GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001326-TA|BGIBMGA001326-PA|IPR013893|Ribonuclease P,
Rpp40
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0598 + 23548081-23548186,23548277-23549508,23549621-235496...    35   0.069
08_01_0444 - 3934777-3936130,3939744-3940141                           29   3.4  
12_02_0941 + 24602840-24602930,24603438-24603445,24603899-246039...    29   4.5  
02_04_0091 + 19651828-19652086,19652199-19652269,19652404-196525...    29   4.5  
12_02_0048 - 12852335-12852745                                         29   6.0  

>01_05_0598 +
           23548081-23548186,23548277-23549508,23549621-23549652,
           23549796-23550039
          Length = 537

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 178 STIAKYFYELNYKVTAKPPVLKTVSPTITEIPSVSHASIDELVEWTGILAHN-GNLSQYE 236
           ST+  Y   LN++  AK P L T     T       A + +LVEW G +A + G L ++ 
Sbjct: 398 STLEDYTKALNHRYGAKLPDLHTGLSQTTMALDRMKADVRDLVEWKGNVAKDLGELKEWR 457

Query: 237 TYISTYCPPESERSLHSTNISVIIVEGYFSPTVLQKL 273
           + +        + ++ +  ++V+ +  +F+   L KL
Sbjct: 458 SNVEEM--RSIQETMQNKELAVLSISLFFACLALFKL 492


>08_01_0444 - 3934777-3936130,3939744-3940141
          Length = 583

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 144 KEIKNYDKIRQGLKKLGKFDFDVI-WEPTNEDICPSTIAKYFYELNYKVTAKPPVLKTVS 202
           KEI +YDK++Q   ++   D   I +   N    P  +A     L  K+  K P+L  V+
Sbjct: 294 KEIPDYDKVKQACVQVSSLDMAPIRFIKKNLISRPMGLAA---SLPGKLMRKVPLLSAVA 350

Query: 203 PTITEIPSVSHASIDELVEWTGI 225
           P + ++ S S ++ D      G+
Sbjct: 351 PLVGKLWSSSSSAADMEARLKGV 373


>12_02_0941 +
           24602840-24602930,24603438-24603445,24603899-24603934,
           24604126-24604238,24605129-24605240,24605603-24605721,
           24606996-24607043,24607173-24607209
          Length = 187

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 16  CTSNKSITLESVQKFIKMNDYYQSIIVTCPDTTQMP--SFIKDTITEDSVYYRINDCSLM 73
           C + + I  ES   +I + +  Q +      T ++   SFI   +  D   ++I++ S+ 
Sbjct: 28  CGAGQKINFES--DYISLWELKQEVAALVMPTRELTATSFINPILKVDQNKHKIDEKSVS 85

Query: 74  EIIEPIFINTFVKNGYLYCLSSERNCVI 101
           +I +  ++   +   YL  + S   C +
Sbjct: 86  DIHDKYWLANIINRAYLLAIFSSNFCAV 113


>02_04_0091 +
           19651828-19652086,19652199-19652269,19652404-19652505,
           19652626-19652730,19652865-19653000,19654178-19654287,
           19654381-19654461
          Length = 287

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 8   DFPPPKVYCTSNKSITLESVQ-KFIKMNDYYQSIIVTCPDTTQMPSFIKDTITEDSVYYR 66
           D P PK     + S+T++ V  K + +  +  S +VT  D +Q  S +++T+ +DS  +R
Sbjct: 199 DLPLPK-----DPSVTIKEVPAKIVAVAAF--SGLVTDDDISQRESRLRETLQKDS-QFR 250

Query: 67  INDCSLMEIIE 77
           + D S++EI +
Sbjct: 251 VKDDSVVEIAQ 261


>12_02_0048 - 12852335-12852745
          Length = 136

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 109 PEGILILHILEYDFQTLGFEGHKRPHNYYEVSIKLKEIKNYDKIRQGLKKLGKFDFDVIW 168
           P  +L++ +      T+   G K+PH +   ++ L+EI+ Y K  + L  + K  F  + 
Sbjct: 17  PRKLLVMKVARKSAPTMA--GLKKPHRFKPGTVALREIRTYQKSTELL--IRKLPFQRLV 72

Query: 169 EPTNEDI 175
           +   +D+
Sbjct: 73  QEIAQDV 79


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,072,928
Number of Sequences: 37544
Number of extensions: 359989
Number of successful extensions: 758
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 5
length of query: 299
length of database: 14,793,348
effective HSP length: 82
effective length of query: 217
effective length of database: 11,714,740
effective search space: 2542098580
effective search space used: 2542098580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)