
length of database: 12,070,560
effective HSP length: 81
effective length of query: 218
effective length of database: 9,725,448
effective search space: 2120147664
effective search space used: 2120147664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)