Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001326-TA|BGIBMGA001326-PA|IPR013893|Ribonuclease P,
Rpp40
(299 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 29 0.61
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 28 1.4
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 27 2.5
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 27 2.5
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 27 2.5
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 27 3.3
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 26 5.7
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 7.5
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 10.0
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 25 10.0
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 29.5 bits (63), Expect = 0.61
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 64 YYRINDCSLMEIIEPIFINTFVKNGYLYCLSSE 96
+YR DC+L + IE +NT V G YC +++
Sbjct: 949 FYRETDCTLGQYIEDSCLNTNVSCGGEYCKTND 981
>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 202 SPTITEIPSVSHASIDELVEWTGIL 226
SP + +PSV H++ D+L E G L
Sbjct: 97 SPPLRRLPSVQHSTFDDLFEGVGSL 121
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 142 KLKEIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAKYFYELNYKVT 192
K++EI N K L K +F F + E +NED+ I E NYK+T
Sbjct: 589 KVEEIANLKKELTHLAKQQEFGFKYVQEFSNEDLQGKLIEA--NEKNYKLT 637
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDK 151
G K+PH Y ++ L+EI+ Y K
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQK 57
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDK 151
G K+PH Y ++ L+EI+ Y K
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQK 57
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 129 GHKRPHNYYEVSIKLKEIKNYDK 151
G K+PH Y ++ L+EI+ Y K
Sbjct: 35 GVKKPHRYRPGTVALREIRRYQK 57
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 246 ESERSLHSTNISVIIVEGYFSPTVLQKLCNIITDYVKS-RDLDDYWASI 293
ES++SL S ++ + E PTV KLC+ I + +S D W +
Sbjct: 94 ESKQSLQSQLLACFVKESV--PTVRNKLCDTIAEIARSIYDCQGEWPEL 140
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 5.7
Identities = 19/78 (24%), Positives = 29/78 (37%)
Query: 144 KEIKNYDKIRQGLKKLGKFDFDVIWEPTNEDICPSTIAKYFYELNYKVTAKPPVLKTVSP 203
K K + K+R KK D+D+ T D +T Y L K +T +
Sbjct: 84 KPKKEHPKLRPSKKKATLDDWDIPTSSTETDTISTTHTSYIPTLLAKQEENEETKETTTN 143
Query: 204 TITEIPSVSHASIDELVE 221
+P S E++E
Sbjct: 144 KNESLPGTSLKRNREIIE 161
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 240 STYCPPESERSLHSTNISVIIVEGYFSPTVLQ 271
ST PP +E +LH+ + GY SP + Q
Sbjct: 122 STVLPPRTENALHAASPKPSGSTGYTSPALSQ 153
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 220 VEWTGILAHNGNLSQYETYISTYCPPESER 249
+ W L NGNL + IS C E+ER
Sbjct: 215 LSWINALYCNGNLLYPSSSISATCTSEAER 244
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 186 ELNYKVTAKPPVLKTVSPTITEIPSVSHAS 215
E+N ++ PP K++SP+I PS+ AS
Sbjct: 527 EVNRSISIPPP--KSISPSILHKPSLESAS 554
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,554,529
Number of Sequences: 5004
Number of extensions: 69832
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 11
length of query: 299
length of database: 2,362,478
effective HSP length: 72
effective length of query: 227
effective length of database: 2,002,190
effective search space: 454497130
effective search space used: 454497130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)
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